Wall clock time and date at job start Tue Mar 31 2020 09:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47549 * 2 1 4 4 C 1.52997 * 109.47400 * 120.00364 * 2 1 3 5 5 C 1.50702 * 109.47359 * 294.99882 * 4 2 1 6 6 O 1.21279 * 119.99362 * 353.70047 * 5 4 2 7 7 N 1.34770 * 120.00422 * 173.69839 * 5 4 2 8 8 C 1.46498 * 120.00036 * 184.17798 * 7 5 4 9 9 C 1.53009 * 109.47052 * 184.32703 * 8 7 5 10 10 C 1.50693 * 115.54892 * 294.97915 * 9 8 7 11 11 H 1.08005 * 120.00368 * 114.77852 * 10 9 8 12 12 C 1.37885 * 120.00401 * 294.50254 * 10 9 8 13 13 N 1.31506 * 120.00221 * 172.39419 * 12 10 9 14 14 Si 1.86796 * 119.99402 * 352.39278 * 12 10 9 15 15 H 1.48501 * 109.47222 * 94.04543 * 14 12 10 16 16 H 1.48496 * 109.47335 * 214.04302 * 14 12 10 17 17 H 1.48494 * 109.47553 * 334.04468 * 14 12 10 18 18 C 1.52994 * 117.49813 * 80.65003 * 9 8 7 19 19 C 1.52996 * 117.49811 * 149.30820 * 9 8 7 20 20 C 1.50708 * 109.46819 * 240.00280 * 2 1 3 21 21 C 1.38214 * 120.01137 * 299.72572 * 20 2 1 22 22 C 1.38228 * 120.02358 * 179.72321 * 21 20 2 23 23 C 1.38266 * 120.05118 * 0.55309 * 22 21 20 24 24 C 1.38176 * 120.02310 * 359.72074 * 23 22 21 25 25 C 1.38434 * 120.01303 * 120.00254 * 20 2 1 26 26 F 1.35107 * 120.02532 * 0.02562 * 25 20 2 27 27 H 1.09001 * 109.47549 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47087 * 299.99672 * 1 2 3 29 29 H 1.08995 * 109.47244 * 59.99698 * 1 2 3 30 30 H 1.08996 * 109.47689 * 174.99273 * 4 2 1 31 31 H 1.09001 * 109.47218 * 54.99692 * 4 2 1 32 32 H 0.97006 * 119.99860 * 4.16955 * 7 5 4 33 33 H 1.09001 * 109.47344 * 64.32745 * 8 7 5 34 34 H 1.08995 * 109.46975 * 304.32605 * 8 7 5 35 35 H 0.96998 * 119.99863 * 180.02562 * 13 12 10 36 36 H 1.09004 * 117.50008 * 215.00724 * 18 9 8 37 37 H 1.09005 * 117.49694 * 0.02562 * 18 9 8 38 38 H 1.09004 * 117.50048 * 359.97438 * 19 9 8 39 39 H 1.08993 * 117.49824 * 144.97463 * 19 9 8 40 40 H 1.08001 * 119.98934 * 359.97438 * 21 20 2 41 41 H 1.07998 * 119.97232 * 180.27751 * 22 21 20 42 42 H 1.07993 * 119.99102 * 179.74956 * 23 22 21 43 43 H 1.08001 * 120.01280 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4766 6 8 1.1127 1.1423 2.3612 7 7 1.8724 -0.4532 3.7025 8 6 1.4032 0.2600 4.8930 9 6 1.8848 -0.4706 6.1481 10 6 1.3191 -1.8522 6.3533 11 1 1.9701 -2.7132 6.3173 12 6 -0.0289 -2.0167 6.5926 13 7 -0.5487 -3.2243 6.6229 14 14 -1.1164 -0.5242 6.8738 15 1 -1.7354 -0.1135 5.5880 16 1 -2.1824 -0.8653 7.8497 17 1 -0.2960 0.5927 7.4072 18 6 3.3250 -0.2226 6.6010 19 6 2.1594 0.3726 7.3948 20 6 2.0322 -0.7104 -1.2306 21 6 1.7031 -2.0353 -1.4467 22 6 2.1589 -2.6854 -2.5782 23 6 2.9539 -2.0148 -3.4892 24 6 3.2889 -0.6919 -3.2723 25 6 2.8281 -0.0379 -2.1420 26 9 3.1555 1.2554 -1.9286 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.1263 -0.7997 1.2055 31 1 1.6054 -1.7199 1.2951 32 1 2.3492 -1.2928 3.7965 33 1 0.3138 0.2961 4.8891 34 1 1.8004 1.2750 4.8885 35 1 -1.4970 -3.3399 6.7908 36 1 3.8633 -1.0587 7.0474 37 1 3.9292 0.4615 6.0051 38 1 1.9974 1.4480 7.3208 39 1 1.9305 -0.0717 8.3634 40 1 1.0862 -2.5616 -0.7334 41 1 1.8975 -3.7194 -2.7485 42 1 3.3128 -2.5249 -4.3708 43 1 3.9095 -0.1681 -3.9842 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431159097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:05 Heat of formation + Delta-G solvation = -48.204175 kcal Electronic energy + Delta-G solvation = -24653.901823 eV Core-core repulsion = 20999.657649 eV Total energy + Delta-G solvation = -3654.244175 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.99688 -39.84087 -38.95445 -37.11436 -35.10172 -33.39484 -32.21553 -30.73944 -30.04510 -28.26279 -26.38105 -25.01968 -23.87016 -22.71668 -21.68092 -20.64086 -19.65379 -19.04418 -17.87400 -17.00919 -16.51948 -16.34737 -15.74199 -15.61661 -15.35631 -15.03065 -14.81917 -14.35133 -14.10216 -13.63180 -13.53399 -13.23286 -13.15234 -12.87966 -12.64748 -12.45619 -12.29668 -12.14908 -12.04372 -11.61425 -11.17519 -11.09095 -10.88497 -10.74336 -10.71630 -10.61386 -10.28992 -9.64194 -9.36654 -9.16591 -9.11891 -8.83130 -8.79236 -8.50725 -8.28502 -6.21081 -4.23409 0.96991 1.00600 3.10617 3.26344 3.36603 3.37809 3.43161 3.73472 4.10605 4.36542 4.48297 4.54248 4.73887 4.86171 4.95747 5.03805 5.11646 5.16267 5.17265 5.30972 5.53737 5.67619 5.68597 5.72039 5.75738 5.85945 5.92673 5.95970 6.03560 6.07596 6.11602 6.19157 6.23067 6.38692 6.42531 6.44726 6.52520 6.69269 6.71008 6.93069 7.04983 7.15934 7.64554 8.17724 8.38043 8.77020 8.80937 9.43036 10.89846 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.003342 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.428820 B = 8377.425371 C = 8725.938993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.038 4.038 3 H 0.092 0.908 4 C -0.133 4.133 5 C 0.507 3.493 6 O -0.556 6.556 7 N -0.702 5.702 8 C 0.154 3.846 9 C -0.018 4.018 10 C -0.491 4.491 11 H 0.078 0.922 12 C 0.084 3.916 13 N -0.892 5.892 14 Si 0.864 3.136 15 H -0.278 1.278 16 H -0.291 1.291 17 H -0.248 1.248 18 C -0.181 4.181 19 C -0.185 4.185 20 C -0.104 4.104 21 C -0.086 4.086 22 C -0.128 4.128 23 C -0.099 4.099 24 C -0.155 4.155 25 C 0.099 3.901 26 F -0.137 7.137 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.407 0.593 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.266 0.734 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.472 1.963 -17.726 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.057 4.057 3 H 0.110 0.890 4 C -0.173 4.173 5 C 0.293 3.707 6 O -0.436 6.436 7 N -0.351 5.351 8 C 0.030 3.970 9 C -0.019 4.019 10 C -0.528 4.528 11 H 0.096 0.904 12 C -0.119 4.119 13 N -0.528 5.528 14 Si 0.691 3.309 15 H -0.204 1.204 16 H -0.218 1.218 17 H -0.171 1.171 18 C -0.218 4.218 19 C -0.223 4.223 20 C -0.105 4.105 21 C -0.104 4.104 22 C -0.146 4.146 23 C -0.117 4.117 24 C -0.174 4.174 25 C 0.080 3.920 26 F -0.116 7.116 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.242 0.758 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.919 2.663 -17.737 18.887 hybrid contribution -0.399 0.438 0.288 0.659 sum 5.521 3.101 -17.449 18.562 Atomic orbital electron populations 1.21914 0.93299 1.01925 1.03174 1.19826 0.97041 0.99646 0.89154 0.88963 1.21723 1.02858 1.00367 0.92332 1.20479 0.79047 0.86402 0.84798 1.90634 1.44369 1.21618 1.86931 1.45873 1.57592 1.26465 1.05158 1.21057 0.98366 0.93472 0.84060 1.19617 0.95183 0.96475 0.90629 1.20226 0.93445 0.89151 1.49955 0.90429 1.24904 0.97780 0.95525 0.93735 1.69895 1.13128 1.21533 1.48252 0.87051 0.80645 0.84737 0.78451 1.20417 1.21773 1.17105 1.22801 0.91591 1.02528 1.04848 1.23028 1.04057 0.97457 0.97785 1.20039 0.98522 0.95080 0.96900 1.21009 0.98799 0.93111 0.97486 1.21227 0.98448 1.00454 0.94514 1.20986 0.97701 0.93557 0.99482 1.21125 1.02899 0.96017 0.97329 1.17606 0.99102 0.79178 0.96118 1.91497 1.90929 1.34376 1.94777 0.92798 0.90193 0.92899 0.88987 0.88665 0.75843 0.92564 0.93328 0.92458 0.89630 0.90933 0.91132 0.89317 0.84771 0.85331 0.85250 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.75 37.15 0.33 -1.65 16 2 C -0.04 -0.50 2.19 -91.77 -0.20 -0.70 16 3 H 0.09 1.39 6.85 -51.93 -0.36 1.04 16 4 C -0.13 -1.78 4.91 -27.88 -0.14 -1.91 16 5 C 0.51 8.98 7.43 -10.99 -0.08 8.89 16 6 O -0.56 -11.54 14.21 5.56 0.08 -11.46 16 7 N -0.70 -13.09 5.48 -60.29 -0.33 -13.42 16 8 C 0.15 3.26 5.17 -4.04 -0.02 3.24 16 9 C -0.02 -0.39 0.85 -155.66 -0.13 -0.52 16 10 C -0.49 -12.65 9.14 -34.44 -0.31 -12.97 16 11 H 0.08 2.16 8.06 -52.48 -0.42 1.74 16 12 C 0.08 2.29 5.46 -17.82 -0.10 2.19 16 13 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 14 Si 0.86 20.96 25.08 -169.99 -4.26 16.69 16 15 H -0.28 -6.87 7.03 56.52 0.40 -6.47 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.25 -5.66 5.64 56.52 0.32 -5.34 16 18 C -0.18 -3.43 9.96 -26.70 -0.27 -3.70 16 19 C -0.19 -3.75 7.91 -26.70 -0.21 -3.96 16 20 C -0.10 -1.21 4.79 -104.55 -0.50 -1.71 16 21 C -0.09 -0.85 8.76 -39.59 -0.35 -1.20 16 22 C -0.13 -1.07 10.04 -39.57 -0.40 -1.47 16 23 C -0.10 -0.79 10.04 -39.59 -0.40 -1.19 16 24 C -0.15 -1.45 10.03 -39.52 -0.40 -1.85 16 25 C 0.10 1.16 7.25 -39.42 -0.29 0.88 16 26 F -0.14 -1.81 16.20 2.25 0.04 -1.77 16 27 H 0.05 0.65 7.41 -51.93 -0.38 0.27 16 28 H 0.08 1.30 6.18 -51.93 -0.32 0.98 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.10 1.14 7.56 -51.93 -0.39 0.75 16 32 H 0.41 7.06 8.33 -40.82 -0.34 6.72 16 33 H 0.06 1.32 5.22 -51.93 -0.27 1.05 16 34 H 0.05 1.00 8.07 -51.93 -0.42 0.58 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 40 H 0.13 1.19 7.17 -52.49 -0.38 0.81 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -30.35 353.55 -8.15 -38.50 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.31 Total: 8.83 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -3.46 Total: -17.63 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.44 Total: -38.48 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.26 Total: 16.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.35 -8.15 -38.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431159097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.706 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds