Wall clock time and date at job start Tue Mar 31 2020 09:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47549 * 2 1 4 4 C 1.52997 * 109.47400 * 120.00364 * 2 1 3 5 5 C 1.50702 * 109.47359 * 294.99882 * 4 2 1 6 6 O 1.21279 * 119.99362 * 353.70047 * 5 4 2 7 7 N 1.34770 * 120.00422 * 173.69839 * 5 4 2 8 8 C 1.46498 * 120.00036 * 184.17798 * 7 5 4 9 9 C 1.53009 * 109.47052 * 184.32703 * 8 7 5 10 10 C 1.50693 * 115.54892 * 294.97915 * 9 8 7 11 11 H 1.08005 * 120.00368 * 114.77852 * 10 9 8 12 12 C 1.37885 * 120.00401 * 294.50254 * 10 9 8 13 13 N 1.31506 * 120.00221 * 172.39419 * 12 10 9 14 14 Si 1.86796 * 119.99402 * 352.39278 * 12 10 9 15 15 H 1.48501 * 109.47222 * 94.04543 * 14 12 10 16 16 H 1.48496 * 109.47335 * 214.04302 * 14 12 10 17 17 H 1.48494 * 109.47553 * 334.04468 * 14 12 10 18 18 C 1.52994 * 117.49813 * 80.65003 * 9 8 7 19 19 C 1.52996 * 117.49811 * 149.30820 * 9 8 7 20 20 C 1.50708 * 109.46819 * 240.00280 * 2 1 3 21 21 C 1.38214 * 120.01137 * 299.72572 * 20 2 1 22 22 C 1.38228 * 120.02358 * 179.72321 * 21 20 2 23 23 C 1.38266 * 120.05118 * 0.55309 * 22 21 20 24 24 C 1.38176 * 120.02310 * 359.72074 * 23 22 21 25 25 C 1.38434 * 120.01303 * 120.00254 * 20 2 1 26 26 F 1.35107 * 120.02532 * 0.02562 * 25 20 2 27 27 H 1.09001 * 109.47549 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47087 * 299.99672 * 1 2 3 29 29 H 1.08995 * 109.47244 * 59.99698 * 1 2 3 30 30 H 1.08996 * 109.47689 * 174.99273 * 4 2 1 31 31 H 1.09001 * 109.47218 * 54.99692 * 4 2 1 32 32 H 0.97006 * 119.99860 * 4.16955 * 7 5 4 33 33 H 1.09001 * 109.47344 * 64.32745 * 8 7 5 34 34 H 1.08995 * 109.46975 * 304.32605 * 8 7 5 35 35 H 0.96998 * 119.99863 * 180.02562 * 13 12 10 36 36 H 1.09004 * 117.50008 * 215.00724 * 18 9 8 37 37 H 1.09005 * 117.49694 * 0.02562 * 18 9 8 38 38 H 1.09004 * 117.50048 * 359.97438 * 19 9 8 39 39 H 1.08993 * 117.49824 * 144.97463 * 19 9 8 40 40 H 1.08001 * 119.98934 * 359.97438 * 21 20 2 41 41 H 1.07998 * 119.97232 * 180.27751 * 22 21 20 42 42 H 1.07993 * 119.99102 * 179.74956 * 23 22 21 43 43 H 1.08001 * 120.01280 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4766 6 8 1.1127 1.1423 2.3612 7 7 1.8724 -0.4532 3.7025 8 6 1.4032 0.2600 4.8930 9 6 1.8848 -0.4706 6.1481 10 6 1.3191 -1.8522 6.3533 11 1 1.9701 -2.7132 6.3173 12 6 -0.0289 -2.0167 6.5926 13 7 -0.5487 -3.2243 6.6229 14 14 -1.1164 -0.5242 6.8738 15 1 -1.7354 -0.1135 5.5880 16 1 -2.1824 -0.8653 7.8497 17 1 -0.2960 0.5927 7.4072 18 6 3.3250 -0.2226 6.6010 19 6 2.1594 0.3726 7.3948 20 6 2.0322 -0.7104 -1.2306 21 6 1.7031 -2.0353 -1.4467 22 6 2.1589 -2.6854 -2.5782 23 6 2.9539 -2.0148 -3.4892 24 6 3.2889 -0.6919 -3.2723 25 6 2.8281 -0.0379 -2.1420 26 9 3.1555 1.2554 -1.9286 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.1263 -0.7997 1.2055 31 1 1.6054 -1.7199 1.2951 32 1 2.3492 -1.2928 3.7965 33 1 0.3138 0.2961 4.8891 34 1 1.8004 1.2750 4.8885 35 1 -1.4970 -3.3399 6.7908 36 1 3.8633 -1.0587 7.0474 37 1 3.9292 0.4615 6.0051 38 1 1.9974 1.4480 7.3208 39 1 1.9305 -0.0717 8.3634 40 1 1.0862 -2.5616 -0.7334 41 1 1.8975 -3.7194 -2.7485 42 1 3.3128 -2.5249 -4.3708 43 1 3.9095 -0.1681 -3.9842 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431159097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:04 Heat of formation + Delta-G solvation = -65.615214 kcal Electronic energy + Delta-G solvation = -24654.656823 eV Core-core repulsion = 20999.657649 eV Total energy + Delta-G solvation = -3654.999174 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.89445 -41.05400 -39.97983 -38.73585 -36.13527 -34.94821 -34.27138 -31.45339 -30.94483 -29.51168 -28.09537 -26.71540 -24.77212 -23.50469 -23.25365 -21.75542 -21.20747 -20.56208 -18.81060 -18.52353 -17.86356 -17.35302 -17.04606 -16.74170 -16.50926 -16.44356 -16.35024 -15.46822 -15.12598 -14.94221 -14.89672 -14.70108 -14.40606 -14.10885 -14.01911 -13.84791 -13.69772 -13.13171 -13.01392 -12.94614 -12.71072 -12.54353 -12.24318 -12.17141 -12.08894 -11.82347 -11.68688 -11.47314 -11.03991 -10.84265 -10.68657 -10.31886 -9.88511 -9.86115 -9.57970 -8.31743 -6.34666 0.22478 0.29883 1.31035 1.38232 1.48388 1.70098 2.30183 2.35066 2.69055 2.99457 3.32749 3.34592 3.56513 3.69603 3.93875 4.01603 4.05604 4.15429 4.21634 4.31438 4.41093 4.42836 4.45243 4.46282 4.53178 4.63613 4.74356 4.80537 4.90724 4.92225 5.03680 5.07598 5.10680 5.15047 5.24149 5.26754 5.34222 5.48817 5.50403 5.53642 5.61255 5.69304 5.99932 6.29895 6.68054 6.76539 7.33183 7.34946 8.82437 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.003342 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.428820 B = 8377.425371 C = 8725.938993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.032 4.032 3 H 0.067 0.933 4 C -0.123 4.123 5 C 0.504 3.496 6 O -0.588 6.588 7 N -0.703 5.703 8 C 0.161 3.839 9 C -0.041 4.041 10 C -0.476 4.476 11 H 0.047 0.953 12 C 0.037 3.963 13 N -0.937 5.937 14 Si 0.911 3.089 15 H -0.289 1.289 16 H -0.295 1.295 17 H -0.224 1.224 18 C -0.155 4.155 19 C -0.184 4.184 20 C -0.117 4.117 21 C -0.093 4.093 22 C -0.124 4.124 23 C -0.092 4.092 24 C -0.156 4.156 25 C 0.071 3.929 26 F -0.154 7.154 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.412 0.588 33 H 0.030 0.970 34 H 0.057 0.943 35 H 0.264 0.736 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.143 0.857 41 H 0.156 0.844 42 H 0.162 0.838 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.846 1.762 -19.241 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.051 4.051 3 H 0.085 0.915 4 C -0.163 4.163 5 C 0.292 3.708 6 O -0.470 6.470 7 N -0.353 5.353 8 C 0.037 3.963 9 C -0.042 4.042 10 C -0.514 4.514 11 H 0.066 0.934 12 C -0.162 4.162 13 N -0.576 5.576 14 Si 0.737 3.263 15 H -0.216 1.216 16 H -0.222 1.222 17 H -0.146 1.146 18 C -0.192 4.192 19 C -0.222 4.222 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.141 4.141 23 C -0.110 4.110 24 C -0.175 4.175 25 C 0.052 3.948 26 F -0.133 7.133 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.249 0.751 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.160 0.840 41 H 0.174 0.826 42 H 0.180 0.820 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.324 2.469 -19.249 20.743 hybrid contribution -0.753 0.441 0.685 1.110 sum 6.570 2.910 -18.564 19.906 Atomic orbital electron populations 1.21853 0.93832 1.02426 1.01810 1.19664 0.96581 0.98635 0.90238 0.91455 1.21739 1.04184 1.00320 0.90022 1.21213 0.77961 0.86157 0.85485 1.90621 1.45699 1.23299 1.87385 1.45886 1.57756 1.26646 1.04999 1.20831 0.96807 0.94081 0.84627 1.19458 0.97898 0.94975 0.91900 1.20355 0.92753 0.90395 1.47857 0.93443 1.25519 0.99222 0.97247 0.94199 1.70004 1.13365 1.23396 1.50871 0.86303 0.79338 0.82951 0.77666 1.21566 1.22219 1.14640 1.22841 0.90361 1.02486 1.03477 1.23077 1.04315 0.98265 0.96509 1.19878 0.99681 0.95863 0.96343 1.21178 0.99035 0.92386 0.98490 1.21590 0.97394 1.01619 0.93537 1.21402 0.96531 0.92858 1.00187 1.21403 1.02675 0.96753 0.96668 1.17953 1.00486 0.78866 0.97498 1.91449 1.91246 1.35602 1.95021 0.91310 0.93349 0.92372 0.86963 0.86819 0.75149 0.95211 0.92508 0.92641 0.89473 0.88409 0.89163 0.89972 0.83961 0.82637 0.82043 0.83346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 8.75 71.98 0.63 -3.25 16 2 C -0.03 -0.85 2.19 -11.54 -0.03 -0.88 16 3 H 0.07 2.11 6.85 -2.39 -0.02 2.09 16 4 C -0.12 -3.18 4.91 29.85 0.15 -3.03 16 5 C 0.50 17.73 7.43 87.66 0.65 18.39 16 6 O -0.59 -24.81 14.21 -3.03 -0.04 -24.86 16 7 N -0.70 -25.78 5.48 -463.06 -2.54 -28.31 16 8 C 0.16 6.67 5.17 86.38 0.45 7.11 16 9 C -0.04 -1.74 0.85 -52.93 -0.04 -1.78 16 10 C -0.48 -24.63 9.14 25.60 0.23 -24.39 16 11 H 0.05 2.69 8.06 -2.91 -0.02 2.67 16 12 C 0.04 2.05 5.46 84.66 0.46 2.51 16 13 N -0.94 -55.57 13.96 21.45 0.30 -55.27 16 14 Si 0.91 43.53 25.08 68.60 1.72 45.25 16 15 H -0.29 -14.21 7.03 99.48 0.70 -13.52 16 16 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 17 H -0.22 -9.71 5.64 99.48 0.56 -9.15 16 18 C -0.15 -5.46 9.96 30.61 0.30 -5.16 16 19 C -0.18 -6.98 7.91 30.62 0.24 -6.74 16 20 C -0.12 -2.59 4.79 -19.82 -0.09 -2.68 16 21 C -0.09 -1.62 8.76 22.26 0.20 -1.42 16 22 C -0.12 -1.62 10.04 22.27 0.22 -1.40 16 23 C -0.09 -1.13 10.04 22.26 0.22 -0.91 16 24 C -0.16 -2.58 10.03 22.31 0.22 -2.36 16 25 C 0.07 1.60 7.25 22.37 0.16 1.77 16 26 F -0.15 -4.13 16.20 44.97 0.73 -3.41 16 27 H 0.07 1.62 7.41 -2.39 -0.02 1.60 16 28 H 0.05 1.62 6.18 -2.39 -0.01 1.61 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.11 2.53 7.56 -2.39 -0.02 2.51 16 32 H 0.41 13.99 8.33 -92.70 -0.77 13.21 16 33 H 0.03 1.39 5.22 -2.39 -0.01 1.38 16 34 H 0.06 2.25 8.07 -2.39 -0.02 2.23 16 35 H 0.26 14.97 8.31 -92.71 -0.77 14.19 16 36 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 38 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.14 2.17 7.17 -2.91 -0.02 2.15 16 41 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 42 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 43 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -67.36 353.55 4.24 -63.11 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.09 Total: 27.72 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 3.98 Total: -24.23 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -2.24 Total: -83.59 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.04 Total: -24.86 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.73 Total: -3.41 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.72 Total: 45.25 kcal Total: -67.36 4.24 -63.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431159097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.503 kcal (2) G-P(sol) polarization free energy of solvation -67.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds