Wall clock time and date at job start Tue Mar 31 2020 08:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50695 * 120.00527 * 2 1 4 4 N 1.46892 * 109.47278 * 125.14260 * 3 2 1 5 5 C 1.46901 * 111.00316 * 199.64604 * 4 3 2 6 6 C 1.50696 * 109.46846 * 66.04806 * 5 4 3 7 7 H 1.08003 * 120.00358 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99759 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00175 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99926 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47243 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47094 * 119.99928 * 10 8 6 13 13 H 1.48496 * 109.47703 * 240.00150 * 10 8 6 14 14 C 1.46908 * 111.00082 * 75.69512 * 4 3 2 15 15 C 1.52997 * 109.47049 * 199.69034 * 14 4 3 16 16 C 1.52996 * 109.46976 * 174.85077 * 15 14 4 17 17 S 1.81397 * 109.47408 * 179.97438 * 16 15 14 18 18 C 1.81399 * 103.00481 * 180.02562 * 17 16 15 19 19 C 1.50695 * 109.47397 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99995 * 89.99719 * 19 18 17 21 21 C 1.38236 * 119.99864 * 179.97438 * 20 19 18 22 22 C 1.38233 * 120.00333 * 359.97438 * 21 20 19 23 23 C 1.38238 * 119.99386 * 0.27817 * 22 21 20 24 24 C 1.38228 * 120.00405 * 359.50596 * 23 22 21 25 25 H 1.07999 * 119.99535 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00202 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99507 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46894 * 5.13996 * 3 2 1 29 29 H 1.08999 * 109.47427 * 245.14503 * 3 2 1 30 30 H 1.08997 * 109.47190 * 186.04916 * 5 4 3 31 31 H 1.08999 * 109.47045 * 306.04634 * 5 4 3 32 32 H 0.97003 * 120.00034 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.47311 * 79.68679 * 14 4 3 34 34 H 1.09004 * 109.46392 * 319.68546 * 14 4 3 35 35 H 1.09005 * 109.47382 * 54.84993 * 15 14 4 36 36 H 1.09002 * 109.47392 * 294.85148 * 15 14 4 37 37 H 1.09005 * 109.47133 * 59.99763 * 16 15 14 38 38 H 1.08998 * 109.47377 * 299.99789 * 16 15 14 39 39 H 1.09001 * 109.46877 * 59.99520 * 18 17 16 40 40 H 1.09000 * 109.46619 * 299.99937 * 18 17 16 41 41 H 1.08000 * 119.99948 * 359.97438 * 20 19 18 42 42 H 1.08004 * 119.99557 * 179.97438 * 21 20 19 43 43 H 1.08001 * 120.00354 * 179.97438 * 22 21 20 44 44 H 1.08007 * 119.99376 * 179.72469 * 23 22 21 45 45 H 1.07999 * 120.00438 * 180.27941 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9988 1.3304 1.1325 5 6 3.4019 2.7065 1.4517 6 6 2.2078 3.4755 1.9555 7 1 1.2457 2.9906 2.0307 8 6 2.3435 4.7984 2.3196 9 7 3.5147 5.3893 2.2267 10 14 0.8632 5.7519 2.9435 11 1 -0.3285 4.8658 2.9525 12 1 1.1307 6.2349 4.3222 13 1 0.6107 6.9128 2.0526 14 6 4.1717 0.4869 0.8658 15 6 4.8599 0.1380 2.1869 16 6 6.0036 -0.8433 1.9225 17 16 6.8202 -1.2565 3.4887 18 6 8.1245 -2.4089 2.9774 19 6 8.9066 -2.8512 4.1872 20 6 8.5126 -3.9728 4.8928 21 6 9.2304 -4.3788 6.0022 22 6 10.3424 -3.6637 6.4058 23 6 10.7332 -2.5392 5.7032 24 6 10.0182 -2.1357 4.5912 25 1 -0.5399 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3589 2.1315 0.0921 29 1 2.6194 1.4037 -0.9324 30 1 4.1742 2.6898 2.2207 31 1 3.7923 3.1880 0.5552 32 1 3.6101 6.3199 2.4833 33 1 4.8687 1.0260 0.2242 34 1 3.8543 -0.4296 0.3683 35 1 4.1377 -0.3195 2.8632 36 1 5.2577 1.0459 2.6402 37 1 6.7258 -0.3859 1.2462 38 1 5.6059 -1.7513 1.4692 39 1 8.7932 -1.9121 2.2745 40 1 7.6739 -3.2779 2.4979 41 1 7.6440 -4.5317 4.5773 42 1 8.9223 -5.2548 6.5537 43 1 10.9029 -3.9807 7.2728 44 1 11.5995 -1.9779 6.0211 45 1 10.3262 -1.2597 4.0396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428861584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:58 Heat of formation + Delta-G solvation = 34.024265 kcal Electronic energy + Delta-G solvation = -21135.757987 eV Core-core repulsion = 18051.292682 eV Total energy + Delta-G solvation = -3084.465306 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.41105 -37.39907 -33.83921 -33.07221 -32.98828 -31.60982 -31.12570 -27.55431 -27.21603 -26.11495 -23.78931 -22.81133 -22.03431 -21.35228 -20.16487 -19.08492 -17.12443 -16.49348 -16.07251 -15.57964 -15.40359 -15.25386 -14.99596 -14.66500 -14.42828 -13.89026 -13.72226 -13.62480 -13.47424 -13.02382 -12.88091 -12.39933 -12.35606 -11.99286 -11.92787 -11.59358 -11.36462 -11.28666 -11.26007 -10.83755 -10.70789 -10.57785 -10.45794 -10.14509 -9.96544 -9.76226 -9.17820 -9.14900 -8.90025 -8.86588 -8.42906 -7.63167 -7.25094 -6.01948 -4.02875 0.83494 1.18186 1.88855 2.62265 2.74996 3.31827 3.39502 3.44410 3.63507 4.41136 4.43794 4.52804 4.77232 4.84898 4.89031 4.94088 5.06952 5.22989 5.30273 5.31033 5.33723 5.39063 5.52158 5.63424 5.64995 5.70884 5.73655 5.80663 5.89837 6.07221 6.13982 6.21219 6.27741 6.28538 6.33885 6.48288 6.57960 6.68900 6.74840 7.04882 7.25592 7.31594 7.33874 7.82120 8.09837 8.20107 8.54915 9.05265 9.61351 11.08937 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.002521 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.903246 B =11105.682317 C =12329.362471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C 0.083 3.917 4 N -0.532 5.532 5 C 0.191 3.809 6 C -0.507 4.507 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.063 3.937 15 C -0.096 4.096 16 C -0.082 4.082 17 S -0.245 6.245 18 C -0.053 4.053 19 C -0.069 4.069 20 C -0.102 4.102 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.102 4.102 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.028 0.972 30 H 0.034 0.966 31 H -0.010 1.010 32 H 0.260 0.740 33 H 0.026 0.974 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.413 -19.015 1.182 22.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.149 4.149 3 C -0.045 4.045 4 N -0.257 5.257 5 C 0.067 3.933 6 C -0.545 4.545 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.068 4.068 15 C -0.136 4.136 16 C -0.231 4.231 17 S -0.015 6.015 18 C -0.200 4.200 19 C -0.071 4.071 20 C -0.122 4.122 21 C -0.139 4.139 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.121 4.121 25 H 0.114 0.886 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.008 0.992 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.998 -18.633 2.607 21.793 hybrid contribution 0.037 0.512 -1.526 1.610 sum 11.035 -18.121 1.081 21.244 Atomic orbital electron populations 1.23696 0.95975 1.01191 1.03137 1.22986 0.95859 0.98453 0.97583 1.21176 0.96065 0.95538 0.91682 1.62080 1.12843 1.14173 1.36563 1.19793 0.96801 0.81414 0.95338 1.21203 0.95698 0.94974 1.42658 0.91784 1.24985 0.95981 0.97708 0.95920 1.69965 1.22896 1.12171 1.48710 0.86477 0.82920 0.79767 0.78496 1.19638 1.20985 1.21146 1.21984 0.92628 0.97088 0.95092 1.21277 0.94944 0.98355 0.98975 1.23433 1.00833 1.02785 0.96061 1.87366 1.38741 1.58671 1.16728 1.22285 0.98492 1.01070 0.98171 1.19254 0.95565 0.95838 0.96416 1.21058 0.99415 0.96369 0.95361 1.21135 0.95728 1.00144 0.96924 1.21189 0.97146 0.95676 0.99768 1.21147 1.00083 0.97015 0.95610 1.21080 0.94904 0.99171 0.96978 0.88605 0.89318 0.88481 0.88986 0.95428 0.94769 0.99230 0.92992 0.95587 0.92300 0.90368 0.90504 0.90384 0.90432 0.89347 0.89402 0.85831 0.85934 0.86081 0.85889 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.05 14.32 29.01 0.42 -2.64 16 2 C -0.13 -2.13 9.33 -36.03 -0.34 -2.46 16 3 C 0.08 1.61 5.24 -4.98 -0.03 1.58 16 4 N -0.53 -11.33 4.35 -237.52 -1.03 -12.37 16 5 C 0.19 4.94 4.55 -4.98 -0.02 4.92 16 6 C -0.51 -14.20 8.23 -34.44 -0.28 -14.48 16 7 H 0.06 1.79 7.31 -52.48 -0.38 1.41 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 10 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.06 1.09 4.81 -3.82 -0.02 1.07 16 15 C -0.10 -1.59 5.25 -26.73 -0.14 -1.73 16 16 C -0.08 -1.07 5.94 37.16 0.22 -0.85 16 17 S -0.25 -3.32 21.72 -107.50 -2.33 -5.66 16 18 C -0.05 -0.54 6.07 36.00 0.22 -0.32 16 19 C -0.07 -0.72 5.14 -104.63 -0.54 -1.26 16 20 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 21 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 22 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 23 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 24 C -0.10 -1.01 9.70 -39.59 -0.38 -1.40 16 25 H 0.10 1.48 7.84 -52.49 -0.41 1.07 16 26 H 0.09 1.14 8.06 -52.49 -0.42 0.71 16 27 H 0.10 1.43 7.27 -52.48 -0.38 1.05 16 28 H 0.09 1.98 6.23 -51.93 -0.32 1.65 16 29 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16 30 H 0.03 0.94 6.72 -51.93 -0.35 0.60 16 31 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.03 0.46 8.00 -51.93 -0.42 0.05 16 34 H 0.06 0.89 6.81 -51.93 -0.35 0.54 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.08 1.46 6.96 -51.93 -0.36 1.10 16 37 H 0.08 0.96 8.14 -51.92 -0.42 0.53 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.81 8.08 -51.92 -0.42 0.39 16 40 H 0.09 0.78 8.09 -51.92 -0.42 0.36 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 44 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 384.59 15.07 5.80 5.80 Total: -1.00 -30.53 384.59 -12.02 -42.55 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.60 Total: 0.70 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -2.57 Total: -21.79 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.30 Total: -38.34 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -2.33 Total: -5.66 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.53 -12.02 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428861584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.574 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds