Wall clock time and date at job start Tue Mar 31 2020 09:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76194 * 102.99897 * 2 1 4 4 C 1.38999 * 120.08431 * 0.02624 * 3 2 1 5 5 C 1.38061 * 119.92295 * 179.97438 * 4 3 2 6 6 C 1.38327 * 120.08019 * 359.97438 * 5 4 3 7 7 C 1.38286 * 120.15769 * 359.75244 * 6 5 4 8 8 C 1.38106 * 120.08227 * 0.50382 * 7 6 5 9 9 C 1.50696 * 120.03941 * 179.77359 * 8 7 6 10 10 C 1.53000 * 109.46885 * 260.15952 * 9 8 7 11 11 H 1.08997 * 109.47514 * 305.73570 * 10 9 8 12 12 C 1.53003 * 109.47380 * 185.73247 * 10 9 8 13 13 N 1.46905 * 109.47074 * 65.73361 * 10 9 8 14 14 C 1.46893 * 111.00161 * 207.62429 * 13 10 9 15 15 C 1.53002 * 109.47188 * 175.41954 * 14 13 10 16 16 C 1.50698 * 115.54934 * 39.55658 * 15 14 13 17 17 H 1.08006 * 119.99746 * 265.25854 * 16 15 14 18 18 C 1.37875 * 120.00227 * 85.26126 * 16 15 14 19 19 N 1.31511 * 120.00063 * 184.59555 * 18 16 15 20 20 Si 1.86798 * 120.00053 * 4.58996 * 18 16 15 21 21 H 1.48504 * 109.46686 * 94.28655 * 20 18 16 22 22 H 1.48494 * 109.47812 * 214.28957 * 20 18 16 23 23 H 1.48507 * 109.46916 * 334.29362 * 20 18 16 24 24 C 1.52998 * 117.50078 * 253.84785 * 15 14 13 25 25 C 1.52999 * 60.00096 * 252.51148 * 24 15 14 26 26 H 1.08998 * 109.47458 * 59.99949 * 1 2 3 27 27 H 1.09002 * 109.46976 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47376 * 299.99873 * 1 2 3 29 29 H 1.07998 * 120.03570 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.95786 * 179.97438 * 5 4 3 31 31 H 1.07995 * 119.92176 * 180.02562 * 6 5 4 32 32 H 1.08002 * 119.95766 * 180.25646 * 7 6 5 33 33 H 1.09005 * 109.47314 * 140.16322 * 9 8 7 34 34 H 1.09005 * 109.47375 * 20.15916 * 9 8 7 35 35 H 1.08994 * 109.47597 * 184.88436 * 12 10 9 36 36 H 1.09003 * 109.47239 * 304.89022 * 12 10 9 37 37 H 1.09002 * 109.46721 * 64.88259 * 12 10 9 38 38 H 1.00900 * 110.99996 * 331.58431 * 13 10 9 39 39 H 1.08994 * 109.47761 * 295.42436 * 14 13 10 40 40 H 1.08998 * 109.46828 * 55.42387 * 14 13 10 41 41 H 0.97004 * 120.00297 * 179.97438 * 19 18 16 42 42 H 1.09004 * 117.50135 * 359.97438 * 24 15 14 43 43 H 1.08996 * 117.50234 * 145.01774 * 24 15 14 44 44 H 1.09001 * 117.49719 * 252.50941 * 25 24 15 45 45 H 1.08998 * 117.52088 * 107.48087 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1951 2.6662 0.0006 5 6 1.5094 4.0106 0.0011 6 6 2.8328 4.4132 0.0016 7 6 3.8454 3.4714 0.0068 8 6 3.5386 2.1249 0.0009 9 6 4.6429 1.0995 0.0014 10 6 4.8540 0.5769 -1.4210 11 1 3.9073 0.2106 -1.8179 12 6 5.8733 -0.5640 -1.3991 13 7 5.3543 1.6641 -2.2730 14 6 4.9675 1.4551 -3.6746 15 6 5.4058 2.6599 -4.5097 16 6 6.7522 3.2387 -4.1588 17 1 6.8201 4.0722 -3.4752 18 6 7.8973 2.7045 -4.7104 19 7 9.0769 3.1492 -4.3359 20 14 7.7732 1.3489 -5.9895 21 1 7.8044 1.9465 -7.3486 22 1 8.9167 0.4145 -5.8333 23 1 6.4996 0.6080 -5.8037 24 6 4.3183 3.6306 -4.9742 25 6 4.9851 2.6906 -5.9804 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.1617 2.3526 0.0006 30 1 0.7211 4.7487 0.0011 31 1 3.0758 5.4654 0.0024 32 1 4.8776 3.7894 0.0113 33 1 4.3698 0.2717 0.6558 34 1 5.5643 1.5580 0.3606 35 1 6.0889 -0.8784 -2.4202 36 1 6.7919 -0.2215 -0.9227 37 1 5.4652 -1.4051 -0.8385 38 1 5.0346 2.5611 -1.9395 39 1 5.4504 0.5548 -4.0544 40 1 3.8854 1.3421 -3.7398 41 1 9.8826 2.7731 -4.7237 42 1 3.2905 3.4108 -4.6852 43 1 4.5764 4.6883 -5.0259 44 1 5.6821 3.1299 -6.6941 45 1 4.3965 1.8523 -6.3531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430742469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:52 Heat of formation + Delta-G solvation = 29.461285 kcal Electronic energy + Delta-G solvation = -23420.842549 eV Core-core repulsion = 20336.179378 eV Total energy + Delta-G solvation = -3084.663171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.46849 -39.08569 -37.26799 -34.08232 -33.30504 -32.23147 -31.15904 -29.65067 -27.80764 -27.45127 -25.81097 -23.81643 -23.31640 -22.59098 -21.24518 -20.67575 -18.45618 -18.19880 -17.08886 -17.02238 -16.66767 -16.17859 -15.82064 -15.53117 -15.17320 -14.96178 -14.88900 -14.68468 -14.61910 -14.33804 -13.79587 -13.76950 -13.39176 -13.33704 -13.01381 -12.98263 -12.82867 -12.59458 -12.54191 -12.24898 -12.11519 -11.92092 -11.84461 -11.68245 -11.30877 -11.00378 -10.93084 -10.65457 -10.46569 -10.17500 -9.73392 -8.96413 -8.31204 -8.14270 -6.14493 0.26740 0.39752 0.62273 1.37727 1.42019 1.53812 1.54222 2.47562 2.73608 3.13093 3.24565 3.49808 3.76245 3.89264 4.05765 4.14960 4.22764 4.26451 4.28623 4.37524 4.40511 4.42308 4.49638 4.53192 4.58574 4.66574 4.73216 4.83688 4.84988 4.85840 4.87460 4.96607 5.03111 5.07692 5.11300 5.21138 5.31364 5.34407 5.46367 5.52123 5.55582 5.63050 5.82707 5.99345 6.39110 6.54599 6.78624 6.89115 7.51507 9.02231 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.004655 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.474249 B = 6013.808786 C = 6379.925714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.140 6.140 3 C -0.095 4.095 4 C -0.138 4.138 5 C -0.107 4.107 6 C -0.126 4.126 7 C -0.113 4.113 8 C -0.078 4.078 9 C -0.077 4.077 10 C 0.091 3.909 11 H 0.045 0.955 12 C -0.134 4.134 13 N -0.673 5.673 14 C 0.113 3.887 15 C -0.023 4.023 16 C -0.441 4.441 17 H 0.031 0.969 18 C 0.025 3.975 19 N -0.953 5.953 20 Si 0.932 3.068 21 H -0.280 1.280 22 H -0.305 1.305 23 H -0.235 1.235 24 C -0.166 4.166 25 C -0.197 4.197 26 H 0.088 0.912 27 H 0.123 0.877 28 H 0.094 0.906 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.139 0.861 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.338 0.662 39 H 0.047 0.953 40 H 0.017 0.983 41 H 0.259 0.741 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.525 -5.312 10.157 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.102 5.898 3 C -0.207 4.207 4 C -0.161 4.161 5 C -0.127 4.127 6 C -0.146 4.146 7 C -0.133 4.133 8 C -0.083 4.083 9 C -0.115 4.115 10 C -0.019 4.019 11 H 0.063 0.937 12 C -0.192 4.192 13 N -0.306 5.306 14 C -0.017 4.017 15 C -0.024 4.024 16 C -0.479 4.479 17 H 0.050 0.950 18 C -0.171 4.171 19 N -0.595 5.595 20 Si 0.758 3.242 21 H -0.206 1.206 22 H -0.233 1.233 23 H -0.158 1.158 24 C -0.204 4.204 25 C -0.234 4.234 26 H 0.107 0.893 27 H 0.141 0.859 28 H 0.113 0.887 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.157 0.843 32 H 0.140 0.860 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.158 0.842 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.067 0.933 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.113 -6.701 10.065 22.616 hybrid contribution -0.825 1.080 -0.682 1.521 sum -19.937 -5.621 9.383 22.741 Atomic orbital electron populations 1.23797 0.92634 1.08288 1.06293 1.85633 1.08905 1.02887 1.92370 1.21746 0.95960 0.97314 1.05695 1.21422 0.98687 0.93264 1.02772 1.21349 0.96875 0.95739 0.98688 1.21448 0.92960 1.00312 0.99878 1.21242 1.00182 0.92349 0.99498 1.19630 0.92812 0.94812 1.01078 1.20757 0.96487 0.97425 0.96864 1.21496 0.96070 0.92369 0.91995 0.93671 1.21753 0.99051 0.97289 1.01118 1.60346 1.64064 1.04820 1.01321 1.21445 0.94549 0.96834 0.88873 1.19481 0.94451 0.95835 0.92626 1.20080 0.88599 1.14459 1.24764 0.95037 1.25564 0.94691 0.98267 0.98568 1.70046 0.98246 1.45640 1.45544 0.86021 0.78255 0.80309 0.79566 1.20590 1.23291 1.15798 1.22873 0.96754 0.96294 1.04434 1.22967 1.04143 1.02639 0.93701 0.89331 0.85877 0.88726 0.83846 0.83195 0.84296 0.86021 0.89208 0.90718 0.94205 0.93177 0.90732 0.84201 0.93431 0.96491 0.93255 0.88768 0.90333 0.90825 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.15 113.37 1.04 -0.76 16 2 S -0.14 -3.01 20.03 -56.49 -1.13 -4.14 16 3 C -0.09 -2.35 6.11 22.62 0.14 -2.21 16 4 C -0.14 -2.88 9.36 22.41 0.21 -2.67 16 5 C -0.11 -2.16 10.04 22.25 0.22 -1.94 16 6 C -0.13 -2.95 10.04 22.30 0.22 -2.73 16 7 C -0.11 -3.15 8.31 22.25 0.18 -2.97 16 8 C -0.08 -2.17 4.64 -19.72 -0.09 -2.27 16 9 C -0.08 -2.24 4.35 29.85 0.13 -2.11 16 10 C 0.09 2.98 2.56 44.92 0.11 3.09 16 11 H 0.05 1.49 6.76 -2.39 -0.02 1.47 16 12 C -0.13 -4.29 9.46 71.98 0.68 -3.61 16 13 N -0.67 -27.20 5.67 -491.58 -2.78 -29.98 16 14 C 0.11 4.70 5.44 86.31 0.47 5.17 16 15 C -0.02 -1.05 1.08 -52.93 -0.06 -1.10 16 16 C -0.44 -24.94 8.75 25.60 0.22 -24.71 16 17 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 18 C 0.03 1.48 5.47 84.65 0.46 1.94 16 19 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 20 Si 0.93 46.24 25.16 68.60 1.73 47.96 16 21 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 23 H -0.23 -10.68 5.26 99.48 0.52 -10.16 16 24 C -0.17 -6.57 9.88 30.59 0.30 -6.27 16 25 C -0.20 -8.12 7.33 30.59 0.22 -7.90 16 26 H 0.09 1.05 7.75 -2.39 -0.02 1.03 16 27 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 0.97 7.75 -2.39 -0.02 0.96 16 29 H 0.14 2.19 5.88 -2.91 -0.02 2.18 16 30 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.12 3.57 8.01 -2.91 -0.02 3.55 16 33 H 0.09 2.35 7.23 -2.38 -0.02 2.33 16 34 H 0.07 2.27 8.01 -2.38 -0.02 2.25 16 35 H 0.04 1.37 7.62 -2.39 -0.02 1.36 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.34 13.70 6.25 -89.69 -0.56 13.14 16 39 H 0.05 2.09 6.18 -2.39 -0.01 2.08 16 40 H 0.02 0.66 7.74 -2.39 -0.02 0.64 16 41 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 42 H 0.09 3.22 8.08 -2.38 -0.02 3.20 16 43 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 44 H 0.07 3.22 7.09 -2.39 -0.02 3.20 16 45 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -67.86 363.82 2.81 -65.05 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.22 Total: 32.69 kcal Atomic # 6 Polarization: -55.51 SS G_CDS: 4.48 Total: -51.03 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -2.49 Total: -90.53 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.73 Total: 47.96 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -1.13 Total: -4.14 kcal Total: -67.86 2.81 -65.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430742469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.510 kcal (2) G-P(sol) polarization free energy of solvation -67.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds