Wall clock time and date at job start Tue Mar 31 2020 09:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47364 * 2 1 4 4 C 1.53004 * 109.46888 * 240.00019 * 2 1 3 5 5 C 1.50693 * 109.47005 * 65.00086 * 4 2 1 6 6 C 1.38277 * 119.98817 * 90.00183 * 5 4 2 7 7 C 1.38222 * 120.05278 * 180.02562 * 6 5 4 8 8 C 1.38222 * 120.02474 * 359.95358 * 7 6 5 9 9 C 1.38434 * 119.97540 * 0.02562 * 8 7 6 10 10 F 1.35099 * 120.02925 * 179.97438 * 9 8 7 11 11 C 1.38169 * 119.98963 * 269.72222 * 5 4 2 12 12 C 1.50698 * 109.46910 * 120.00127 * 2 1 3 13 13 O 1.21286 * 120.00002 * 85.53279 * 12 2 1 14 14 N 1.34773 * 120.00283 * 265.52910 * 12 2 1 15 15 C 1.46491 * 120.00604 * 185.12196 * 14 12 2 16 16 C 1.52999 * 109.47406 * 175.09264 * 15 14 12 17 17 C 1.50697 * 115.54660 * 298.05815 * 16 15 14 18 18 H 1.08010 * 119.99626 * 93.77346 * 17 16 15 19 19 C 1.37876 * 120.00277 * 273.76819 * 17 16 15 20 20 N 1.31509 * 119.99992 * 7.20548 * 19 17 16 21 21 Si 1.86806 * 119.99739 * 187.20766 * 19 17 16 22 22 H 1.48494 * 109.47056 * 90.00292 * 21 19 17 23 23 H 1.48500 * 109.46743 * 209.99837 * 21 19 17 24 24 H 1.48497 * 109.47020 * 329.99595 * 21 19 17 25 25 C 1.53001 * 117.49783 * 152.39240 * 16 15 14 26 26 C 1.52994 * 117.49949 * 83.73360 * 16 15 14 27 27 H 1.08996 * 109.47109 * 173.95543 * 1 2 3 28 28 H 1.09004 * 109.46803 * 53.95624 * 1 2 3 29 29 H 1.08999 * 109.46959 * 293.95193 * 1 2 3 30 30 H 1.08999 * 109.46575 * 185.00390 * 4 2 1 31 31 H 1.08999 * 109.46964 * 305.00032 * 4 2 1 32 32 H 1.07992 * 119.96970 * 359.97438 * 6 5 4 33 33 H 1.07994 * 119.98449 * 179.97438 * 7 6 5 34 34 H 1.08002 * 120.00937 * 179.97438 * 8 7 6 35 35 H 1.08004 * 120.01517 * 359.97438 * 11 5 4 36 36 H 0.97003 * 119.99236 * 5.12122 * 14 12 2 37 37 H 1.09008 * 109.47238 * 295.09435 * 15 14 12 38 38 H 1.08998 * 109.47434 * 55.08763 * 15 14 12 39 39 H 0.97005 * 119.99805 * 185.02655 * 20 19 17 40 40 H 1.09002 * 117.50101 * 0.02562 * 25 16 15 41 41 H 1.09002 * 117.49646 * 145.01843 * 25 16 15 42 42 H 1.09001 * 117.50026 * 214.97707 * 26 16 15 43 43 H 1.09000 * 117.50364 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4765 6 6 2.4819 1.0332 -2.9792 7 6 2.1173 1.7482 -4.1045 8 6 0.9122 1.4875 -4.7292 9 6 0.0700 0.5102 -4.2272 10 9 -1.1083 0.2549 -4.8367 11 6 0.4386 -0.2089 -3.1025 12 6 2.0323 -0.7104 1.2304 13 8 2.1573 -1.9168 1.2256 14 7 2.3427 -0.0053 2.3363 15 6 2.9361 -0.6804 3.4930 16 6 3.3015 0.3568 4.5568 17 6 4.3250 1.3817 4.1407 18 1 4.0051 2.3319 3.7389 19 6 5.6695 1.1065 4.2729 20 7 6.0625 -0.0974 4.6271 21 14 6.9328 2.4440 3.9491 22 1 7.2125 3.1765 5.2102 23 1 8.1870 1.8287 3.4455 24 1 6.4032 3.3898 2.9341 25 6 3.3146 -0.1025 6.0162 26 6 2.1947 0.8104 5.5107 27 1 -0.3633 -1.0219 -0.1082 28 1 -0.3633 0.6047 -0.8310 29 1 -0.3633 0.4172 0.9392 30 1 3.1263 -0.7995 -1.2056 31 1 1.6053 -1.7198 -1.2952 32 1 3.4235 1.2375 -2.4916 33 1 2.7744 2.5107 -4.4959 34 1 0.6274 2.0467 -5.6082 35 1 -0.2156 -0.9748 -2.7127 36 1 2.1731 0.9493 2.3661 37 1 2.2190 -1.3889 3.9076 38 1 3.8345 -1.2132 3.1814 39 1 7.0025 -0.2721 4.7911 40 1 3.0633 -1.1437 6.2184 41 1 4.0632 0.3370 6.6754 42 1 2.2070 1.8502 5.8377 43 1 1.2061 0.3703 5.3803 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431164247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:44 Heat of formation + Delta-G solvation = -55.054112 kcal Electronic energy + Delta-G solvation = -24338.706588 eV Core-core repulsion = 20684.165377 eV Total energy + Delta-G solvation = -3654.541210 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.05937 -39.85772 -38.88861 -36.78624 -34.78722 -33.28736 -32.00670 -31.05118 -30.69542 -26.93891 -26.56286 -25.34434 -23.22720 -22.87276 -21.35144 -21.06939 -19.62021 -19.04731 -17.43497 -16.85534 -16.51064 -16.33665 -16.04010 -15.76750 -15.10571 -14.81130 -14.62589 -14.36284 -14.03127 -13.81182 -13.47799 -13.38664 -12.98115 -12.83174 -12.51205 -12.27303 -12.08758 -11.85447 -11.70198 -11.58848 -11.24699 -11.11273 -11.07072 -10.91900 -10.87743 -10.57581 -10.30138 -9.68954 -9.26461 -9.11512 -8.98368 -8.81777 -8.51151 -8.31811 -8.08376 -6.12489 -4.20703 0.96653 1.01115 3.17154 3.23105 3.31556 3.31961 3.38892 3.83654 4.06382 4.32840 4.52299 4.60411 4.83271 4.89767 5.02576 5.08247 5.15991 5.16922 5.19386 5.31197 5.58501 5.61375 5.64944 5.77501 5.85882 5.89209 5.93105 6.01143 6.12332 6.15370 6.16571 6.29870 6.40985 6.44719 6.51957 6.66202 6.71423 6.85676 7.05712 7.26860 7.39165 7.45318 7.77372 8.29265 8.29845 8.80391 8.87672 9.46806 10.96089 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.003252 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.255657 B = 8607.299063 C = 9603.874161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.067 4.067 5 C -0.043 4.043 6 C -0.126 4.126 7 C -0.089 4.089 8 C -0.162 4.162 9 C 0.096 3.904 10 F -0.143 7.143 11 C -0.149 4.149 12 C 0.509 3.491 13 O -0.558 6.558 14 N -0.701 5.701 15 C 0.162 3.838 16 C 0.027 3.973 17 C -0.499 4.499 18 H 0.060 0.940 19 C 0.074 3.926 20 N -0.873 5.873 21 Si 0.888 3.112 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.273 1.273 25 C -0.148 4.148 26 C -0.211 4.211 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.399 0.601 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.261 0.739 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.598 3.285 -14.509 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.109 0.891 4 C -0.104 4.104 5 C -0.043 4.043 6 C -0.144 4.144 7 C -0.107 4.107 8 C -0.181 4.181 9 C 0.077 3.923 10 F -0.121 7.121 11 C -0.168 4.168 12 C 0.294 3.706 13 O -0.437 6.437 14 N -0.348 5.348 15 C 0.039 3.961 16 C 0.027 3.973 17 C -0.537 4.537 18 H 0.078 0.922 19 C -0.130 4.130 20 N -0.508 5.508 21 Si 0.715 3.285 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.198 1.198 25 C -0.186 4.186 26 C -0.248 4.248 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.233 0.767 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.344 2.271 -14.532 17.426 hybrid contribution 0.560 1.157 -0.110 1.290 sum -8.784 3.427 -14.642 17.416 Atomic orbital electron populations 1.21786 0.92975 1.02703 1.02439 1.21217 0.97658 1.00652 0.92938 0.89097 1.20501 1.02276 0.98533 0.89124 1.19784 0.93024 0.95621 0.95908 1.21243 1.00411 0.96085 0.96669 1.21012 0.95504 0.99008 0.95161 1.21118 0.95487 0.99300 1.02226 1.17711 0.82736 0.98021 0.93864 1.91493 1.44857 1.93431 1.82363 1.21100 0.98232 1.01751 0.95694 1.20388 0.78004 0.87744 0.84423 1.90652 1.54710 1.14369 1.83954 1.45984 1.61532 1.12342 1.14977 1.20997 0.95990 0.93950 0.85135 1.19041 0.94793 0.95980 0.87520 1.20342 0.89505 0.99921 1.43884 0.92210 1.24963 0.98337 0.94948 0.94756 1.70016 1.16229 1.19105 1.45482 0.86667 0.81163 0.82076 0.78565 1.20640 1.21264 1.19823 1.22477 0.99554 0.96594 1.00011 1.23041 0.93066 0.99095 1.09635 0.91912 0.91684 0.92055 0.89936 0.89441 0.85013 0.85033 0.85047 0.84656 0.76665 0.94779 0.90831 0.92873 0.91680 0.89833 0.90337 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.56 37.16 0.32 -1.28 16 2 C -0.10 -1.34 2.70 -91.77 -0.25 -1.59 16 3 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.07 -0.82 4.41 -27.88 -0.12 -0.94 16 5 C -0.04 -0.46 4.71 -104.64 -0.49 -0.95 16 6 C -0.13 -1.24 9.70 -39.57 -0.38 -1.62 16 7 C -0.09 -0.77 10.04 -39.59 -0.40 -1.17 16 8 C -0.16 -1.49 10.03 -39.51 -0.40 -1.89 16 9 C 0.10 1.01 7.30 -39.42 -0.29 0.73 16 10 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 11 C -0.15 -1.56 8.12 -39.51 -0.32 -1.88 16 12 C 0.51 9.07 6.83 -10.99 -0.08 8.99 16 13 O -0.56 -11.95 16.37 5.55 0.09 -11.86 16 14 N -0.70 -13.14 5.42 -60.30 -0.33 -13.47 16 15 C 0.16 3.61 5.51 -4.05 -0.02 3.58 16 16 C 0.03 0.63 1.41 -155.66 -0.22 0.41 16 17 C -0.50 -12.52 8.57 -34.44 -0.30 -12.81 16 18 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 19 C 0.07 1.93 5.38 -17.82 -0.10 1.83 16 20 N -0.87 -23.84 12.90 55.43 0.72 -23.12 16 21 Si 0.89 20.11 29.55 -169.99 -5.02 15.09 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 C -0.15 -3.32 9.40 -26.69 -0.25 -3.57 16 26 C -0.21 -4.28 9.95 -26.70 -0.27 -4.55 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.65 6.69 -51.93 -0.35 0.30 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 31 H 0.09 1.12 7.96 -51.93 -0.41 0.70 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.14 1.31 8.05 -52.48 -0.42 0.88 16 36 H 0.40 6.81 8.37 -40.82 -0.34 6.47 16 37 H 0.03 0.75 8.11 -51.92 -0.42 0.33 16 38 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 39 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 40 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 42 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -29.02 368.16 -9.07 -38.10 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.56 Total: 8.00 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -3.56 Total: -16.72 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.39 Total: -36.59 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.02 -9.07 -38.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431164247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.958 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds