Wall clock time and date at job start Tue Mar 31 2020 09:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99660 * 2 1 4 4 N 1.46905 * 109.47063 * 126.01000 * 3 2 1 5 5 C 1.46894 * 111.00045 * 159.23192 * 4 3 2 6 6 C 1.50703 * 109.47035 * 291.73317 * 5 4 3 7 7 H 1.08002 * 119.99884 * 4.17132 * 6 5 4 8 8 C 1.37881 * 120.00010 * 184.16814 * 6 5 4 9 9 N 1.31514 * 119.99772 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99999 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47362 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47547 * 120.00222 * 10 8 6 13 13 H 1.48507 * 109.47284 * 240.00191 * 10 8 6 14 14 C 1.46900 * 110.99439 * 283.18512 * 4 3 2 15 15 H 1.09003 * 109.46893 * 193.17886 * 14 4 3 16 16 C 1.53003 * 109.47356 * 313.17048 * 14 4 3 17 17 C 1.52998 * 109.47437 * 73.17896 * 14 4 3 18 18 C 1.53001 * 109.47301 * 62.01382 * 17 14 4 19 19 S 1.81394 * 109.47042 * 180.02562 * 18 17 14 20 20 C 1.76202 * 103.00032 * 179.97438 * 19 18 17 21 21 C 1.38968 * 120.07831 * 359.71895 * 20 19 18 22 22 C 1.38084 * 119.92073 * 180.29796 * 21 20 19 23 23 C 1.38307 * 120.07993 * 359.97438 * 22 21 20 24 24 C 1.38304 * 120.15574 * 0.02562 * 23 22 21 25 25 C 1.38078 * 120.08394 * 0.02562 * 24 23 22 26 26 H 1.08004 * 120.00102 * 359.97438 * 1 2 3 27 27 H 1.07995 * 120.00079 * 179.97438 * 1 2 3 28 28 H 1.07996 * 119.99796 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47838 * 6.00878 * 3 2 1 30 30 H 1.08999 * 109.47187 * 246.00240 * 3 2 1 31 31 H 1.09003 * 109.47581 * 51.73449 * 5 4 3 32 32 H 1.09002 * 109.46877 * 171.73663 * 5 4 3 33 33 H 0.97005 * 119.99629 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.46472 * 69.03404 * 16 14 4 35 35 H 1.08991 * 109.47091 * 189.02992 * 16 14 4 36 36 H 1.08994 * 109.47358 * 309.03570 * 16 14 4 37 37 H 1.09004 * 109.46534 * 302.01041 * 17 14 4 38 38 H 1.09004 * 109.47236 * 182.01758 * 17 14 4 39 39 H 1.08994 * 109.47011 * 59.99871 * 18 17 14 40 40 H 1.08998 * 109.46897 * 300.00144 * 18 17 14 41 41 H 1.07998 * 120.04499 * 0.28393 * 21 20 19 42 42 H 1.08004 * 119.95976 * 179.97438 * 22 21 20 43 43 H 1.07997 * 119.91949 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.95366 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.03961 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0135 1.3221 1.1204 5 6 4.0814 2.3042 0.8902 6 6 4.9523 1.8414 -0.2493 7 1 4.6957 0.9460 -0.7959 8 6 6.0767 2.5612 -0.5940 9 7 6.3893 3.6514 0.0720 10 14 7.1558 1.9881 -2.0068 11 1 6.5901 0.7445 -2.5889 12 1 7.2073 3.0435 -3.0502 13 1 8.5277 1.7208 -1.5051 14 6 2.3240 1.5821 2.3912 15 1 3.0582 1.8211 3.1606 16 6 1.3641 2.7610 2.2188 17 6 1.5354 0.3388 2.8073 18 6 2.5010 -0.8272 3.0287 19 16 1.5659 -2.3014 3.5213 20 6 2.8236 -3.5182 3.7268 21 6 4.1546 -3.1895 3.4995 22 6 5.1369 -4.1472 3.6555 23 6 4.7976 -5.4323 4.0380 24 6 3.4741 -5.7631 4.2651 25 6 2.4863 -4.8108 4.1100 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3601 2.1308 0.1076 30 1 2.6071 1.4109 -0.9388 31 1 3.6401 3.2693 0.6415 32 1 4.6852 2.4024 1.7924 33 1 7.1805 4.1576 -0.1703 34 1 0.5389 2.4657 1.5707 35 1 0.9735 3.0569 3.1923 36 1 1.8959 3.6001 1.7704 37 1 0.8258 0.0790 2.0218 38 1 0.9952 0.5437 3.7317 39 1 3.2105 -0.5672 3.8141 40 1 3.0411 -1.0320 2.1043 41 1 4.4203 -2.1862 3.2010 42 1 6.1715 -3.8925 3.4787 43 1 5.5680 -6.1795 4.1589 44 1 3.2127 -6.7676 4.5632 45 1 1.4529 -5.0699 4.2870 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428838331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:16 Heat of formation + Delta-G solvation = 32.899269 kcal Electronic energy + Delta-G solvation = -22699.958513 eV Core-core repulsion = 19615.444423 eV Total energy + Delta-G solvation = -3084.514089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.97561 -39.78704 -35.31578 -34.56746 -33.58188 -32.03826 -31.85041 -30.64695 -28.56129 -26.62766 -25.28845 -23.73068 -23.52761 -22.85210 -21.23525 -20.04552 -18.65945 -18.50967 -17.31263 -17.16159 -16.54046 -16.05777 -15.96589 -15.71806 -15.36439 -15.31529 -14.72528 -14.59222 -14.36117 -14.25725 -14.07635 -13.91648 -13.54784 -13.40087 -13.03025 -12.74383 -12.70777 -12.48831 -12.35152 -12.34495 -12.15790 -12.01673 -11.95321 -11.62262 -11.51636 -11.25236 -11.03355 -10.66984 -10.61627 -9.92991 -9.82053 -8.91664 -8.33716 -8.19985 -6.28789 0.27665 0.42571 0.61380 1.38428 1.39804 1.47314 1.50847 1.52647 2.39326 2.78609 3.12135 3.36558 3.84338 3.94849 4.03315 4.06269 4.11181 4.23543 4.25519 4.34758 4.38018 4.51859 4.53166 4.59454 4.67933 4.76352 4.80849 4.81968 4.90971 4.97256 5.07638 5.09877 5.15306 5.18250 5.23316 5.34757 5.36766 5.42194 5.47325 5.57771 5.66511 5.82586 5.89815 6.00642 6.10307 6.42149 6.70701 6.88256 7.40620 8.90690 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011323 B = 0.004353 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.150568 B = 6430.468792 C = 7977.715886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.128 4.128 3 C 0.075 3.925 4 N -0.527 5.527 5 C 0.211 3.789 6 C -0.517 4.517 7 H 0.060 0.940 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.082 3.918 15 H 0.059 0.941 16 C -0.173 4.173 17 C -0.098 4.098 18 C -0.078 4.078 19 S -0.132 6.132 20 C -0.097 4.097 21 C -0.152 4.152 22 C -0.112 4.112 23 C -0.129 4.129 24 C -0.103 4.103 25 C -0.115 4.115 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.047 0.953 30 H 0.061 0.939 31 H -0.036 1.036 32 H 0.002 0.998 33 H 0.263 0.737 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.134 0.866 43 H 0.150 0.850 44 H 0.157 0.843 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.423 -15.102 7.747 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.146 4.146 3 C -0.052 4.052 4 N -0.250 5.250 5 C 0.085 3.915 6 C -0.555 4.555 7 H 0.078 0.922 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.206 1.206 14 C -0.029 4.029 15 H 0.077 0.923 16 C -0.232 4.232 17 C -0.136 4.136 18 C -0.226 4.226 19 S 0.113 5.887 20 C -0.209 4.209 21 C -0.176 4.176 22 C -0.132 4.132 23 C -0.149 4.149 24 C -0.122 4.122 25 C -0.138 4.138 26 H 0.119 0.881 27 H 0.132 0.868 28 H 0.117 0.883 29 H 0.065 0.935 30 H 0.079 0.921 31 H -0.018 1.018 32 H 0.020 0.980 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.131 0.869 42 H 0.152 0.848 43 H 0.168 0.832 44 H 0.174 0.826 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.318 -15.417 7.911 20.697 hybrid contribution 2.193 1.372 -0.902 2.739 sum -9.125 -14.045 7.009 18.157 Atomic orbital electron populations 1.23868 0.94924 1.02636 1.01591 1.22773 0.95891 0.97608 0.98348 1.21265 0.94002 0.95182 0.94753 1.62170 1.11158 1.50291 1.01414 1.19332 0.88644 0.88190 0.95307 1.21486 1.08720 1.09726 1.15573 0.92180 1.25814 0.99075 0.95027 0.99433 1.70085 1.27282 1.17683 1.42388 0.85443 0.78438 0.78429 0.78974 1.18958 1.20502 1.20564 1.21713 0.94903 0.93978 0.92259 0.92264 1.22325 1.00078 0.97994 1.02827 1.21662 0.97302 0.91502 1.03177 1.23461 1.00713 0.94392 1.04063 1.85057 1.13390 1.04864 1.85352 1.21954 0.96350 0.98300 1.04330 1.21366 0.92590 1.00545 1.03085 1.21359 0.99541 0.93748 0.98521 1.21534 0.97407 0.96406 0.99594 1.21456 0.92368 1.00046 0.98327 1.21036 1.00865 0.91013 1.00915 0.88065 0.86828 0.88276 0.93542 0.92069 1.01801 0.98001 0.92820 0.91119 0.90583 0.94625 0.88389 0.90224 0.90960 0.89785 0.86911 0.84770 0.83185 0.82567 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.62 12.75 67.78 0.86 -3.76 16 2 C -0.13 -3.84 7.32 25.64 0.19 -3.65 16 3 C 0.08 2.78 4.94 85.56 0.42 3.20 16 4 N -0.53 -21.47 3.71 -880.06 -3.26 -24.73 16 5 C 0.21 10.96 4.40 85.56 0.38 11.34 16 6 C -0.52 -28.85 8.34 25.60 0.21 -28.64 16 7 H 0.06 3.33 7.32 -2.91 -0.02 3.31 16 8 C 0.00 0.25 5.46 84.66 0.46 0.71 16 9 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 10 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 C 0.08 2.78 2.32 44.92 0.10 2.88 16 15 H 0.06 2.17 7.75 -2.39 -0.02 2.15 16 16 C -0.17 -5.24 8.08 71.98 0.58 -4.66 16 17 C -0.10 -2.72 4.23 30.59 0.13 -2.59 16 18 C -0.08 -2.30 4.17 71.98 0.30 -2.00 16 19 S -0.13 -3.50 21.92 -56.49 -1.24 -4.74 16 20 C -0.10 -2.59 6.11 22.62 0.14 -2.45 16 21 C -0.15 -4.26 9.36 22.41 0.21 -4.05 16 22 C -0.11 -2.64 10.04 22.25 0.22 -2.41 16 23 C -0.13 -2.43 10.04 22.30 0.22 -2.21 16 24 C -0.10 -1.85 10.04 22.25 0.22 -1.63 16 25 C -0.11 -2.53 9.79 22.41 0.22 -2.31 16 26 H 0.10 2.24 7.84 -2.91 -0.02 2.22 16 27 H 0.11 2.32 8.06 -2.91 -0.02 2.30 16 28 H 0.10 3.17 8.06 -2.91 -0.02 3.14 16 29 H 0.05 1.62 5.04 -2.39 -0.01 1.61 16 30 H 0.06 2.61 6.68 -2.39 -0.02 2.60 16 31 H -0.04 -2.00 7.20 -2.39 -0.02 -2.01 16 32 H 0.00 0.11 7.80 -2.39 -0.02 0.09 16 33 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 34 H 0.07 1.93 6.55 -2.39 -0.02 1.92 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.03 1.25 7.00 -2.39 -0.02 1.24 16 37 H 0.10 2.64 3.96 -2.38 -0.01 2.63 16 38 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.07 2.19 7.76 -2.39 -0.02 2.18 16 40 H 0.08 2.87 7.26 -2.39 -0.02 2.85 16 41 H 0.11 3.46 5.88 -2.91 -0.02 3.44 16 42 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 43 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 44 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -63.01 368.17 3.64 -59.37 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.95 Total: 21.51 kcal Atomic # 6 Polarization: -47.09 SS G_CDS: 4.88 Total: -42.21 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.98 Total: -80.31 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.24 Total: -4.74 kcal Total: -63.01 3.64 -59.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428838331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.269 kcal (2) G-P(sol) polarization free energy of solvation -63.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds