Wall clock time and date at job start Tue Mar 31 2020 09:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99660 * 2 1 4 4 N 1.46905 * 109.47063 * 126.01000 * 3 2 1 5 5 C 1.46894 * 111.00045 * 159.23192 * 4 3 2 6 6 C 1.50703 * 109.47035 * 291.73317 * 5 4 3 7 7 H 1.08002 * 119.99884 * 4.17132 * 6 5 4 8 8 C 1.37881 * 120.00010 * 184.16814 * 6 5 4 9 9 N 1.31514 * 119.99772 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99999 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47362 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47547 * 120.00222 * 10 8 6 13 13 H 1.48507 * 109.47284 * 240.00191 * 10 8 6 14 14 C 1.46900 * 110.99439 * 283.18512 * 4 3 2 15 15 H 1.09003 * 109.46893 * 193.17886 * 14 4 3 16 16 C 1.53003 * 109.47356 * 313.17048 * 14 4 3 17 17 C 1.52998 * 109.47437 * 73.17896 * 14 4 3 18 18 C 1.53001 * 109.47301 * 62.01382 * 17 14 4 19 19 S 1.81394 * 109.47042 * 180.02562 * 18 17 14 20 20 C 1.76202 * 103.00032 * 179.97438 * 19 18 17 21 21 C 1.38968 * 120.07831 * 359.71895 * 20 19 18 22 22 C 1.38084 * 119.92073 * 180.29796 * 21 20 19 23 23 C 1.38307 * 120.07993 * 359.97438 * 22 21 20 24 24 C 1.38304 * 120.15574 * 0.02562 * 23 22 21 25 25 C 1.38078 * 120.08394 * 0.02562 * 24 23 22 26 26 H 1.08004 * 120.00102 * 359.97438 * 1 2 3 27 27 H 1.07995 * 120.00079 * 179.97438 * 1 2 3 28 28 H 1.07996 * 119.99796 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47838 * 6.00878 * 3 2 1 30 30 H 1.08999 * 109.47187 * 246.00240 * 3 2 1 31 31 H 1.09003 * 109.47581 * 51.73449 * 5 4 3 32 32 H 1.09002 * 109.46877 * 171.73663 * 5 4 3 33 33 H 0.97005 * 119.99629 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.46472 * 69.03404 * 16 14 4 35 35 H 1.08991 * 109.47091 * 189.02992 * 16 14 4 36 36 H 1.08994 * 109.47358 * 309.03570 * 16 14 4 37 37 H 1.09004 * 109.46534 * 302.01041 * 17 14 4 38 38 H 1.09004 * 109.47236 * 182.01758 * 17 14 4 39 39 H 1.08994 * 109.47011 * 59.99871 * 18 17 14 40 40 H 1.08998 * 109.46897 * 300.00144 * 18 17 14 41 41 H 1.07998 * 120.04499 * 0.28393 * 21 20 19 42 42 H 1.08004 * 119.95976 * 179.97438 * 22 21 20 43 43 H 1.07997 * 119.91949 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.95366 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.03961 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0135 1.3221 1.1204 5 6 4.0814 2.3042 0.8902 6 6 4.9523 1.8414 -0.2493 7 1 4.6957 0.9460 -0.7959 8 6 6.0767 2.5612 -0.5940 9 7 6.3893 3.6514 0.0720 10 14 7.1558 1.9881 -2.0068 11 1 6.5901 0.7445 -2.5889 12 1 7.2073 3.0435 -3.0502 13 1 8.5277 1.7208 -1.5051 14 6 2.3240 1.5821 2.3912 15 1 3.0582 1.8211 3.1606 16 6 1.3641 2.7610 2.2188 17 6 1.5354 0.3388 2.8073 18 6 2.5010 -0.8272 3.0287 19 16 1.5659 -2.3014 3.5213 20 6 2.8236 -3.5182 3.7268 21 6 4.1546 -3.1895 3.4995 22 6 5.1369 -4.1472 3.6555 23 6 4.7976 -5.4323 4.0380 24 6 3.4741 -5.7631 4.2651 25 6 2.4863 -4.8108 4.1100 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3601 2.1308 0.1076 30 1 2.6071 1.4109 -0.9388 31 1 3.6401 3.2693 0.6415 32 1 4.6852 2.4024 1.7924 33 1 7.1805 4.1576 -0.1703 34 1 0.5389 2.4657 1.5707 35 1 0.9735 3.0569 3.1923 36 1 1.8959 3.6001 1.7704 37 1 0.8258 0.0790 2.0218 38 1 0.9952 0.5437 3.7317 39 1 3.2105 -0.5672 3.8141 40 1 3.0411 -1.0320 2.1043 41 1 4.4203 -2.1862 3.2010 42 1 6.1715 -3.8925 3.4787 43 1 5.5680 -6.1795 4.1589 44 1 3.2127 -6.7676 4.5632 45 1 1.4529 -5.0699 4.2870 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428838331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:16 Heat of formation + Delta-G solvation = 45.510642 kcal Electronic energy + Delta-G solvation = -22699.411642 eV Core-core repulsion = 19615.444423 eV Total energy + Delta-G solvation = -3083.967219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.89274 -38.50627 -33.46481 -33.30951 -31.94647 -31.06040 -30.93365 -29.26436 -26.74870 -25.09780 -23.95585 -22.70536 -22.36438 -21.39791 -19.93180 -18.70727 -17.68710 -16.52719 -16.18824 -15.77706 -15.07746 -14.81443 -14.66469 -14.45340 -14.11291 -14.00954 -13.53299 -13.37440 -13.23356 -12.93046 -12.79419 -12.48443 -12.07740 -11.91038 -11.48820 -11.37078 -11.26899 -11.16931 -11.03766 -10.93672 -10.75011 -10.62685 -10.32712 -10.26586 -10.01200 -9.78959 -9.70970 -9.24963 -9.01213 -8.62446 -8.46073 -7.33386 -7.25380 -6.07182 -4.08363 1.20241 1.34188 1.67258 2.59646 2.67166 3.27614 3.35772 3.40160 3.69480 4.38590 4.82774 4.84637 4.91016 5.05280 5.10555 5.27437 5.32022 5.36510 5.39774 5.47235 5.51325 5.63845 5.67056 5.71370 5.86135 5.87123 5.95675 6.03190 6.12207 6.19582 6.27593 6.33500 6.34568 6.39389 6.47159 6.48153 6.54156 6.64652 6.87317 7.02055 7.03257 7.29625 7.32143 7.76959 8.05072 8.16551 8.49814 8.99632 9.56201 11.03442 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011323 B = 0.004353 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.150568 B = 6430.468792 C = 7977.715886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.107 4.107 3 C 0.070 3.930 4 N -0.525 5.525 5 C 0.193 3.807 6 C -0.506 4.506 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.085 3.915 15 H 0.075 0.925 16 C -0.181 4.181 17 C -0.110 4.110 18 C -0.084 4.084 19 S -0.143 6.143 20 C -0.074 4.074 21 C -0.130 4.130 22 C -0.099 4.099 23 C -0.132 4.132 24 C -0.107 4.107 25 C -0.108 4.108 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.039 0.961 30 H 0.093 0.907 31 H -0.010 1.010 32 H 0.032 0.968 33 H 0.260 0.740 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.971 -12.592 7.555 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.126 4.126 3 C -0.058 4.058 4 N -0.248 5.248 5 C 0.068 3.932 6 C -0.545 4.545 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.026 4.026 15 H 0.093 0.907 16 C -0.240 4.240 17 C -0.149 4.149 18 C -0.232 4.232 19 S 0.103 5.897 20 C -0.187 4.187 21 C -0.154 4.154 22 C -0.119 4.119 23 C -0.153 4.153 24 C -0.126 4.126 25 C -0.131 4.131 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.057 0.943 30 H 0.111 0.889 31 H 0.008 0.992 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.851 -12.891 7.716 17.965 hybrid contribution 1.789 0.667 -0.901 2.111 sum -8.062 -12.224 6.815 16.151 Atomic orbital electron populations 1.23647 0.95968 1.01076 1.05736 1.23127 0.95290 0.99553 0.94631 1.21355 0.94478 0.93089 0.96882 1.62257 1.10835 1.52218 0.99513 1.19747 0.87716 0.88231 0.97473 1.21193 1.08244 1.09989 1.15079 0.91845 1.24966 0.97642 0.94984 0.96882 1.69965 1.26594 1.16467 1.40701 0.86494 0.80405 0.78690 0.82153 1.19666 1.21132 1.21045 1.21644 0.94798 0.91914 0.94257 0.90704 1.22411 1.00502 0.99701 1.01366 1.21766 0.97822 0.93016 1.02288 1.23657 1.00733 0.93365 1.05438 1.85305 1.13689 1.05511 1.85190 1.21807 0.96560 0.97473 1.02893 1.21377 0.91702 1.00704 1.01566 1.21122 0.99335 0.93137 0.98305 1.21151 0.96341 0.96649 1.01170 1.21036 0.92872 0.98918 0.99811 1.20746 0.99585 0.91515 1.01298 0.89252 0.88999 0.87498 0.94287 0.88937 0.99194 0.94982 0.92987 0.92423 0.93056 0.91984 0.88909 0.92112 0.90174 0.87470 0.85113 0.85686 0.86099 0.85897 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.03 12.75 29.01 0.37 -2.66 16 2 C -0.11 -1.65 7.32 -36.03 -0.26 -1.92 16 3 C 0.07 1.25 4.94 -4.97 -0.02 1.23 16 4 N -0.52 -10.20 3.71 -229.52 -0.85 -11.05 16 5 C 0.19 4.71 4.40 -4.98 -0.02 4.68 16 6 C -0.51 -13.55 8.34 -34.44 -0.29 -13.84 16 7 H 0.06 1.69 7.32 -52.49 -0.38 1.31 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -25.96 13.29 55.43 0.74 -25.22 16 10 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.09 1.40 2.32 -67.71 -0.16 1.25 16 15 H 0.07 1.30 7.75 -51.93 -0.40 0.89 16 16 C -0.18 -2.76 8.08 37.16 0.30 -2.46 16 17 C -0.11 -1.56 4.23 -26.73 -0.11 -1.68 16 18 C -0.08 -1.21 4.17 37.16 0.15 -1.06 16 19 S -0.14 -1.95 21.92 -107.50 -2.36 -4.30 16 20 C -0.07 -1.01 6.11 -39.04 -0.24 -1.25 16 21 C -0.13 -1.78 9.36 -39.37 -0.37 -2.15 16 22 C -0.10 -1.20 10.04 -39.61 -0.40 -1.60 16 23 C -0.13 -1.41 10.04 -39.53 -0.40 -1.81 16 24 C -0.11 -1.12 10.04 -39.62 -0.40 -1.52 16 25 C -0.11 -1.29 9.79 -39.37 -0.39 -1.68 16 26 H 0.09 1.15 7.84 -52.48 -0.41 0.73 16 27 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.04 0.68 5.04 -51.93 -0.26 0.41 16 30 H 0.09 1.89 6.68 -51.93 -0.35 1.54 16 31 H -0.01 -0.25 7.20 -51.93 -0.37 -0.63 16 32 H 0.03 0.85 7.80 -51.93 -0.40 0.44 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.06 0.83 6.55 -51.93 -0.34 0.49 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 1.06 7.00 -51.93 -0.36 0.70 16 37 H 0.09 1.33 3.96 -51.93 -0.21 1.12 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.15 7.76 -51.93 -0.40 0.75 16 40 H 0.11 1.74 7.26 -51.92 -0.38 1.36 16 41 H 0.13 1.85 5.88 -52.49 -0.31 1.55 16 42 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -28.07 368.17 -11.37 -39.44 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.10 Total: 4.39 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -2.32 Total: -24.98 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.11 Total: -36.27 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -2.36 Total: -4.30 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.07 -11.37 -39.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428838331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.951 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds