Wall clock time and date at job start Tue Mar 31 2020 09:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.76195 * 103.00318 * 2 1 4 4 C 1.39000 * 120.07913 * 3.36819 * 3 2 1 5 5 C 1.38060 * 119.91989 * 179.97438 * 4 3 2 6 6 C 1.38317 * 120.08050 * 0.02562 * 5 4 3 7 7 C 1.38277 * 120.16375 * 359.97438 * 6 5 4 8 8 C 1.38108 * 120.07888 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.03984 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47146 * 271.23111 * 9 8 7 11 11 H 1.08998 * 109.46823 * 59.67912 * 10 9 8 12 12 C 1.52994 * 109.47116 * 179.67911 * 10 9 8 13 13 N 1.46901 * 109.46968 * 299.68196 * 10 9 8 14 14 C 1.46896 * 110.99881 * 155.50535 * 13 10 9 15 15 C 1.53003 * 109.47073 * 185.12366 * 14 13 10 16 16 C 1.50698 * 115.54854 * 279.94909 * 15 14 13 17 17 H 1.08007 * 119.99955 * 144.06925 * 16 15 14 18 18 C 1.37874 * 120.00025 * 324.06034 * 16 15 14 19 19 N 1.31514 * 120.00187 * 336.67985 * 18 16 15 20 20 Si 1.86799 * 119.99881 * 156.67199 * 18 16 15 21 21 H 1.48502 * 109.47100 * 65.01032 * 20 18 16 22 22 H 1.48502 * 109.47136 * 185.00508 * 20 18 16 23 23 H 1.48497 * 109.47549 * 305.00433 * 20 18 16 24 24 C 1.52998 * 117.50112 * 134.23762 * 15 14 13 25 25 C 1.53002 * 60.00117 * 252.50958 * 24 15 14 26 26 H 1.09005 * 109.47550 * 182.94830 * 1 2 3 27 27 H 1.09000 * 109.47436 * 302.94999 * 1 2 3 28 28 H 1.09003 * 109.47442 * 62.95146 * 1 2 3 29 29 H 1.08004 * 120.04061 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.95791 * 180.27585 * 5 4 3 31 31 H 1.08006 * 119.91769 * 179.97438 * 6 5 4 32 32 H 1.08002 * 119.96296 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47205 * 31.22973 * 9 8 7 34 34 H 1.09003 * 109.47378 * 151.22974 * 9 8 7 35 35 H 1.09005 * 109.47435 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.47719 * 300.00088 * 12 10 9 37 37 H 1.08998 * 109.47274 * 60.00277 * 12 10 9 38 38 H 1.00906 * 110.99736 * 279.45726 * 13 10 9 39 39 H 1.09000 * 109.47351 * 305.11894 * 14 13 10 40 40 H 1.08999 * 109.47521 * 65.12239 * 14 13 10 41 41 H 0.96999 * 120.00247 * 185.03005 * 19 18 16 42 42 H 1.09001 * 117.49714 * 0.02562 * 24 15 14 43 43 H 1.08997 * 117.49895 * 145.02198 * 24 15 14 44 44 H 1.08998 * 117.49696 * 252.51027 * 25 24 15 45 45 H 1.09000 * 117.51837 * 107.48152 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1972 2.6657 0.0707 5 6 1.5116 4.0101 0.0710 6 6 2.8329 4.4130 0.0005 7 6 3.8435 3.4719 -0.0699 8 6 3.5365 2.1254 -0.0706 9 6 4.6386 1.1004 -0.1480 10 6 4.9499 0.7960 -1.6148 11 1 5.2626 1.7112 -2.1173 12 6 6.0743 -0.2386 -1.6934 13 7 3.7478 0.2636 -2.2701 14 6 3.7914 0.4972 -3.7198 15 6 2.4717 0.0461 -4.3489 16 6 2.3382 -1.4360 -4.5868 17 1 1.3806 -1.9192 -4.4599 18 6 3.4383 -2.1751 -4.9666 19 7 4.4549 -1.5853 -5.5568 20 14 3.4850 -4.0142 -4.6428 21 1 2.4274 -4.6844 -5.4412 22 1 4.8138 -4.5517 -5.0313 23 1 3.2512 -4.2687 -3.1986 24 6 1.8134 0.9865 -5.3604 25 6 1.2066 0.8169 -3.9661 26 1 -0.3634 -1.0263 0.0529 27 1 -0.3634 0.5589 0.8623 28 1 -0.3634 0.4673 -0.9153 29 1 0.1652 2.3518 0.1253 30 1 0.7251 4.7479 0.1304 31 1 3.0758 5.4654 0.0005 32 1 4.8741 3.7902 -0.1243 33 1 5.5321 1.4902 0.3397 34 1 4.3205 0.1863 0.3533 35 1 6.2958 -0.4559 -2.7383 36 1 6.9662 0.1563 -1.2071 37 1 5.7616 -1.1539 -1.1908 38 1 3.6287 -0.7172 -2.0653 39 1 3.9412 1.5595 -3.9123 40 1 4.6140 -0.0705 -4.1547 41 1 5.1965 -2.1148 -5.8895 42 1 2.3207 1.9265 -5.5779 43 1 1.2836 0.5334 -6.1982 44 1 0.2778 0.2520 -3.8868 45 1 1.3145 1.6451 -3.2657 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430742468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:49 Heat of formation + Delta-G solvation = 35.301862 kcal Electronic energy + Delta-G solvation = -23941.542568 eV Core-core repulsion = 20857.132663 eV Total energy + Delta-G solvation = -3084.409905 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.14735 -38.80727 -37.05847 -34.15836 -33.16644 -31.98359 -30.76909 -29.51369 -27.61255 -27.29368 -25.56669 -23.54057 -22.85676 -22.55203 -21.26987 -20.74983 -18.32205 -17.99089 -16.82325 -16.66973 -16.46218 -15.80583 -15.64788 -15.50410 -15.21636 -14.85606 -14.76440 -14.43900 -14.29644 -13.99313 -13.54213 -13.39462 -13.28533 -13.09453 -13.02179 -12.82357 -12.77811 -12.55298 -12.48718 -12.17018 -12.03173 -11.97885 -11.82131 -11.68658 -10.96587 -10.92972 -10.71055 -10.43710 -10.34320 -9.93634 -9.53320 -8.77577 -8.06232 -7.83938 -6.04273 0.51533 0.60238 0.94768 1.40847 1.45747 1.52728 1.83632 2.44667 2.94042 3.01286 3.52241 3.89918 3.96484 4.09926 4.24256 4.27982 4.35961 4.37997 4.39108 4.45772 4.56475 4.58318 4.71909 4.73231 4.80248 4.88306 4.92010 4.94948 4.99322 5.06274 5.07306 5.12561 5.19753 5.29162 5.33426 5.36551 5.43818 5.55014 5.65623 5.68498 5.70991 5.79227 6.08059 6.19986 6.55705 6.66909 6.82322 7.02055 7.50174 8.93604 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.005612 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.663150 B = 4987.721771 C = 5212.799631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.107 6.107 3 C -0.064 4.064 4 C -0.154 4.154 5 C -0.116 4.116 6 C -0.137 4.137 7 C -0.115 4.115 8 C -0.060 4.060 9 C -0.063 4.063 10 C 0.091 3.909 11 H 0.061 0.939 12 C -0.172 4.172 13 N -0.651 5.651 14 C 0.105 3.895 15 C 0.051 3.949 16 C -0.505 4.505 17 H 0.046 0.954 18 C 0.043 3.957 19 N -0.890 5.890 20 Si 0.930 3.070 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.267 1.267 24 C -0.218 4.218 25 C -0.159 4.159 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.126 0.874 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.335 0.665 39 H 0.019 0.981 40 H 0.052 0.948 41 H 0.261 0.739 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 8.185 14.193 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.138 5.862 3 C -0.177 4.177 4 C -0.178 4.178 5 C -0.135 4.135 6 C -0.158 4.158 7 C -0.134 4.134 8 C -0.066 4.066 9 C -0.101 4.101 10 C -0.020 4.020 11 H 0.079 0.921 12 C -0.231 4.231 13 N -0.281 5.281 14 C -0.024 4.024 15 C 0.050 3.950 16 C -0.542 4.542 17 H 0.064 0.936 18 C -0.159 4.159 19 N -0.527 5.527 20 Si 0.756 3.244 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.192 1.192 24 C -0.257 4.257 25 C -0.196 4.196 26 H 0.129 0.871 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.144 0.856 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.154 0.846 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.067 7.602 14.296 16.226 hybrid contribution -0.283 -0.543 -0.886 1.077 sum -1.351 7.059 13.410 15.214 Atomic orbital electron populations 1.23721 0.95435 1.07265 1.05273 1.85582 1.06048 1.03624 1.90981 1.21667 0.96307 0.96695 1.03071 1.21311 0.98355 0.93787 1.04344 1.21227 0.97314 0.95208 0.99762 1.21331 0.92691 1.00224 1.01547 1.21186 1.00292 0.91837 1.00122 1.19474 0.92634 0.94720 0.99734 1.20612 0.96584 0.97231 0.95698 1.21523 0.89185 0.96966 0.94340 0.92088 1.22416 1.00048 0.99780 1.00883 1.60700 1.36140 1.22459 1.08841 1.21281 0.97920 0.95730 0.87484 1.18855 0.89909 0.90825 0.95373 1.20613 0.94644 0.91987 1.46962 0.93613 1.25416 0.95350 1.01205 0.93932 1.70082 1.10374 1.36727 1.35492 0.86054 0.76896 0.82147 0.79276 1.20456 1.21272 1.19232 1.22970 1.08053 1.01722 0.92921 1.22428 0.98152 1.02902 0.96130 0.87090 0.89009 0.90680 0.85624 0.84298 0.84125 0.84631 0.88984 0.91411 0.94729 0.90566 0.92941 0.84619 0.96278 0.93037 0.93003 0.91790 0.92023 0.91640 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.19 113.37 1.04 -2.56 16 2 S -0.11 -3.26 18.82 -56.49 -1.06 -4.32 16 3 C -0.06 -1.93 5.83 22.62 0.13 -1.80 16 4 C -0.15 -4.16 9.36 22.41 0.21 -3.95 16 5 C -0.12 -2.75 10.04 22.25 0.22 -2.52 16 6 C -0.14 -3.17 10.04 22.30 0.22 -2.94 16 7 C -0.11 -2.90 9.70 22.25 0.22 -2.69 16 8 C -0.06 -1.73 4.88 -19.73 -0.10 -1.82 16 9 C -0.06 -1.75 4.71 29.85 0.14 -1.61 16 10 C 0.09 2.96 2.63 44.91 0.12 3.07 16 11 H 0.06 2.07 7.73 -2.39 -0.02 2.05 16 12 C -0.17 -5.39 9.16 71.98 0.66 -4.73 16 13 N -0.65 -25.46 3.95 -491.58 -1.94 -27.40 16 14 C 0.11 4.87 5.16 86.31 0.45 5.31 16 15 C 0.05 2.52 1.91 -52.93 -0.10 2.42 16 16 C -0.50 -27.15 8.96 25.60 0.23 -26.92 16 17 H 0.05 2.51 7.92 -2.91 -0.02 2.49 16 18 C 0.04 2.26 5.00 84.65 0.42 2.68 16 19 N -0.89 -48.97 11.24 21.45 0.24 -48.73 16 20 Si 0.93 42.19 29.60 68.60 2.03 44.22 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 C -0.22 -10.39 9.88 30.59 0.30 -10.09 16 25 C -0.16 -7.06 9.92 30.60 0.30 -6.75 16 26 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.09 1.82 7.42 -2.39 -0.02 1.80 16 28 H 0.07 1.95 8.02 -2.39 -0.02 1.93 16 29 H 0.13 3.03 5.88 -2.91 -0.02 3.01 16 30 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 33 H 0.09 2.07 8.09 -2.39 -0.02 2.05 16 34 H 0.07 1.97 6.73 -2.39 -0.02 1.95 16 35 H 0.03 1.26 7.52 -2.38 -0.02 1.24 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 38 H 0.34 14.33 8.17 -89.69 -0.73 13.60 16 39 H 0.02 0.89 7.74 -2.39 -0.02 0.87 16 40 H 0.05 2.68 4.89 -2.39 -0.01 2.66 16 41 H 0.26 13.79 8.32 -92.71 -0.77 13.02 16 42 H 0.06 2.92 8.08 -2.39 -0.02 2.91 16 43 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 44 H 0.07 2.87 8.14 -2.39 -0.02 2.86 16 45 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -58.02 370.84 3.97 -54.05 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: 0.23 Total: 37.09 kcal Atomic # 6 Polarization: -59.37 SS G_CDS: 4.47 Total: -54.90 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -1.70 Total: -76.14 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -1.06 Total: -4.32 kcal Total: -58.02 3.97 -54.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430742468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.350 kcal (2) G-P(sol) polarization free energy of solvation -58.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds