Wall clock time and date at job start Tue Mar 31 2020 08:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00023 * 2 1 4 4 N 1.46899 * 109.47287 * 124.71655 * 3 2 1 5 5 C 1.46904 * 110.99666 * 300.64619 * 4 3 2 6 6 C 1.50695 * 109.47307 * 288.10883 * 5 4 3 7 7 H 1.08003 * 119.99663 * 3.33913 * 6 5 4 8 8 C 1.37872 * 120.00081 * 183.34573 * 6 5 4 9 9 N 1.31508 * 120.00461 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 120.00047 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46674 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47125 * 119.99441 * 10 8 6 13 13 H 1.48493 * 109.47111 * 239.99639 * 10 8 6 14 14 C 1.46899 * 110.99747 * 64.59933 * 4 3 2 15 15 C 1.50690 * 109.47399 * 66.04881 * 14 4 3 16 16 C 1.38305 * 119.92158 * 270.27230 * 15 14 4 17 17 C 1.38081 * 120.07985 * 180.22951 * 16 15 14 18 18 C 1.38977 * 119.92114 * 359.49574 * 17 16 15 19 19 S 1.76196 * 120.07965 * 180.27211 * 18 17 16 20 20 C 1.81395 * 102.99968 * 186.55206 * 19 18 17 21 21 C 1.53002 * 109.47291 * 70.28284 * 20 19 18 22 22 C 1.53002 * 109.47107 * 190.28276 * 20 19 18 23 23 C 1.38969 * 119.83572 * 0.25205 * 18 17 16 24 24 C 1.38082 * 119.92497 * 359.97438 * 23 18 17 25 25 H 1.08006 * 120.00046 * 180.02562 * 1 2 3 26 26 H 1.07999 * 120.00442 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00442 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47036 * 4.71071 * 3 2 1 29 29 H 1.09005 * 109.46937 * 244.71606 * 3 2 1 30 30 H 1.09002 * 109.47039 * 48.11101 * 5 4 3 31 31 H 1.09004 * 109.46770 * 168.10729 * 5 4 3 32 32 H 0.96996 * 120.00690 * 180.02562 * 9 8 6 33 33 H 1.09006 * 109.47392 * 306.04411 * 14 4 3 34 34 H 1.09008 * 109.46464 * 186.05043 * 14 4 3 35 35 H 1.07998 * 119.95849 * 359.97438 * 16 15 14 36 36 H 1.08000 * 120.03482 * 179.76694 * 17 16 15 37 37 H 1.09002 * 109.47030 * 310.28122 * 20 19 18 38 38 H 1.08997 * 109.46637 * 305.84444 * 21 20 19 39 39 H 1.08999 * 109.46849 * 65.83957 * 21 20 19 40 40 H 1.08992 * 109.47315 * 185.84668 * 21 20 19 41 41 H 1.09000 * 109.47279 * 60.00506 * 22 20 19 42 42 H 1.09004 * 109.46962 * 179.97438 * 22 20 19 43 43 H 1.08994 * 109.47363 * 299.99966 * 22 20 19 44 44 H 1.08010 * 120.03793 * 180.02562 * 23 18 17 45 45 H 1.07995 * 119.96455 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9914 1.3348 1.1384 5 6 2.2693 1.1933 2.4099 6 6 1.5070 2.4607 2.6985 7 1 1.5104 3.2681 1.9812 8 6 0.8052 2.5896 3.8782 9 7 0.8006 1.6063 4.7515 10 14 -0.1405 4.1605 4.2357 11 1 0.0233 5.1055 3.1019 12 1 -1.5803 3.8424 4.4116 13 1 0.3844 4.7824 5.4777 14 6 4.0252 0.3002 1.0020 15 6 4.9008 0.6180 -0.1825 16 6 4.5697 0.1334 -1.4349 17 6 5.3723 0.4187 -2.5217 18 6 6.5082 1.2024 -2.3579 19 16 7.5314 1.5750 -3.7432 20 6 8.9454 2.4248 -2.9892 21 6 9.7764 1.4203 -2.1883 22 6 9.8129 3.0440 -4.0870 23 6 6.8348 1.6919 -1.0990 24 6 6.0302 1.3987 -0.0158 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3581 2.1319 0.0844 29 1 2.6252 1.4003 -0.9293 30 1 1.5726 0.3578 2.3410 31 1 2.9818 1.0068 3.2135 32 1 0.3066 1.6968 5.5813 33 1 3.5510 -0.6700 0.8534 34 1 4.6332 0.2727 1.9063 35 1 3.6846 -0.4722 -1.5622 36 1 5.1151 0.0368 -3.4987 37 1 8.5852 3.2101 -2.3246 38 1 9.1339 0.9041 -1.4751 39 1 10.2220 0.6939 -2.8679 40 1 10.5652 1.9473 -1.6516 41 1 9.2209 3.7597 -4.6574 42 1 10.6624 3.5551 -3.6338 43 1 10.1731 2.2589 -4.7516 44 1 7.7167 2.3017 -0.9680 45 1 6.2836 1.7784 0.9629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428862843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:08 Heat of formation + Delta-G solvation = 40.340741 kcal Electronic energy + Delta-G solvation = -22301.318398 eV Core-core repulsion = 19217.126996 eV Total energy + Delta-G solvation = -3084.191403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.33226 -37.07590 -35.20654 -32.83101 -32.67157 -30.94659 -30.81040 -27.67067 -27.12214 -26.21606 -23.95940 -22.93109 -21.78506 -21.35779 -20.78937 -18.81416 -17.50147 -16.51457 -16.18079 -15.55277 -15.17847 -15.02326 -14.67033 -14.49657 -14.27046 -13.80614 -13.73924 -13.64330 -13.22463 -12.84442 -12.68981 -12.57936 -12.19276 -11.99715 -11.68071 -11.63408 -11.56159 -11.22870 -11.02673 -10.88852 -10.86354 -10.71032 -10.58310 -10.44733 -10.11568 -9.89825 -9.46158 -9.21509 -8.85387 -8.69430 -8.40153 -7.39931 -7.20471 -6.00484 -4.00779 1.30970 1.43893 1.51906 2.32468 2.87254 3.31489 3.39100 3.44019 3.81145 4.42148 4.45072 4.50142 4.83651 4.93020 5.03298 5.08865 5.21826 5.26430 5.33807 5.36922 5.40411 5.48419 5.51282 5.53261 5.57071 5.70777 5.73990 5.82396 5.86974 5.93193 6.09275 6.19702 6.25168 6.35861 6.40636 6.46616 6.66264 6.87784 7.04919 7.14299 7.25531 7.31685 7.42252 7.82236 8.09365 8.21241 8.54955 9.06367 9.62740 11.10302 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.003025 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.617601 B = 9254.869649 C = 9885.864059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.181 4.181 3 C 0.085 3.915 4 N -0.522 5.522 5 C 0.190 3.810 6 C -0.499 4.499 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.085 3.915 15 C -0.060 4.060 16 C -0.098 4.098 17 C -0.102 4.102 18 C -0.089 4.089 19 S -0.133 6.133 20 C -0.080 4.080 21 C -0.151 4.151 22 C -0.133 4.133 23 C -0.134 4.134 24 C -0.082 4.082 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.001 0.999 31 H 0.028 0.972 32 H 0.260 0.740 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.121 0.879 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.971 -2.173 -15.699 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.200 4.200 3 C -0.043 4.043 4 N -0.244 5.244 5 C 0.066 3.934 6 C -0.538 4.538 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.043 4.043 15 C -0.063 4.063 16 C -0.118 4.118 17 C -0.125 4.125 18 C -0.202 4.202 19 S 0.110 5.890 20 C -0.209 4.209 21 C -0.210 4.210 22 C -0.191 4.191 23 C -0.157 4.157 24 C -0.102 4.102 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.018 0.982 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.139 0.861 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 15.070 -1.930 -16.721 22.592 hybrid contribution -0.930 0.221 1.804 2.042 sum 14.140 -1.708 -14.917 20.625 Atomic orbital electron populations 1.23700 0.96051 1.01143 1.00869 1.23546 0.96713 0.99802 0.99968 1.21322 0.94567 0.94255 0.94111 1.62473 1.13408 1.44368 1.04193 1.19799 0.92529 0.96912 0.84195 1.21149 1.28613 1.00964 1.03060 0.92013 1.24953 0.96888 0.96545 0.96179 1.69957 1.42811 1.31745 1.09428 0.86498 0.79506 0.83523 0.78250 1.19680 1.21175 1.21083 1.21089 0.93882 0.94208 0.95124 1.20030 0.94976 0.96280 0.94975 1.21030 0.98861 0.99933 0.91951 1.20655 0.94076 0.98801 0.98980 1.21512 0.99520 1.03029 0.96135 1.85318 1.18983 1.72522 1.12172 1.23334 0.96379 1.00361 1.00808 1.22163 0.99928 0.98651 1.00277 1.21614 0.99104 1.01030 0.97390 1.21131 1.00856 1.01715 0.91990 1.20968 0.93990 0.96629 0.98590 0.89674 0.88480 0.88652 0.89963 0.91629 0.98170 0.95395 0.93075 0.94564 0.90473 0.85793 0.86014 0.88793 0.91537 0.91462 0.91694 0.91520 0.90901 0.91687 0.86107 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 14.32 29.02 0.42 -2.70 16 2 C -0.18 -3.21 7.33 -36.02 -0.26 -3.47 16 3 C 0.09 1.63 5.31 -4.97 -0.03 1.61 16 4 N -0.52 -10.95 4.65 -238.96 -1.11 -12.06 16 5 C 0.19 4.84 4.58 -4.98 -0.02 4.82 16 6 C -0.50 -13.87 8.65 -34.44 -0.30 -14.16 16 7 H 0.06 1.72 7.39 -52.48 -0.39 1.33 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 10 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.08 1.49 4.95 -4.98 -0.02 1.47 16 15 C -0.06 -0.92 4.90 -104.58 -0.51 -1.44 16 16 C -0.10 -1.37 7.87 -39.61 -0.31 -1.68 16 17 C -0.10 -1.35 9.79 -39.37 -0.39 -1.73 16 18 C -0.09 -1.17 5.97 -39.04 -0.23 -1.40 16 19 S -0.13 -1.48 21.30 -107.50 -2.29 -3.77 16 20 C -0.08 -0.69 2.59 -26.73 -0.07 -0.76 16 21 C -0.15 -1.20 8.72 37.16 0.32 -0.87 16 22 C -0.13 -0.90 9.20 37.16 0.34 -0.55 16 23 C -0.13 -1.74 8.06 -39.37 -0.32 -2.05 16 24 C -0.08 -1.18 9.69 -39.61 -0.38 -1.57 16 25 H 0.08 1.32 8.06 -52.48 -0.42 0.89 16 26 H 0.10 1.72 7.84 -52.49 -0.41 1.31 16 27 H 0.10 1.58 6.80 -52.49 -0.36 1.22 16 28 H 0.08 1.72 6.87 -51.93 -0.36 1.37 16 29 H 0.07 1.14 5.82 -51.93 -0.30 0.84 16 30 H 0.00 0.01 6.69 -51.93 -0.35 -0.33 16 31 H 0.03 0.77 7.81 -51.93 -0.41 0.36 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.04 0.62 6.30 -51.93 -0.33 0.29 16 34 H 0.08 1.36 7.80 -51.92 -0.41 0.96 16 35 H 0.12 1.63 7.86 -52.49 -0.41 1.21 16 36 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.09 0.83 6.80 -51.92 -0.35 0.47 16 38 H 0.07 0.61 6.19 -51.93 -0.32 0.29 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.12 1.34 5.04 -52.48 -0.26 1.08 16 45 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -29.70 369.91 -11.15 -40.85 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.17 Total: 1.66 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -1.87 Total: -23.04 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.37 Total: -37.92 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.29 Total: -3.77 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.70 -11.15 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428862843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.188 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds