Wall clock time and date at job start Tue Mar 31 2020 09:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76194 * 102.99897 * 2 1 4 4 C 1.38999 * 120.08431 * 0.02624 * 3 2 1 5 5 C 1.38061 * 119.92295 * 179.97438 * 4 3 2 6 6 C 1.38327 * 120.08019 * 359.97438 * 5 4 3 7 7 C 1.38286 * 120.15769 * 359.75244 * 6 5 4 8 8 C 1.38106 * 120.08227 * 0.50382 * 7 6 5 9 9 C 1.50696 * 120.03941 * 179.77359 * 8 7 6 10 10 C 1.53000 * 109.46885 * 260.15952 * 9 8 7 11 11 H 1.08997 * 109.47514 * 305.73570 * 10 9 8 12 12 C 1.53003 * 109.47380 * 185.73247 * 10 9 8 13 13 N 1.46905 * 109.47074 * 65.73361 * 10 9 8 14 14 C 1.46893 * 111.00161 * 207.62429 * 13 10 9 15 15 C 1.53002 * 109.47188 * 175.41954 * 14 13 10 16 16 C 1.50698 * 115.54934 * 39.55658 * 15 14 13 17 17 H 1.08006 * 119.99746 * 265.25854 * 16 15 14 18 18 C 1.37875 * 120.00227 * 85.26126 * 16 15 14 19 19 N 1.31511 * 120.00063 * 184.59555 * 18 16 15 20 20 Si 1.86798 * 120.00053 * 4.58996 * 18 16 15 21 21 H 1.48504 * 109.46686 * 94.28655 * 20 18 16 22 22 H 1.48494 * 109.47812 * 214.28957 * 20 18 16 23 23 H 1.48507 * 109.46916 * 334.29362 * 20 18 16 24 24 C 1.52998 * 117.50078 * 253.84785 * 15 14 13 25 25 C 1.52999 * 60.00096 * 252.51148 * 24 15 14 26 26 H 1.08998 * 109.47458 * 59.99949 * 1 2 3 27 27 H 1.09002 * 109.46976 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47376 * 299.99873 * 1 2 3 29 29 H 1.07998 * 120.03570 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.95786 * 179.97438 * 5 4 3 31 31 H 1.07995 * 119.92176 * 180.02562 * 6 5 4 32 32 H 1.08002 * 119.95766 * 180.25646 * 7 6 5 33 33 H 1.09005 * 109.47314 * 140.16322 * 9 8 7 34 34 H 1.09005 * 109.47375 * 20.15916 * 9 8 7 35 35 H 1.08994 * 109.47597 * 184.88436 * 12 10 9 36 36 H 1.09003 * 109.47239 * 304.89022 * 12 10 9 37 37 H 1.09002 * 109.46721 * 64.88259 * 12 10 9 38 38 H 1.00900 * 110.99996 * 331.58431 * 13 10 9 39 39 H 1.08994 * 109.47761 * 295.42436 * 14 13 10 40 40 H 1.08998 * 109.46828 * 55.42387 * 14 13 10 41 41 H 0.97004 * 120.00297 * 179.97438 * 19 18 16 42 42 H 1.09004 * 117.50135 * 359.97438 * 24 15 14 43 43 H 1.08996 * 117.50234 * 145.01774 * 24 15 14 44 44 H 1.09001 * 117.49719 * 252.50941 * 25 24 15 45 45 H 1.08998 * 117.52088 * 107.48087 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1951 2.6662 0.0006 5 6 1.5094 4.0106 0.0011 6 6 2.8328 4.4132 0.0016 7 6 3.8454 3.4714 0.0068 8 6 3.5386 2.1249 0.0009 9 6 4.6429 1.0995 0.0014 10 6 4.8540 0.5769 -1.4210 11 1 3.9073 0.2106 -1.8179 12 6 5.8733 -0.5640 -1.3991 13 7 5.3543 1.6641 -2.2730 14 6 4.9675 1.4551 -3.6746 15 6 5.4058 2.6599 -4.5097 16 6 6.7522 3.2387 -4.1588 17 1 6.8201 4.0722 -3.4752 18 6 7.8973 2.7045 -4.7104 19 7 9.0769 3.1492 -4.3359 20 14 7.7732 1.3489 -5.9895 21 1 7.8044 1.9465 -7.3486 22 1 8.9167 0.4145 -5.8333 23 1 6.4996 0.6080 -5.8037 24 6 4.3183 3.6306 -4.9742 25 6 4.9851 2.6906 -5.9804 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.1617 2.3526 0.0006 30 1 0.7211 4.7487 0.0011 31 1 3.0758 5.4654 0.0024 32 1 4.8776 3.7894 0.0113 33 1 4.3698 0.2717 0.6558 34 1 5.5643 1.5580 0.3606 35 1 6.0889 -0.8784 -2.4202 36 1 6.7919 -0.2215 -0.9227 37 1 5.4652 -1.4051 -0.8385 38 1 5.0346 2.5611 -1.9395 39 1 5.4504 0.5548 -4.0544 40 1 3.8854 1.3421 -3.7398 41 1 9.8826 2.7731 -4.7237 42 1 3.2905 3.4108 -4.6852 43 1 4.5764 4.6883 -5.0259 44 1 5.6821 3.1299 -6.6941 45 1 4.3965 1.8523 -6.3531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430742469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:53 Heat of formation + Delta-G solvation = 46.218177 kcal Electronic energy + Delta-G solvation = -23420.115916 eV Core-core repulsion = 20336.179378 eV Total energy + Delta-G solvation = -3083.936538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.43854 -37.45251 -35.84153 -32.11022 -31.86834 -31.32052 -29.83341 -28.99215 -26.36711 -25.68568 -24.12289 -22.86377 -21.62040 -21.52215 -19.88749 -18.80028 -17.54507 -16.28547 -16.04375 -15.60877 -15.19507 -14.72211 -14.56943 -14.25508 -14.13447 -13.98355 -13.66291 -13.42355 -13.01820 -12.67195 -12.61232 -12.44920 -12.22118 -12.02304 -11.86536 -11.67234 -11.26720 -11.21942 -10.96934 -10.82134 -10.67729 -10.39027 -10.24613 -10.15163 -9.93128 -9.73136 -9.34090 -8.97536 -8.74993 -8.38681 -8.28282 -7.50533 -7.33263 -5.90713 -3.88540 1.21994 1.35671 1.44171 2.32537 3.41233 3.50573 3.56271 3.69715 4.60663 4.74189 4.77519 4.81849 4.82218 4.83038 5.03292 5.10893 5.33663 5.35025 5.39803 5.42154 5.48558 5.60148 5.70028 5.81877 5.93656 6.00524 6.06962 6.09301 6.17526 6.21173 6.26936 6.32420 6.35827 6.47070 6.51387 6.53793 6.61436 6.71135 6.76960 6.82900 6.93361 7.14468 7.23285 7.87219 8.06711 8.34125 8.69396 9.11069 9.74681 11.22126 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.004655 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.474249 B = 6013.808786 C = 6379.925714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.106 6.106 3 C -0.087 4.087 4 C -0.135 4.135 5 C -0.109 4.109 6 C -0.117 4.117 7 C -0.094 4.094 8 C -0.059 4.059 9 C -0.087 4.087 10 C 0.086 3.914 11 H 0.043 0.957 12 C -0.136 4.136 13 N -0.652 5.652 14 C 0.102 3.898 15 C 0.005 3.995 16 C -0.455 4.455 17 H 0.074 0.926 18 C 0.081 3.919 19 N -0.903 5.903 20 Si 0.877 3.123 21 H -0.286 1.286 22 H -0.297 1.297 23 H -0.258 1.258 24 C -0.187 4.187 25 C -0.201 4.201 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.340 0.660 39 H 0.060 0.940 40 H 0.001 0.999 41 H 0.260 0.740 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.926 -4.234 10.442 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.136 5.864 3 C -0.199 4.199 4 C -0.159 4.159 5 C -0.129 4.129 6 C -0.137 4.137 7 C -0.114 4.114 8 C -0.065 4.065 9 C -0.125 4.125 10 C -0.025 4.025 11 H 0.061 0.939 12 C -0.194 4.194 13 N -0.285 5.285 14 C -0.028 4.028 15 C 0.004 3.996 16 C -0.493 4.493 17 H 0.092 0.908 18 C -0.120 4.120 19 N -0.542 5.542 20 Si 0.706 3.294 21 H -0.213 1.213 22 H -0.225 1.225 23 H -0.182 1.182 24 C -0.224 4.224 25 C -0.239 4.239 26 H 0.100 0.900 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.159 0.841 39 H 0.079 0.921 40 H 0.019 0.981 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.483 -5.620 10.349 19.453 hybrid contribution -1.860 0.665 -0.867 2.157 sum -17.343 -4.955 9.482 20.377 Atomic orbital electron populations 1.23705 0.96269 1.06775 1.05362 1.85577 1.04883 1.03500 1.92441 1.21587 0.96126 0.96273 1.05920 1.21063 0.97766 0.93335 1.03722 1.20985 0.96696 0.95074 1.00169 1.21210 0.92640 0.99827 1.00038 1.21209 1.00202 0.91729 0.98270 1.19642 0.92281 0.94977 0.99553 1.20905 0.96543 0.96907 0.98173 1.21497 0.96238 0.93375 0.91357 0.93891 1.21754 0.99395 0.96415 1.01832 1.60381 1.63076 1.03786 1.01241 1.21648 0.93898 0.98661 0.88576 1.19540 0.95546 0.93826 0.90710 1.19990 0.86247 1.16206 1.26808 0.90762 1.24824 0.95069 0.95771 0.96348 1.69900 0.97401 1.43446 1.43407 0.86910 0.77670 0.82904 0.81904 1.21298 1.22461 1.18235 1.22873 0.96225 0.97038 1.06300 1.22930 1.04254 1.01651 0.95094 0.89958 0.87659 0.90052 0.86317 0.86083 0.85680 0.84684 0.90324 0.89560 0.92624 0.91984 0.93538 0.84053 0.92130 0.98148 0.93027 0.91568 0.89754 0.89627 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.15 101.05 0.92 -0.31 16 2 S -0.11 -1.26 20.03 -107.50 -2.15 -3.41 16 3 C -0.09 -1.15 6.11 -39.03 -0.24 -1.39 16 4 C -0.14 -1.60 9.36 -39.36 -0.37 -1.97 16 5 C -0.11 -1.25 10.04 -39.61 -0.40 -1.65 16 6 C -0.12 -1.44 10.04 -39.53 -0.40 -1.83 16 7 C -0.09 -1.30 8.31 -39.61 -0.33 -1.63 16 8 C -0.06 -0.84 4.64 -104.41 -0.48 -1.32 16 9 C -0.09 -1.26 4.35 -27.88 -0.12 -1.38 16 10 C 0.09 1.43 2.56 -67.71 -0.17 1.25 16 11 H 0.04 0.73 6.76 -51.93 -0.35 0.38 16 12 C -0.14 -2.20 9.46 37.16 0.35 -1.84 16 13 N -0.65 -13.13 5.67 -106.73 -0.60 -13.73 16 14 C 0.10 2.19 5.44 -3.83 -0.02 2.17 16 15 C 0.00 0.12 1.08 -155.66 -0.17 -0.05 16 16 C -0.45 -12.57 8.75 -34.44 -0.30 -12.87 16 17 H 0.07 2.25 8.06 -52.48 -0.42 1.82 16 18 C 0.08 2.33 5.47 -17.82 -0.10 2.24 16 19 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 20 Si 0.88 22.35 25.16 -169.99 -4.28 18.07 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 23 H -0.26 -6.25 5.26 56.52 0.30 -5.95 16 24 C -0.19 -3.91 9.88 -26.73 -0.26 -4.18 16 25 C -0.20 -4.42 7.33 -26.73 -0.20 -4.62 16 26 H 0.08 0.65 7.75 -51.92 -0.40 0.25 16 27 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.08 0.58 7.75 -51.93 -0.40 0.17 16 29 H 0.12 1.15 5.88 -52.49 -0.31 0.84 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.14 1.84 8.01 -52.49 -0.42 1.42 16 33 H 0.08 1.05 7.23 -51.93 -0.38 0.67 16 34 H 0.09 1.25 8.01 -51.93 -0.42 0.84 16 35 H 0.05 0.97 7.62 -51.93 -0.40 0.58 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.34 6.75 6.25 -39.29 -0.25 6.51 16 39 H 0.06 1.38 6.18 -51.93 -0.32 1.06 16 40 H 0.00 0.01 7.74 -51.93 -0.40 -0.39 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 42 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 43 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 44 H 0.09 1.96 7.09 -51.93 -0.37 1.59 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -30.79 363.82 -10.51 -41.30 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -7.45 Total: 8.69 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: -2.28 Total: -29.40 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.17 Total: -40.73 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.28 Total: 18.07 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -2.15 Total: -3.41 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.79 -10.51 -41.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430742469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.515 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds