Wall clock time and date at job start Tue Mar 31 2020 09:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47000 * 2 1 4 4 C 1.53005 * 109.46744 * 239.99918 * 2 1 3 5 5 C 1.50699 * 109.46845 * 65.00258 * 4 2 1 6 6 O 1.21284 * 120.00377 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99908 * 179.97438 * 5 4 2 8 8 C 1.46508 * 120.00075 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47043 * 178.28540 * 8 7 5 10 10 C 1.50706 * 115.54888 * 65.14061 * 9 8 7 11 11 H 1.07998 * 119.99717 * 265.40199 * 10 9 8 12 12 C 1.37877 * 119.99841 * 85.40458 * 10 9 8 13 13 N 1.31518 * 119.99971 * 353.55451 * 12 10 9 14 14 Si 1.86796 * 119.99696 * 173.54829 * 12 10 9 15 15 H 1.48501 * 109.47043 * 90.00606 * 14 12 10 16 16 H 1.48507 * 109.47254 * 209.99880 * 14 12 10 17 17 H 1.48494 * 109.47727 * 330.00545 * 14 12 10 18 18 C 1.52996 * 117.49751 * 279.47333 * 9 8 7 19 19 C 1.52992 * 117.49742 * 210.81136 * 9 8 7 20 20 C 1.50701 * 109.46767 * 120.00251 * 2 1 3 21 21 C 1.38219 * 120.01388 * 59.99929 * 20 2 1 22 22 C 1.38225 * 120.02402 * 179.97438 * 21 20 2 23 23 C 1.38261 * 120.05157 * 0.02562 * 22 21 20 24 24 C 1.38184 * 120.02771 * 359.97438 * 23 22 21 25 25 C 1.38437 * 120.00937 * 239.71850 * 20 2 1 26 26 F 1.35095 * 120.02756 * 0.02562 * 25 20 2 27 27 H 1.08991 * 109.47674 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46916 * 299.99688 * 1 2 3 29 29 H 1.08999 * 109.47167 * 59.99708 * 1 2 3 30 30 H 1.08998 * 109.46908 * 184.99792 * 4 2 1 31 31 H 1.08999 * 109.47234 * 305.00164 * 4 2 1 32 32 H 0.97002 * 119.99856 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.46773 * 298.28235 * 8 7 5 34 34 H 1.08994 * 109.46935 * 58.28628 * 8 7 5 35 35 H 0.96996 * 119.99619 * 185.06830 * 13 12 10 36 36 H 1.09002 * 117.50252 * 359.97438 * 18 9 8 37 37 H 1.09003 * 117.49845 * 145.02149 * 18 9 8 38 38 H 1.09008 * 117.49991 * 214.97888 * 19 9 8 39 39 H 1.09000 * 117.50318 * 359.97438 * 19 9 8 40 40 H 1.08002 * 119.98928 * 359.97438 * 21 20 2 41 41 H 1.07997 * 119.96926 * 179.97438 * 22 21 20 42 42 H 1.07996 * 119.98931 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.01243 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0109 1.0870 -2.3633 7 7 1.9852 -0.3913 -3.7001 8 6 1.5981 0.3656 -4.8932 9 6 2.1450 -0.3326 -6.1399 10 6 1.5726 -1.6974 -6.4244 11 1 2.0843 -2.5814 -6.0736 12 6 0.3956 -1.8174 -7.1325 13 7 -0.2933 -0.7429 -7.4499 14 14 -0.2203 -3.5059 -7.6411 15 1 -1.0958 -4.0553 -6.5749 16 1 -0.9918 -3.3915 -8.9049 17 1 0.9368 -4.4134 -7.8479 18 6 3.6138 -0.0944 -6.4959 19 6 2.5080 0.5452 -7.3393 20 6 2.0323 -0.7105 1.2305 21 6 1.6985 -2.0338 1.4494 22 6 2.1595 -2.6858 2.5777 23 6 2.9544 -2.0152 3.4887 24 6 3.2894 -0.6922 3.2719 25 6 2.8330 -0.0397 2.1390 26 9 3.1641 1.2522 1.9234 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.1263 -0.7995 -1.2057 31 1 1.6053 -1.7198 -1.2952 32 1 2.4890 -1.2153 -3.7908 33 1 0.5110 0.4178 -4.9535 34 1 2.0075 1.3739 -4.8325 35 1 -1.1568 -0.8309 -7.8829 36 1 4.1904 0.5600 -5.8422 37 1 4.1660 -0.9247 -6.9362 38 1 2.3332 0.1355 -8.3342 39 1 2.3568 1.6201 -7.2404 40 1 1.0772 -2.5585 0.7387 41 1 1.8978 -3.7196 2.7481 42 1 3.3137 -2.5254 4.3701 43 1 3.9101 -0.1685 3.9839 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431159096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:02 Heat of formation + Delta-G solvation = -51.478547 kcal Electronic energy + Delta-G solvation = -24463.778366 eV Core-core repulsion = 20809.392204 eV Total energy + Delta-G solvation = -3654.386162 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.99334 -39.79003 -38.86085 -36.78825 -35.04602 -33.26381 -31.99356 -30.74495 -30.01411 -28.14151 -25.98242 -25.03622 -23.85967 -22.71103 -21.23956 -20.57369 -19.61990 -19.10330 -17.86796 -16.91566 -16.36377 -16.22722 -15.72429 -15.57999 -15.13610 -14.84312 -14.66288 -14.35018 -14.11061 -13.72173 -13.44910 -13.20898 -13.10858 -12.80160 -12.50348 -12.35620 -12.06277 -11.93775 -11.62583 -11.45510 -11.13264 -11.02285 -10.96961 -10.83759 -10.70466 -10.54383 -10.28269 -9.66498 -9.25599 -9.11938 -8.97585 -8.80830 -8.51809 -8.28337 -8.06881 -6.10046 -4.18915 0.96729 1.00053 3.22475 3.23401 3.31694 3.33381 3.37583 3.85515 4.11152 4.33009 4.49766 4.57129 4.73974 4.96127 5.04266 5.12215 5.17564 5.17916 5.25558 5.37759 5.60698 5.69803 5.73871 5.76576 5.85451 5.94726 6.02059 6.03766 6.11633 6.18515 6.32556 6.40251 6.45854 6.52721 6.56975 6.68126 6.70941 6.88923 7.08040 7.29707 7.42185 7.47313 7.78968 8.30874 8.32287 8.81599 8.90752 9.47971 10.97743 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.003163 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.861327 B = 8849.338386 C = 9494.703816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 H 0.091 0.909 4 C -0.133 4.133 5 C 0.504 3.496 6 O -0.554 6.554 7 N -0.704 5.704 8 C 0.163 3.837 9 C 0.028 3.972 10 C -0.501 4.501 11 H 0.060 0.940 12 C 0.074 3.926 13 N -0.874 5.874 14 Si 0.890 3.110 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.211 4.211 19 C -0.148 4.148 20 C -0.104 4.104 21 C -0.087 4.087 22 C -0.129 4.129 23 C -0.100 4.100 24 C -0.155 4.155 25 C 0.099 3.901 26 F -0.137 7.137 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.400 0.600 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 -3.327 18.993 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.056 4.056 3 H 0.109 0.891 4 C -0.173 4.173 5 C 0.290 3.710 6 O -0.434 6.434 7 N -0.352 5.352 8 C 0.040 3.960 9 C 0.027 3.973 10 C -0.539 4.539 11 H 0.078 0.922 12 C -0.130 4.130 13 N -0.510 5.510 14 Si 0.717 3.283 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.248 4.248 19 C -0.187 4.187 20 C -0.105 4.105 21 C -0.105 4.105 22 C -0.147 4.147 23 C -0.118 4.118 24 C -0.174 4.174 25 C 0.080 3.920 26 F -0.115 7.115 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.233 0.767 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.093 -2.462 18.863 19.693 hybrid contribution -0.073 -1.088 -0.417 1.168 sum 5.020 -3.550 18.446 19.443 Atomic orbital electron populations 1.21953 0.93194 1.01794 1.03471 1.19823 0.97164 0.99526 0.89087 0.89116 1.21721 1.02649 1.00274 0.92640 1.20418 0.79965 0.85889 0.84774 1.90626 1.40844 1.25125 1.86781 1.46003 1.56000 1.27484 1.05704 1.20979 1.00400 0.91732 0.82861 1.19034 0.90722 0.95994 0.91524 1.20338 1.08147 0.89925 1.35471 0.92212 1.24989 0.96723 0.96398 0.94919 1.69978 1.12514 1.27889 1.40598 0.86635 0.78900 0.84502 0.78241 1.20658 1.21156 1.19810 1.23024 0.93265 1.02939 1.05596 1.22491 1.02347 0.96522 0.97293 1.20074 0.98325 0.95115 0.96989 1.20988 0.98841 0.93133 0.97491 1.21214 0.98507 1.00400 0.94598 1.20981 0.97769 0.93553 0.99474 1.21132 1.02917 0.96028 0.97278 1.17613 0.99032 0.79266 0.96077 1.91496 1.90827 1.34475 1.94735 0.93048 0.93081 0.89553 0.89271 0.88894 0.76652 0.91000 0.94562 0.92832 0.91667 0.90366 0.89837 0.91687 0.84858 0.85397 0.85273 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.75 37.16 0.33 -1.65 16 2 C -0.04 -0.49 2.19 -91.77 -0.20 -0.69 16 3 H 0.09 1.38 6.94 -51.93 -0.36 1.02 16 4 C -0.13 -1.76 4.91 -27.88 -0.14 -1.90 16 5 C 0.50 9.04 7.55 -10.99 -0.08 8.96 16 6 O -0.55 -11.78 13.96 5.55 0.08 -11.70 16 7 N -0.70 -13.32 5.48 -60.29 -0.33 -13.65 16 8 C 0.16 3.67 5.50 -4.04 -0.02 3.65 16 9 C 0.03 0.65 1.38 -155.66 -0.21 0.44 16 10 C -0.50 -12.71 8.63 -34.44 -0.30 -13.01 16 11 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 12 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 13 N -0.87 -24.06 12.91 55.43 0.72 -23.34 16 14 Si 0.89 20.27 29.55 -169.99 -5.02 15.25 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 C -0.21 -4.36 9.96 -26.70 -0.27 -4.62 16 19 C -0.15 -3.38 9.42 -26.70 -0.25 -3.63 16 20 C -0.10 -1.20 4.79 -104.55 -0.50 -1.70 16 21 C -0.09 -0.83 8.76 -39.59 -0.35 -1.18 16 22 C -0.13 -1.04 10.04 -39.58 -0.40 -1.44 16 23 C -0.10 -0.78 10.04 -39.59 -0.40 -1.18 16 24 C -0.15 -1.44 10.03 -39.51 -0.40 -1.84 16 25 C 0.10 1.16 7.25 -39.42 -0.29 0.88 16 26 F -0.14 -1.81 16.19 2.25 0.04 -1.77 16 27 H 0.05 0.61 7.39 -51.93 -0.38 0.22 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.41 5.95 -51.93 -0.31 1.10 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.07 7.57 -51.93 -0.39 0.68 16 32 H 0.40 6.88 8.37 -40.82 -0.34 6.53 16 33 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.08 2.02 8.14 -51.92 -0.42 1.60 16 39 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.13 1.13 7.17 -52.49 -0.38 0.75 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -29.36 362.78 -8.98 -38.34 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.36 Total: 8.50 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -3.57 Total: -17.09 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.39 Total: -37.00 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.36 -8.98 -38.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431159096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.136 kcal (2) G-P(sol) polarization free energy of solvation -29.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds