Wall clock time and date at job start Tue Mar 31 2020 09:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47000 * 2 1 4 4 C 1.53005 * 109.46744 * 239.99918 * 2 1 3 5 5 C 1.50699 * 109.46845 * 65.00258 * 4 2 1 6 6 O 1.21284 * 120.00377 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99908 * 179.97438 * 5 4 2 8 8 C 1.46508 * 120.00075 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47043 * 178.28540 * 8 7 5 10 10 C 1.50706 * 115.54888 * 65.14061 * 9 8 7 11 11 H 1.07998 * 119.99717 * 265.40199 * 10 9 8 12 12 C 1.37877 * 119.99841 * 85.40458 * 10 9 8 13 13 N 1.31518 * 119.99971 * 353.55451 * 12 10 9 14 14 Si 1.86796 * 119.99696 * 173.54829 * 12 10 9 15 15 H 1.48501 * 109.47043 * 90.00606 * 14 12 10 16 16 H 1.48507 * 109.47254 * 209.99880 * 14 12 10 17 17 H 1.48494 * 109.47727 * 330.00545 * 14 12 10 18 18 C 1.52996 * 117.49751 * 279.47333 * 9 8 7 19 19 C 1.52992 * 117.49742 * 210.81136 * 9 8 7 20 20 C 1.50701 * 109.46767 * 120.00251 * 2 1 3 21 21 C 1.38219 * 120.01388 * 59.99929 * 20 2 1 22 22 C 1.38225 * 120.02402 * 179.97438 * 21 20 2 23 23 C 1.38261 * 120.05157 * 0.02562 * 22 21 20 24 24 C 1.38184 * 120.02771 * 359.97438 * 23 22 21 25 25 C 1.38437 * 120.00937 * 239.71850 * 20 2 1 26 26 F 1.35095 * 120.02756 * 0.02562 * 25 20 2 27 27 H 1.08991 * 109.47674 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46916 * 299.99688 * 1 2 3 29 29 H 1.08999 * 109.47167 * 59.99708 * 1 2 3 30 30 H 1.08998 * 109.46908 * 184.99792 * 4 2 1 31 31 H 1.08999 * 109.47234 * 305.00164 * 4 2 1 32 32 H 0.97002 * 119.99856 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.46773 * 298.28235 * 8 7 5 34 34 H 1.08994 * 109.46935 * 58.28628 * 8 7 5 35 35 H 0.96996 * 119.99619 * 185.06830 * 13 12 10 36 36 H 1.09002 * 117.50252 * 359.97438 * 18 9 8 37 37 H 1.09003 * 117.49845 * 145.02149 * 18 9 8 38 38 H 1.09008 * 117.49991 * 214.97888 * 19 9 8 39 39 H 1.09000 * 117.50318 * 359.97438 * 19 9 8 40 40 H 1.08002 * 119.98928 * 359.97438 * 21 20 2 41 41 H 1.07997 * 119.96926 * 179.97438 * 22 21 20 42 42 H 1.07996 * 119.98931 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.01243 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0109 1.0870 -2.3633 7 7 1.9852 -0.3913 -3.7001 8 6 1.5981 0.3656 -4.8932 9 6 2.1450 -0.3326 -6.1399 10 6 1.5726 -1.6974 -6.4244 11 1 2.0843 -2.5814 -6.0736 12 6 0.3956 -1.8174 -7.1325 13 7 -0.2933 -0.7429 -7.4499 14 14 -0.2203 -3.5059 -7.6411 15 1 -1.0958 -4.0553 -6.5749 16 1 -0.9918 -3.3915 -8.9049 17 1 0.9368 -4.4134 -7.8479 18 6 3.6138 -0.0944 -6.4959 19 6 2.5080 0.5452 -7.3393 20 6 2.0323 -0.7105 1.2305 21 6 1.6985 -2.0338 1.4494 22 6 2.1595 -2.6858 2.5777 23 6 2.9544 -2.0152 3.4887 24 6 3.2894 -0.6922 3.2719 25 6 2.8330 -0.0397 2.1390 26 9 3.1641 1.2522 1.9234 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.1263 -0.7995 -1.2057 31 1 1.6053 -1.7198 -1.2952 32 1 2.4890 -1.2153 -3.7908 33 1 0.5110 0.4178 -4.9535 34 1 2.0075 1.3739 -4.8325 35 1 -1.1568 -0.8309 -7.8829 36 1 4.1904 0.5600 -5.8422 37 1 4.1660 -0.9247 -6.9362 38 1 2.3332 0.1355 -8.3342 39 1 2.3568 1.6201 -7.2404 40 1 1.0772 -2.5585 0.7387 41 1 1.8978 -3.7196 2.7481 42 1 3.3137 -2.5254 4.3701 43 1 3.9101 -0.1685 3.9839 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431159096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:02 Heat of formation + Delta-G solvation = -66.739235 kcal Electronic energy + Delta-G solvation = -24464.440119 eV Core-core repulsion = 20809.392204 eV Total energy + Delta-G solvation = -3655.047915 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.88737 -40.98319 -39.92606 -38.51685 -36.09240 -34.90018 -33.96331 -31.43835 -30.90325 -29.39637 -27.77099 -26.73571 -24.74781 -23.47653 -22.98032 -21.69832 -21.31003 -20.57677 -18.75145 -18.28107 -17.76881 -17.33688 -16.76946 -16.64971 -16.46129 -16.39709 -16.33171 -15.60068 -15.14224 -14.91684 -14.79433 -14.44385 -14.25645 -14.03469 -13.73341 -13.62652 -13.47637 -13.09314 -12.93895 -12.85550 -12.80931 -12.52562 -12.33671 -12.17783 -12.05008 -11.82225 -11.65913 -11.48784 -10.86196 -10.75453 -10.45174 -10.05478 -9.84552 -9.78361 -9.56440 -8.09032 -6.22602 0.23980 0.31398 1.43136 1.46276 1.54579 1.78081 2.38495 2.44928 2.71083 3.19309 3.35548 3.46462 3.62367 3.72166 3.96416 4.07555 4.17239 4.23694 4.26954 4.42846 4.45157 4.48703 4.55423 4.65031 4.67070 4.72483 4.78472 4.92685 4.98616 5.03605 5.08619 5.13795 5.16693 5.26304 5.28239 5.39825 5.51251 5.54857 5.58886 5.60779 5.71814 5.79098 6.01497 6.37174 6.80529 6.86256 7.44232 7.47435 8.98570 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.003163 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.861327 B = 8849.338386 C = 9494.703816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.032 4.032 3 H 0.061 0.939 4 C -0.120 4.120 5 C 0.500 3.500 6 O -0.592 6.592 7 N -0.701 5.701 8 C 0.180 3.820 9 C 0.007 3.993 10 C -0.505 4.505 11 H 0.066 0.934 12 C 0.024 3.976 13 N -0.909 5.909 14 Si 0.951 3.049 15 H -0.277 1.277 16 H -0.292 1.292 17 H -0.263 1.263 18 C -0.177 4.177 19 C -0.162 4.162 20 C -0.117 4.117 21 C -0.091 4.091 22 C -0.123 4.123 23 C -0.093 4.093 24 C -0.157 4.157 25 C 0.069 3.931 26 F -0.156 7.156 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.411 0.589 33 H 0.028 0.972 34 H 0.031 0.969 35 H 0.258 0.742 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.146 0.854 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.076 -6.265 21.033 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.051 4.051 3 H 0.080 0.920 4 C -0.160 4.160 5 C 0.288 3.712 6 O -0.473 6.473 7 N -0.350 5.350 8 C 0.056 3.944 9 C 0.007 3.993 10 C -0.542 4.542 11 H 0.084 0.916 12 C -0.177 4.177 13 N -0.547 5.547 14 Si 0.777 3.223 15 H -0.203 1.203 16 H -0.218 1.218 17 H -0.187 1.187 18 C -0.214 4.214 19 C -0.200 4.200 20 C -0.118 4.118 21 C -0.109 4.109 22 C -0.141 4.141 23 C -0.111 4.111 24 C -0.176 4.176 25 C 0.050 3.950 26 F -0.135 7.135 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.128 0.872 31 H 0.137 0.863 32 H 0.246 0.754 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.164 0.836 41 H 0.175 0.825 42 H 0.179 0.821 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.518 -5.427 20.919 22.573 hybrid contribution -0.491 -0.166 -0.976 1.105 sum 6.027 -5.593 19.943 21.572 Atomic orbital electron populations 1.21877 0.93687 1.02520 1.01885 1.19656 0.96745 0.98386 0.90326 0.92003 1.21723 1.04027 1.00417 0.89794 1.21279 0.78744 0.85590 0.85572 1.90620 1.42347 1.27044 1.87325 1.45898 1.56296 1.27699 1.05098 1.20514 0.97569 0.92044 0.84320 1.19065 0.92983 0.95503 0.91773 1.20668 1.07952 0.90986 1.34613 0.91595 1.25727 0.97229 0.99477 0.95239 1.70115 1.12807 1.29864 1.41880 0.85664 0.78472 0.80730 0.77438 1.20324 1.21789 1.18700 1.23008 0.91864 1.02611 1.03901 1.22432 1.04474 0.96693 0.96416 1.19903 0.99504 0.96008 0.96342 1.21187 0.98975 0.92244 0.98519 1.21595 0.97305 1.01629 0.93535 1.21403 0.96638 0.92786 1.00232 1.21400 1.02757 0.96840 0.96594 1.17988 1.00541 0.78922 0.97559 1.91445 1.91179 1.35831 1.94996 0.91085 0.92719 0.93002 0.87193 0.86263 0.75372 0.95347 0.95115 0.93264 0.89485 0.89436 0.91791 0.91372 0.83628 0.82481 0.82093 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 8.75 71.98 0.63 -3.24 16 2 C -0.03 -0.85 2.19 -11.54 -0.03 -0.87 16 3 H 0.06 1.97 6.94 -2.39 -0.02 1.96 16 4 C -0.12 -3.03 4.91 29.85 0.15 -2.89 16 5 C 0.50 18.05 7.55 87.66 0.66 18.71 16 6 O -0.59 -26.21 13.96 -3.04 -0.04 -26.26 16 7 N -0.70 -26.38 5.48 -463.05 -2.54 -28.92 16 8 C 0.18 8.28 5.50 86.38 0.48 8.76 16 9 C 0.01 0.35 1.38 -52.93 -0.07 0.27 16 10 C -0.50 -25.36 8.63 25.60 0.22 -25.14 16 11 H 0.07 3.17 7.82 -2.91 -0.02 3.14 16 12 C 0.02 1.25 5.39 84.65 0.46 1.71 16 13 N -0.91 -51.31 12.91 21.45 0.28 -51.04 16 14 Si 0.95 41.51 29.55 68.60 2.03 43.54 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 18 C -0.18 -7.01 9.96 30.62 0.30 -6.70 16 19 C -0.16 -7.42 9.42 30.62 0.29 -7.13 16 20 C -0.12 -2.53 4.79 -19.82 -0.09 -2.62 16 21 C -0.09 -1.48 8.76 22.26 0.20 -1.28 16 22 C -0.12 -1.47 10.04 22.27 0.22 -1.25 16 23 C -0.09 -1.09 10.04 22.26 0.22 -0.87 16 24 C -0.16 -2.57 10.03 22.31 0.22 -2.35 16 25 C 0.07 1.56 7.25 22.38 0.16 1.72 16 26 F -0.16 -4.23 16.19 44.97 0.73 -3.51 16 27 H 0.07 1.59 7.39 -2.39 -0.02 1.58 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.77 5.95 -2.39 -0.01 1.76 16 30 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.12 2.42 7.57 -2.39 -0.02 2.40 16 32 H 0.41 13.54 8.37 -92.71 -0.78 12.77 16 33 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.03 1.42 8.09 -2.39 -0.02 1.40 16 35 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 36 H 0.09 3.08 8.14 -2.39 -0.02 3.07 16 37 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.06 3.15 8.14 -2.38 -0.02 3.13 16 39 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 40 H 0.15 1.93 7.17 -2.91 -0.02 1.91 16 41 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 42 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 43 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -66.04 362.78 4.71 -61.33 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.24 Total: 28.03 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 4.02 Total: -23.18 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -2.26 Total: -79.95 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.04 Total: -26.26 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.73 Total: -3.51 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -66.04 4.71 -61.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431159096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.414 kcal (2) G-P(sol) polarization free energy of solvation -66.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds