Wall clock time and date at job start Tue Mar 31 2020 09:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.76195 * 103.00318 * 2 1 4 4 C 1.39000 * 120.07913 * 3.36819 * 3 2 1 5 5 C 1.38060 * 119.91989 * 179.97438 * 4 3 2 6 6 C 1.38317 * 120.08050 * 0.02562 * 5 4 3 7 7 C 1.38277 * 120.16375 * 359.97438 * 6 5 4 8 8 C 1.38108 * 120.07888 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.03984 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47146 * 271.23111 * 9 8 7 11 11 H 1.08998 * 109.46823 * 59.67912 * 10 9 8 12 12 C 1.52994 * 109.47116 * 179.67911 * 10 9 8 13 13 N 1.46901 * 109.46968 * 299.68196 * 10 9 8 14 14 C 1.46896 * 110.99881 * 155.50535 * 13 10 9 15 15 C 1.53003 * 109.47073 * 185.12366 * 14 13 10 16 16 C 1.50698 * 115.54854 * 279.94909 * 15 14 13 17 17 H 1.08007 * 119.99955 * 144.06925 * 16 15 14 18 18 C 1.37874 * 120.00025 * 324.06034 * 16 15 14 19 19 N 1.31514 * 120.00187 * 336.67985 * 18 16 15 20 20 Si 1.86799 * 119.99881 * 156.67199 * 18 16 15 21 21 H 1.48502 * 109.47100 * 65.01032 * 20 18 16 22 22 H 1.48502 * 109.47136 * 185.00508 * 20 18 16 23 23 H 1.48497 * 109.47549 * 305.00433 * 20 18 16 24 24 C 1.52998 * 117.50112 * 134.23762 * 15 14 13 25 25 C 1.53002 * 60.00117 * 252.50958 * 24 15 14 26 26 H 1.09005 * 109.47550 * 182.94830 * 1 2 3 27 27 H 1.09000 * 109.47436 * 302.94999 * 1 2 3 28 28 H 1.09003 * 109.47442 * 62.95146 * 1 2 3 29 29 H 1.08004 * 120.04061 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.95791 * 180.27585 * 5 4 3 31 31 H 1.08006 * 119.91769 * 179.97438 * 6 5 4 32 32 H 1.08002 * 119.96296 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47205 * 31.22973 * 9 8 7 34 34 H 1.09003 * 109.47378 * 151.22974 * 9 8 7 35 35 H 1.09005 * 109.47435 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.47719 * 300.00088 * 12 10 9 37 37 H 1.08998 * 109.47274 * 60.00277 * 12 10 9 38 38 H 1.00906 * 110.99736 * 279.45726 * 13 10 9 39 39 H 1.09000 * 109.47351 * 305.11894 * 14 13 10 40 40 H 1.08999 * 109.47521 * 65.12239 * 14 13 10 41 41 H 0.96999 * 120.00247 * 185.03005 * 19 18 16 42 42 H 1.09001 * 117.49714 * 0.02562 * 24 15 14 43 43 H 1.08997 * 117.49895 * 145.02198 * 24 15 14 44 44 H 1.08998 * 117.49696 * 252.51027 * 25 24 15 45 45 H 1.09000 * 117.51837 * 107.48152 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1972 2.6657 0.0707 5 6 1.5116 4.0101 0.0710 6 6 2.8329 4.4130 0.0005 7 6 3.8435 3.4719 -0.0699 8 6 3.5365 2.1254 -0.0706 9 6 4.6386 1.1004 -0.1480 10 6 4.9499 0.7960 -1.6148 11 1 5.2626 1.7112 -2.1173 12 6 6.0743 -0.2386 -1.6934 13 7 3.7478 0.2636 -2.2701 14 6 3.7914 0.4972 -3.7198 15 6 2.4717 0.0461 -4.3489 16 6 2.3382 -1.4360 -4.5868 17 1 1.3806 -1.9192 -4.4599 18 6 3.4383 -2.1751 -4.9666 19 7 4.4549 -1.5853 -5.5568 20 14 3.4850 -4.0142 -4.6428 21 1 2.4274 -4.6844 -5.4412 22 1 4.8138 -4.5517 -5.0313 23 1 3.2512 -4.2687 -3.1986 24 6 1.8134 0.9865 -5.3604 25 6 1.2066 0.8169 -3.9661 26 1 -0.3634 -1.0263 0.0529 27 1 -0.3634 0.5589 0.8623 28 1 -0.3634 0.4673 -0.9153 29 1 0.1652 2.3518 0.1253 30 1 0.7251 4.7479 0.1304 31 1 3.0758 5.4654 0.0005 32 1 4.8741 3.7902 -0.1243 33 1 5.5321 1.4902 0.3397 34 1 4.3205 0.1863 0.3533 35 1 6.2958 -0.4559 -2.7383 36 1 6.9662 0.1563 -1.2071 37 1 5.7616 -1.1539 -1.1908 38 1 3.6287 -0.7172 -2.0653 39 1 3.9412 1.5595 -3.9123 40 1 4.6140 -0.0705 -4.1547 41 1 5.1965 -2.1148 -5.8895 42 1 2.3207 1.9265 -5.5779 43 1 1.2836 0.5334 -6.1982 44 1 0.2778 0.2520 -3.8868 45 1 1.3145 1.6451 -3.2657 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430742468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:50 Heat of formation + Delta-G solvation = 46.329207 kcal Electronic energy + Delta-G solvation = -23941.064387 eV Core-core repulsion = 20857.132663 eV Total energy + Delta-G solvation = -3083.931723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.05087 -37.13296 -35.52528 -32.13753 -31.89767 -30.95230 -29.35442 -28.50349 -26.13109 -25.58488 -23.85667 -22.49681 -21.46679 -20.91095 -19.92693 -18.85403 -17.22516 -16.10147 -15.71705 -15.29385 -14.69818 -14.41219 -14.17774 -14.00958 -13.85174 -13.74301 -13.54150 -13.11702 -13.03811 -12.37434 -12.27306 -12.21105 -11.88631 -11.68883 -11.64877 -11.25879 -11.10860 -10.90763 -10.81241 -10.77635 -10.61578 -10.42021 -10.29770 -10.07376 -9.59243 -9.28643 -9.05691 -8.98488 -8.51119 -8.45027 -8.00940 -7.19161 -6.64811 -6.02888 -3.96004 1.56879 1.65772 2.02765 2.91420 3.28638 3.35472 3.40542 3.99431 4.40406 4.91264 5.04284 5.07922 5.18365 5.25129 5.29476 5.37652 5.49167 5.57856 5.69675 5.73666 5.77553 5.88157 5.92891 5.95564 6.07378 6.16226 6.27521 6.29390 6.35161 6.49366 6.56204 6.65349 6.68212 6.73220 6.81082 6.86915 6.95496 7.07945 7.15248 7.21050 7.29421 7.55273 7.68301 8.04478 8.29327 8.55885 8.62044 8.97787 9.56412 10.97538 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.005612 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.663150 B = 4987.721771 C = 5212.799631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 S -0.061 6.061 3 C -0.051 4.051 4 C -0.140 4.140 5 C -0.111 4.111 6 C -0.135 4.135 7 C -0.107 4.107 8 C -0.039 4.039 9 C -0.073 4.073 10 C 0.090 3.910 11 H 0.067 0.933 12 C -0.180 4.180 13 N -0.662 5.662 14 C 0.090 3.910 15 C 0.069 3.931 16 C -0.488 4.488 17 H 0.058 0.942 18 C 0.076 3.924 19 N -0.869 5.869 20 Si 0.875 3.125 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.273 1.273 24 C -0.211 4.211 25 C -0.187 4.187 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.345 0.655 39 H 0.027 0.973 40 H 0.077 0.923 41 H 0.260 0.740 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.400 7.303 12.770 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 S 0.184 5.816 3 C -0.164 4.164 4 C -0.165 4.165 5 C -0.131 4.131 6 C -0.156 4.156 7 C -0.127 4.127 8 C -0.045 4.045 9 C -0.111 4.111 10 C -0.021 4.021 11 H 0.086 0.914 12 C -0.239 4.239 13 N -0.293 5.293 14 C -0.039 4.039 15 C 0.068 3.932 16 C -0.525 4.525 17 H 0.076 0.924 18 C -0.128 4.128 19 N -0.505 5.505 20 Si 0.703 3.297 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.198 1.198 24 C -0.249 4.249 25 C -0.224 4.224 26 H 0.119 0.881 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.165 0.835 39 H 0.045 0.955 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.941 6.705 12.863 14.536 hybrid contribution -0.290 -0.346 -0.442 0.632 sum -1.230 6.359 12.421 14.008 Atomic orbital electron populations 1.23729 0.97898 1.06342 1.04875 1.85526 1.03183 1.02311 1.90571 1.21567 0.95673 0.97043 1.02106 1.21062 0.98002 0.93249 1.04167 1.20865 0.96317 0.95179 1.00749 1.20960 0.92946 0.98935 1.02755 1.20886 0.98954 0.92226 1.00640 1.19293 0.92612 0.93932 0.98687 1.20714 0.95551 0.97246 0.97597 1.21459 0.90093 0.97412 0.93157 0.91443 1.22519 0.99059 0.99862 1.02498 1.60709 1.34306 1.23278 1.11054 1.21593 0.99665 0.97037 0.85569 1.18747 0.88420 0.91486 0.94508 1.20469 0.94885 0.90646 1.46481 0.92425 1.24900 0.95696 0.97838 0.94328 1.69983 1.10005 1.35523 1.34999 0.86916 0.77096 0.86370 0.79346 1.20454 1.21465 1.19802 1.22970 1.07693 1.01614 0.92645 1.22586 0.99034 1.03612 0.97214 0.88073 0.91015 0.89764 0.86560 0.86722 0.86734 0.86423 0.91400 0.90843 0.91901 0.93399 0.92827 0.83537 0.95481 0.90485 0.92957 0.92399 0.91032 0.91796 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.19 101.05 0.93 -1.10 16 2 S -0.06 -0.94 18.82 -107.50 -2.02 -2.97 16 3 C -0.05 -0.79 5.83 -39.04 -0.23 -1.02 16 4 C -0.14 -2.02 9.36 -39.36 -0.37 -2.39 16 5 C -0.11 -1.47 10.04 -39.62 -0.40 -1.86 16 6 C -0.13 -1.75 10.04 -39.54 -0.40 -2.14 16 7 C -0.11 -1.48 9.70 -39.61 -0.38 -1.86 16 8 C -0.04 -0.60 4.88 -104.41 -0.51 -1.11 16 9 C -0.07 -1.06 4.71 -27.88 -0.13 -1.19 16 10 C 0.09 1.50 2.63 -67.71 -0.18 1.32 16 11 H 0.07 1.17 7.73 -51.93 -0.40 0.76 16 12 C -0.18 -2.87 9.16 37.15 0.34 -2.53 16 13 N -0.66 -12.91 3.95 -106.73 -0.42 -13.33 16 14 C 0.09 2.05 5.16 -3.82 -0.02 2.03 16 15 C 0.07 1.69 1.91 -155.66 -0.30 1.39 16 16 C -0.49 -12.98 8.96 -34.44 -0.31 -13.29 16 17 H 0.06 1.57 7.92 -52.48 -0.42 1.15 16 18 C 0.08 1.99 5.00 -17.82 -0.09 1.90 16 19 N -0.87 -23.60 11.24 55.43 0.62 -22.97 16 20 Si 0.88 20.45 29.60 -169.99 -5.03 15.41 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 24 C -0.21 -5.01 9.88 -26.73 -0.26 -5.27 16 25 C -0.19 -4.20 9.92 -26.73 -0.27 -4.46 16 26 H 0.10 1.17 8.14 -51.92 -0.42 0.74 16 27 H 0.07 0.77 7.42 -51.92 -0.39 0.39 16 28 H 0.08 1.14 8.02 -51.92 -0.42 0.72 16 29 H 0.12 1.50 5.88 -52.48 -0.31 1.19 16 30 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 34 H 0.07 1.10 6.73 -51.93 -0.35 0.75 16 35 H 0.06 1.14 7.52 -51.93 -0.39 0.75 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 38 H 0.35 7.28 8.17 -39.29 -0.32 6.96 16 39 H 0.03 0.62 7.74 -51.93 -0.40 0.22 16 40 H 0.08 1.95 4.89 -51.93 -0.25 1.70 16 41 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 42 H 0.06 1.32 8.08 -51.93 -0.42 0.90 16 43 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 44 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -27.25 370.84 -11.26 -38.50 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -7.42 Total: 11.34 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: -2.57 Total: -31.57 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.20 Total: -36.31 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.41 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.02 Total: -2.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.25 -11.26 -38.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430742468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.833 kcal (2) G-P(sol) polarization free energy of solvation -27.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds