Wall clock time and date at job start Tue Mar 31 2020 09:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.47280 * 2 1 4 4 N 1.46901 * 109.46750 * 119.99605 * 2 1 3 5 5 C 1.46901 * 111.00382 * 270.85244 * 4 2 1 6 6 C 1.52995 * 109.47572 * 183.09417 * 5 4 2 7 7 C 1.50704 * 115.54796 * 34.93561 * 6 5 4 8 8 H 1.08004 * 119.99421 * 266.15124 * 7 6 5 9 9 C 1.37871 * 120.00442 * 86.15355 * 7 6 5 10 10 N 1.31519 * 119.99940 * 352.77117 * 9 7 6 11 11 Si 1.86802 * 120.00293 * 172.77369 * 9 7 6 12 12 H 1.48497 * 109.46950 * 90.00082 * 11 9 7 13 13 H 1.48495 * 109.47202 * 209.99714 * 11 9 7 14 14 H 1.48492 * 109.46962 * 330.00079 * 11 9 7 15 15 C 1.52995 * 117.50028 * 249.22865 * 6 5 4 16 16 C 1.52999 * 117.50210 * 180.60341 * 6 5 4 17 17 C 1.50696 * 109.47006 * 239.99311 * 2 1 3 18 18 C 1.32915 * 125.20562 * 105.49876 * 17 2 1 19 19 C 1.39204 * 115.70276 * 180.02562 * 18 17 2 20 20 C 1.34630 * 113.66710 * 359.97438 * 19 18 17 21 21 S 1.75730 * 125.21140 * 285.19582 * 17 2 1 22 22 C 1.51405 * 124.78948 * 180.02562 * 20 19 18 23 23 C 1.53164 * 108.69994 * 343.65091 * 22 20 19 24 24 C 1.53162 * 108.96159 * 49.67815 * 23 22 20 25 25 C 1.52278 * 123.50652 * 179.97438 * 19 18 17 26 26 H 1.08995 * 109.46375 * 60.00215 * 1 2 3 27 27 H 1.08997 * 109.47196 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47023 * 300.00410 * 1 2 3 29 29 H 1.00904 * 111.00248 * 34.80587 * 4 2 1 30 30 H 1.09003 * 109.46893 * 63.09306 * 5 4 2 31 31 H 1.09004 * 109.46571 * 303.09968 * 5 4 2 32 32 H 0.96996 * 120.00325 * 185.02751 * 10 9 7 33 33 H 1.08997 * 117.49946 * 359.97438 * 15 6 5 34 34 H 1.09003 * 117.50315 * 145.02104 * 15 6 5 35 35 H 1.08998 * 117.50165 * 214.98500 * 16 6 5 36 36 H 1.09004 * 117.49207 * 359.97438 * 16 6 5 37 37 H 1.08001 * 122.14786 * 359.97438 * 18 17 2 38 38 H 1.09000 * 109.60304 * 103.41456 * 22 20 19 39 39 H 1.08999 * 109.60154 * 223.89050 * 22 20 19 40 40 H 1.09003 * 109.55842 * 169.51806 * 23 22 20 41 41 H 1.08999 * 109.55972 * 289.83864 * 23 22 20 42 42 H 1.08995 * 109.49725 * 49.39518 * 24 23 22 43 43 H 1.09001 * 109.49704 * 169.46381 * 24 23 22 44 44 H 1.08996 * 109.58702 * 282.32889 * 25 19 18 45 45 H 1.09006 * 109.58085 * 42.73967 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.1759 0.2436 2.3209 6 6 2.7589 -0.4970 3.5260 7 6 3.7508 -1.5847 3.2029 8 1 3.4174 -2.6072 3.1034 9 6 5.0835 -1.2746 3.0345 10 7 5.4687 -0.0173 3.0142 11 14 6.3423 -2.6403 2.8350 12 1 6.4926 -2.9684 1.3945 13 1 7.6492 -2.1924 3.3795 14 1 5.8858 -3.8458 3.5722 15 6 1.8448 -0.7101 4.7342 16 6 2.9852 0.3073 4.8078 17 6 2.0324 -0.7105 -1.2303 18 6 2.5614 -0.1172 -2.2956 19 6 2.9606 -0.9665 -3.3237 20 6 2.7416 -2.2693 -3.0642 21 16 2.0153 -2.4509 -1.4733 22 6 3.0796 -3.4062 -4.0053 23 6 3.3098 -2.8321 -5.4064 24 6 4.2840 -1.6543 -5.3078 25 6 3.5868 -0.4774 -4.6228 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.4110 -1.4574 1.4493 30 1 1.2036 0.6592 2.5854 31 1 2.8488 1.0502 2.0297 32 1 6.3936 0.2037 2.8231 33 1 0.8281 -0.3223 4.6707 34 1 1.9604 -1.6372 5.2957 35 1 3.8511 0.0495 5.4175 36 1 2.7190 1.3642 4.7922 37 1 2.6735 0.9551 -2.3597 38 1 3.9846 -3.9079 -3.6625 39 1 2.2531 -4.1164 -4.0325 40 1 3.7328 -3.6023 -6.0514 41 1 2.3619 -2.4877 -5.8199 42 1 5.1554 -1.9509 -4.7240 43 1 4.5997 -1.3585 -6.3082 44 1 2.8097 -0.0820 -5.2768 45 1 4.3163 0.3029 -4.4056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430721678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:56 Heat of formation + Delta-G solvation = 37.796207 kcal Electronic energy + Delta-G solvation = -22906.263545 eV Core-core repulsion = 19821.961803 eV Total energy + Delta-G solvation = -3084.301742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.99391 -37.39077 -35.95557 -34.17314 -31.72196 -30.74747 -30.08146 -27.88946 -25.46884 -24.55748 -23.49485 -23.18133 -21.22859 -20.93397 -20.18534 -18.98752 -17.76088 -16.76590 -16.00760 -14.92733 -14.85596 -14.57298 -14.38111 -14.08549 -13.96399 -13.84718 -13.45209 -12.92189 -12.86391 -12.56174 -12.54972 -12.35286 -12.14085 -11.72112 -11.63800 -11.25680 -11.06604 -10.94866 -10.90502 -10.82015 -10.65620 -10.59294 -10.54924 -10.38518 -10.08050 -10.04095 -9.41074 -8.76585 -8.24680 -8.02410 -7.97804 -7.81718 -7.42082 -5.83533 -3.84058 1.41915 2.05020 2.49829 3.03902 3.42131 3.47997 3.50588 4.56912 4.70329 4.75791 4.83265 4.92471 5.15514 5.24996 5.30890 5.38531 5.43658 5.48692 5.51634 5.53575 5.57236 5.70708 5.76132 5.83650 5.94185 5.97657 5.99664 6.04787 6.12001 6.19679 6.25526 6.27449 6.34925 6.55042 6.57001 6.62178 6.74153 6.77675 6.90910 7.00207 7.15196 7.47321 7.52962 8.04613 8.07568 8.24983 8.62715 9.10763 9.78151 11.26331 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014595 B = 0.004650 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.063487 B = 6019.846133 C = 7071.364729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.147 3.853 3 H 0.087 0.913 4 N -0.646 5.646 5 C 0.112 3.888 6 C 0.048 3.952 7 C -0.463 4.463 8 H 0.056 0.944 9 C 0.077 3.923 10 N -0.884 5.884 11 Si 0.882 3.118 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.276 1.276 15 C -0.219 4.219 16 C -0.156 4.156 17 C -0.128 4.128 18 C -0.150 4.150 19 C -0.100 4.100 20 C -0.205 4.205 21 S 0.123 5.877 22 C -0.044 4.044 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.054 4.054 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.334 0.666 30 H -0.005 1.005 31 H 0.068 0.932 32 H 0.255 0.745 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.129 0.871 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.520 -1.463 -14.860 16.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.034 3.966 3 H 0.105 0.895 4 N -0.275 5.275 5 C -0.017 4.017 6 C 0.047 3.953 7 C -0.501 4.501 8 H 0.074 0.926 9 C -0.125 4.125 10 N -0.521 5.521 11 Si 0.710 3.290 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.201 1.201 15 C -0.257 4.257 16 C -0.195 4.195 17 C -0.247 4.247 18 C -0.180 4.180 19 C -0.113 4.113 20 C -0.322 4.322 21 S 0.391 5.609 22 C -0.083 4.083 23 C -0.151 4.151 24 C -0.158 4.158 25 C -0.094 4.094 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.152 0.848 30 H 0.013 0.987 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.147 0.853 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.168 -2.560 -14.054 15.983 hybrid contribution 0.411 0.829 -0.569 1.086 sum -6.757 -1.731 -14.623 16.202 Atomic orbital electron populations 1.22536 0.96944 1.02100 1.01903 1.20014 0.91585 0.96886 0.88094 0.89457 1.60318 1.52717 1.11036 1.03473 1.21501 0.95218 0.94085 0.90919 1.18886 0.95018 0.96844 0.84511 1.20088 0.90296 0.92056 1.47636 0.92618 1.24810 0.98023 0.94847 0.94816 1.69966 1.16779 1.16393 1.49004 0.86755 0.81168 0.82771 0.78274 1.20723 1.21647 1.20124 1.23110 0.93563 1.00766 1.08225 1.22475 0.98091 0.93760 1.05126 1.24301 1.05311 0.95921 0.99147 1.19760 1.03902 1.00596 0.93788 1.19402 1.02864 0.91787 0.97197 1.24701 1.10249 0.97803 0.99486 1.84099 1.60621 1.05606 1.10611 1.20211 1.01396 0.94057 0.92645 1.21547 0.99849 0.97813 0.95916 1.21544 0.98596 0.95364 1.00259 1.20474 0.98805 0.97515 0.92577 0.92405 0.92456 0.92236 0.84822 0.98704 0.91356 0.93507 0.92178 0.90604 0.90088 0.92214 0.85302 0.90675 0.91041 0.91577 0.91708 0.91597 0.91775 0.91135 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 9.16 37.16 0.34 -2.10 16 2 C 0.15 2.48 3.05 -68.86 -0.21 2.27 16 3 H 0.09 1.51 7.65 -51.93 -0.40 1.11 16 4 N -0.65 -13.02 5.31 -107.95 -0.57 -13.60 16 5 C 0.11 2.43 5.65 -3.83 -0.02 2.41 16 6 C 0.05 1.16 1.77 -155.66 -0.28 0.89 16 7 C -0.46 -12.53 8.05 -34.44 -0.28 -12.80 16 8 H 0.06 1.53 7.82 -52.48 -0.41 1.12 16 9 C 0.08 2.15 5.38 -17.82 -0.10 2.05 16 10 N -0.88 -25.50 12.91 55.43 0.72 -24.78 16 11 Si 0.88 22.00 29.55 -169.99 -5.02 16.97 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 15 C -0.22 -4.76 9.88 -26.73 -0.26 -5.03 16 16 C -0.16 -3.69 9.42 -26.73 -0.25 -3.94 16 17 C -0.13 -2.17 5.39 -36.15 -0.19 -2.37 16 18 C -0.15 -2.39 9.84 -41.06 -0.40 -2.80 16 19 C -0.10 -1.46 5.78 -104.76 -0.61 -2.07 16 20 C -0.20 -3.03 6.35 -35.24 -0.22 -3.26 16 21 S 0.12 1.99 23.15 -107.50 -2.49 -0.50 16 22 C -0.04 -0.52 6.26 -27.45 -0.17 -0.69 16 23 C -0.11 -1.09 5.94 -26.56 -0.16 -1.25 16 24 C -0.12 -1.22 5.88 -26.66 -0.16 -1.38 16 25 C -0.05 -0.63 6.15 -27.11 -0.17 -0.79 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 28 H 0.06 0.81 7.81 -51.93 -0.41 0.40 16 29 H 0.33 6.52 8.44 -39.29 -0.33 6.19 16 30 H -0.01 -0.10 7.58 -51.93 -0.39 -0.49 16 31 H 0.07 1.65 7.98 -51.93 -0.41 1.23 16 32 H 0.26 7.17 8.32 -40.82 -0.34 6.83 16 33 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 34 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 35 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 42 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -29.12 373.63 -12.70 -41.81 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.82 Total: 5.30 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: -3.14 Total: -30.84 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.14 Total: -38.38 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.49 Total: -0.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.12 -12.70 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430721678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.611 kcal (2) G-P(sol) polarization free energy of solvation -29.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds