Wall clock time and date at job start Tue Mar 31 2020 08:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00023 * 2 1 4 4 N 1.46899 * 109.47287 * 124.71655 * 3 2 1 5 5 C 1.46904 * 110.99666 * 300.64619 * 4 3 2 6 6 C 1.50695 * 109.47307 * 288.10883 * 5 4 3 7 7 H 1.08003 * 119.99663 * 3.33913 * 6 5 4 8 8 C 1.37872 * 120.00081 * 183.34573 * 6 5 4 9 9 N 1.31508 * 120.00461 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 120.00047 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46674 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47125 * 119.99441 * 10 8 6 13 13 H 1.48493 * 109.47111 * 239.99639 * 10 8 6 14 14 C 1.46899 * 110.99747 * 64.59933 * 4 3 2 15 15 C 1.50690 * 109.47399 * 66.04881 * 14 4 3 16 16 C 1.38305 * 119.92158 * 270.27230 * 15 14 4 17 17 C 1.38081 * 120.07985 * 180.22951 * 16 15 14 18 18 C 1.38977 * 119.92114 * 359.49574 * 17 16 15 19 19 S 1.76196 * 120.07965 * 180.27211 * 18 17 16 20 20 C 1.81395 * 102.99968 * 186.55206 * 19 18 17 21 21 C 1.53002 * 109.47291 * 70.28284 * 20 19 18 22 22 C 1.53002 * 109.47107 * 190.28276 * 20 19 18 23 23 C 1.38969 * 119.83572 * 0.25205 * 18 17 16 24 24 C 1.38082 * 119.92497 * 359.97438 * 23 18 17 25 25 H 1.08006 * 120.00046 * 180.02562 * 1 2 3 26 26 H 1.07999 * 120.00442 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00442 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47036 * 4.71071 * 3 2 1 29 29 H 1.09005 * 109.46937 * 244.71606 * 3 2 1 30 30 H 1.09002 * 109.47039 * 48.11101 * 5 4 3 31 31 H 1.09004 * 109.46770 * 168.10729 * 5 4 3 32 32 H 0.96996 * 120.00690 * 180.02562 * 9 8 6 33 33 H 1.09006 * 109.47392 * 306.04411 * 14 4 3 34 34 H 1.09008 * 109.46464 * 186.05043 * 14 4 3 35 35 H 1.07998 * 119.95849 * 359.97438 * 16 15 14 36 36 H 1.08000 * 120.03482 * 179.76694 * 17 16 15 37 37 H 1.09002 * 109.47030 * 310.28122 * 20 19 18 38 38 H 1.08997 * 109.46637 * 305.84444 * 21 20 19 39 39 H 1.08999 * 109.46849 * 65.83957 * 21 20 19 40 40 H 1.08992 * 109.47315 * 185.84668 * 21 20 19 41 41 H 1.09000 * 109.47279 * 60.00506 * 22 20 19 42 42 H 1.09004 * 109.46962 * 179.97438 * 22 20 19 43 43 H 1.08994 * 109.47363 * 299.99966 * 22 20 19 44 44 H 1.08010 * 120.03793 * 180.02562 * 23 18 17 45 45 H 1.07995 * 119.96455 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9914 1.3348 1.1384 5 6 2.2693 1.1933 2.4099 6 6 1.5070 2.4607 2.6985 7 1 1.5104 3.2681 1.9812 8 6 0.8052 2.5896 3.8782 9 7 0.8006 1.6063 4.7515 10 14 -0.1405 4.1605 4.2357 11 1 0.0233 5.1055 3.1019 12 1 -1.5803 3.8424 4.4116 13 1 0.3844 4.7824 5.4777 14 6 4.0252 0.3002 1.0020 15 6 4.9008 0.6180 -0.1825 16 6 4.5697 0.1334 -1.4349 17 6 5.3723 0.4187 -2.5217 18 6 6.5082 1.2024 -2.3579 19 16 7.5314 1.5750 -3.7432 20 6 8.9454 2.4248 -2.9892 21 6 9.7764 1.4203 -2.1883 22 6 9.8129 3.0440 -4.0870 23 6 6.8348 1.6919 -1.0990 24 6 6.0302 1.3987 -0.0158 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3581 2.1319 0.0844 29 1 2.6252 1.4003 -0.9293 30 1 1.5726 0.3578 2.3410 31 1 2.9818 1.0068 3.2135 32 1 0.3066 1.6968 5.5813 33 1 3.5510 -0.6700 0.8534 34 1 4.6332 0.2727 1.9063 35 1 3.6846 -0.4722 -1.5622 36 1 5.1151 0.0368 -3.4987 37 1 8.5852 3.2101 -2.3246 38 1 9.1339 0.9041 -1.4751 39 1 10.2220 0.6939 -2.8679 40 1 10.5652 1.9473 -1.6516 41 1 9.2209 3.7597 -4.6574 42 1 10.6624 3.5551 -3.6338 43 1 10.1731 2.2589 -4.7516 44 1 7.7167 2.3017 -0.9680 45 1 6.2836 1.7784 0.9629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428862843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:07 Heat of formation + Delta-G solvation = 25.887366 kcal Electronic energy + Delta-G solvation = -22301.945144 eV Core-core repulsion = 19217.126996 eV Total energy + Delta-G solvation = -3084.818148 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52810 -38.57479 -35.85776 -34.85823 -34.07311 -32.35673 -31.89870 -29.14033 -28.16411 -27.61663 -25.68065 -23.93366 -22.99937 -22.53659 -22.13601 -20.30059 -18.50037 -18.33480 -17.30180 -16.94864 -16.63537 -16.31445 -16.02772 -15.78425 -15.52066 -15.25465 -14.74176 -14.56476 -14.39193 -14.19604 -13.96821 -13.69287 -13.26476 -13.16563 -13.10437 -12.88831 -12.66951 -12.59437 -12.31654 -12.28809 -12.24201 -12.20877 -12.03303 -11.94110 -11.74449 -11.23609 -10.92504 -10.63505 -10.50573 -10.18187 -9.87059 -8.94880 -8.30857 -8.15859 -6.25026 0.22089 0.44707 0.58846 1.39651 1.41030 1.45199 1.46327 1.53892 2.41184 2.69307 3.15861 3.56054 3.77609 3.84320 3.88506 3.96711 4.00856 4.08001 4.23875 4.27066 4.40485 4.46213 4.55687 4.66977 4.71128 4.73684 4.76248 4.84220 4.87648 4.94773 4.97513 5.07581 5.12869 5.21898 5.23901 5.24909 5.29176 5.30638 5.40710 5.67431 5.72264 5.73214 5.90733 5.96010 6.11172 6.41419 6.64246 6.90202 7.43521 8.93846 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.003025 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.617601 B = 9254.869649 C = 9885.864059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.188 4.188 3 C 0.091 3.909 4 N -0.531 5.531 5 C 0.208 3.792 6 C -0.512 4.512 7 H 0.056 0.944 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.961 3.039 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.091 3.909 15 C -0.077 4.077 16 C -0.098 4.098 17 C -0.107 4.107 18 C -0.092 4.092 19 S -0.141 6.141 20 C -0.077 4.077 21 C -0.149 4.149 22 C -0.131 4.131 23 C -0.132 4.132 24 C -0.092 4.092 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.059 0.941 29 H 0.084 0.916 30 H -0.020 1.020 31 H 0.000 1.000 32 H 0.263 0.737 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.139 0.861 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.966 -1.468 -17.223 23.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.208 4.208 3 C -0.037 4.037 4 N -0.253 5.253 5 C 0.082 3.918 6 C -0.550 4.550 7 H 0.074 0.926 8 C -0.193 4.193 9 N -0.575 5.575 10 Si 0.786 3.214 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.205 1.205 14 C -0.037 4.037 15 C -0.080 4.080 16 C -0.118 4.118 17 C -0.130 4.130 18 C -0.205 4.205 19 S 0.102 5.898 20 C -0.205 4.205 21 C -0.208 4.208 22 C -0.189 4.189 23 C -0.156 4.156 24 C -0.112 4.112 25 H 0.125 0.875 26 H 0.107 0.893 27 H 0.128 0.872 28 H 0.077 0.923 29 H 0.102 0.898 30 H -0.002 1.002 31 H 0.018 0.982 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.157 0.843 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 16.078 -1.226 -18.274 24.371 hybrid contribution -1.123 -0.001 2.190 2.461 sum 14.955 -1.227 -16.084 21.996 Atomic orbital electron populations 1.23871 0.96085 1.01843 1.00021 1.23543 0.96950 0.99613 1.00676 1.21233 0.94178 0.94278 0.93987 1.62337 1.13814 1.46212 1.02962 1.19399 0.91419 0.95291 0.85669 1.21419 1.28939 1.01568 1.03116 0.92570 1.25788 0.97794 0.99772 0.95980 1.70073 1.43726 1.33740 1.09923 0.85455 0.78154 0.79575 0.78180 1.19008 1.20502 1.20521 1.21025 0.93096 0.93479 0.96089 1.19830 0.95410 0.98127 0.94597 1.21097 0.99292 0.99809 0.91578 1.20879 0.93995 0.98704 0.99409 1.21774 0.99657 1.02200 0.96869 1.85363 1.19990 1.72687 1.11725 1.23484 0.95434 1.00206 1.01384 1.22142 0.99981 0.98631 1.00048 1.21636 0.99288 1.01079 0.96909 1.21290 1.01089 1.01626 0.91547 1.21054 0.94195 0.96772 0.99187 0.87506 0.89315 0.87241 0.92298 0.89778 1.00213 0.98215 0.92854 0.94080 0.91361 0.85000 0.84413 0.88815 0.93011 0.91120 0.89891 0.91663 0.88946 0.91422 0.84321 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.17 14.32 67.79 0.97 -5.20 16 2 C -0.19 -6.63 7.33 25.66 0.19 -6.44 16 3 C 0.09 3.49 5.31 85.56 0.45 3.95 16 4 N -0.53 -22.75 4.65 -909.92 -4.23 -26.98 16 5 C 0.21 10.94 4.58 85.55 0.39 11.34 16 6 C -0.51 -29.02 8.65 25.60 0.22 -28.80 16 7 H 0.06 3.18 7.39 -2.91 -0.02 3.16 16 8 C 0.00 0.25 5.46 84.65 0.46 0.71 16 9 N -0.93 -56.13 13.29 21.44 0.28 -55.84 16 10 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 C 0.09 3.24 4.95 85.55 0.42 3.67 16 15 C -0.08 -2.35 4.90 -19.84 -0.10 -2.45 16 16 C -0.10 -2.64 7.87 22.25 0.18 -2.47 16 17 C -0.11 -2.66 9.79 22.41 0.22 -2.44 16 18 C -0.09 -2.27 5.97 22.62 0.13 -2.14 16 19 S -0.14 -2.88 21.30 -56.49 -1.20 -4.09 16 20 C -0.08 -1.14 2.59 30.60 0.08 -1.06 16 21 C -0.15 -2.02 8.72 71.98 0.63 -1.39 16 22 C -0.13 -1.41 9.20 71.98 0.66 -0.75 16 23 C -0.13 -3.28 8.06 22.41 0.18 -3.10 16 24 C -0.09 -2.64 9.69 22.25 0.22 -2.42 16 25 H 0.11 3.16 8.06 -2.91 -0.02 3.14 16 26 H 0.09 3.16 7.84 -2.91 -0.02 3.14 16 27 H 0.11 3.54 6.80 -2.91 -0.02 3.52 16 28 H 0.06 2.51 6.87 -2.39 -0.02 2.50 16 29 H 0.08 2.89 5.82 -2.38 -0.01 2.88 16 30 H -0.02 -1.11 6.69 -2.39 -0.02 -1.12 16 31 H 0.00 -0.02 7.81 -2.39 -0.02 -0.03 16 32 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 33 H 0.04 1.41 6.30 -2.38 -0.02 1.40 16 34 H 0.07 2.51 7.80 -2.38 -0.02 2.49 16 35 H 0.13 3.29 7.86 -2.91 -0.02 3.27 16 36 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.09 1.43 6.80 -2.39 -0.02 1.41 16 38 H 0.05 0.87 6.19 -2.39 -0.01 0.85 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.14 2.86 5.04 -2.91 -0.01 2.84 16 45 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -63.79 369.91 3.14 -60.65 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.95 Total: 18.55 kcal Atomic # 6 Polarization: -44.32 SS G_CDS: 5.31 Total: -39.01 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -3.95 Total: -82.82 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -1.20 Total: -4.09 kcal Total: -63.79 3.14 -60.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428862843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.534 kcal (2) G-P(sol) polarization free energy of solvation -63.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds