Wall clock time and date at job start Tue Mar 31 2020 09:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47364 * 2 1 4 4 C 1.53004 * 109.46888 * 240.00019 * 2 1 3 5 5 C 1.50693 * 109.47005 * 65.00086 * 4 2 1 6 6 C 1.38277 * 119.98817 * 90.00183 * 5 4 2 7 7 C 1.38222 * 120.05278 * 180.02562 * 6 5 4 8 8 C 1.38222 * 120.02474 * 359.95358 * 7 6 5 9 9 C 1.38434 * 119.97540 * 0.02562 * 8 7 6 10 10 F 1.35099 * 120.02925 * 179.97438 * 9 8 7 11 11 C 1.38169 * 119.98963 * 269.72222 * 5 4 2 12 12 C 1.50698 * 109.46910 * 120.00127 * 2 1 3 13 13 O 1.21286 * 120.00002 * 85.53279 * 12 2 1 14 14 N 1.34773 * 120.00283 * 265.52910 * 12 2 1 15 15 C 1.46491 * 120.00604 * 185.12196 * 14 12 2 16 16 C 1.52999 * 109.47406 * 175.09264 * 15 14 12 17 17 C 1.50697 * 115.54660 * 298.05815 * 16 15 14 18 18 H 1.08010 * 119.99626 * 93.77346 * 17 16 15 19 19 C 1.37876 * 120.00277 * 273.76819 * 17 16 15 20 20 N 1.31509 * 119.99992 * 7.20548 * 19 17 16 21 21 Si 1.86806 * 119.99739 * 187.20766 * 19 17 16 22 22 H 1.48494 * 109.47056 * 90.00292 * 21 19 17 23 23 H 1.48500 * 109.46743 * 209.99837 * 21 19 17 24 24 H 1.48497 * 109.47020 * 329.99595 * 21 19 17 25 25 C 1.53001 * 117.49783 * 152.39240 * 16 15 14 26 26 C 1.52994 * 117.49949 * 83.73360 * 16 15 14 27 27 H 1.08996 * 109.47109 * 173.95543 * 1 2 3 28 28 H 1.09004 * 109.46803 * 53.95624 * 1 2 3 29 29 H 1.08999 * 109.46959 * 293.95193 * 1 2 3 30 30 H 1.08999 * 109.46575 * 185.00390 * 4 2 1 31 31 H 1.08999 * 109.46964 * 305.00032 * 4 2 1 32 32 H 1.07992 * 119.96970 * 359.97438 * 6 5 4 33 33 H 1.07994 * 119.98449 * 179.97438 * 7 6 5 34 34 H 1.08002 * 120.00937 * 179.97438 * 8 7 6 35 35 H 1.08004 * 120.01517 * 359.97438 * 11 5 4 36 36 H 0.97003 * 119.99236 * 5.12122 * 14 12 2 37 37 H 1.09008 * 109.47238 * 295.09435 * 15 14 12 38 38 H 1.08998 * 109.47434 * 55.08763 * 15 14 12 39 39 H 0.97005 * 119.99805 * 185.02655 * 20 19 17 40 40 H 1.09002 * 117.50101 * 0.02562 * 25 16 15 41 41 H 1.09002 * 117.49646 * 145.01843 * 25 16 15 42 42 H 1.09001 * 117.50026 * 214.97707 * 26 16 15 43 43 H 1.09000 * 117.50364 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4765 6 6 2.4819 1.0332 -2.9792 7 6 2.1173 1.7482 -4.1045 8 6 0.9122 1.4875 -4.7292 9 6 0.0700 0.5102 -4.2272 10 9 -1.1083 0.2549 -4.8367 11 6 0.4386 -0.2089 -3.1025 12 6 2.0323 -0.7104 1.2304 13 8 2.1573 -1.9168 1.2256 14 7 2.3427 -0.0053 2.3363 15 6 2.9361 -0.6804 3.4930 16 6 3.3015 0.3568 4.5568 17 6 4.3250 1.3817 4.1407 18 1 4.0051 2.3319 3.7389 19 6 5.6695 1.1065 4.2729 20 7 6.0625 -0.0974 4.6271 21 14 6.9328 2.4440 3.9491 22 1 7.2125 3.1765 5.2102 23 1 8.1870 1.8287 3.4455 24 1 6.4032 3.3898 2.9341 25 6 3.3146 -0.1025 6.0162 26 6 2.1947 0.8104 5.5107 27 1 -0.3633 -1.0219 -0.1082 28 1 -0.3633 0.6047 -0.8310 29 1 -0.3633 0.4172 0.9392 30 1 3.1263 -0.7995 -1.2056 31 1 1.6053 -1.7198 -1.2952 32 1 3.4235 1.2375 -2.4916 33 1 2.7744 2.5107 -4.4959 34 1 0.6274 2.0467 -5.6082 35 1 -0.2156 -0.9748 -2.7127 36 1 2.1731 0.9493 2.3661 37 1 2.2190 -1.3889 3.9076 38 1 3.8345 -1.2132 3.1814 39 1 7.0025 -0.2721 4.7911 40 1 3.0633 -1.1437 6.2184 41 1 4.0632 0.3370 6.6754 42 1 2.2070 1.8502 5.8377 43 1 1.2061 0.3703 5.3803 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431164247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:44 Heat of formation + Delta-G solvation = -69.539333 kcal Electronic energy + Delta-G solvation = -24339.334714 eV Core-core repulsion = 20684.165377 eV Total energy + Delta-G solvation = -3655.169336 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.86787 -41.04724 -39.97098 -38.50404 -35.84740 -34.91200 -33.95402 -31.92393 -31.45605 -28.25577 -27.82808 -27.21683 -24.35005 -23.61343 -22.95994 -22.16510 -21.31999 -20.54690 -18.44481 -18.20956 -17.71557 -17.25444 -17.06265 -16.73565 -16.60801 -16.48917 -16.13398 -15.64474 -15.24736 -14.95153 -14.64989 -14.51113 -14.29874 -14.01499 -13.67646 -13.50817 -13.36977 -13.12936 -13.01488 -12.97078 -12.74133 -12.60858 -12.36873 -12.17923 -12.03958 -11.97247 -11.84138 -11.48021 -10.83353 -10.75671 -10.43456 -10.04105 -9.87896 -9.79004 -9.59868 -8.09770 -6.22331 0.20141 0.27449 1.43839 1.46401 1.54123 1.74995 2.37251 2.45347 2.67285 3.19834 3.26894 3.48582 3.67497 3.79014 3.91512 4.03572 4.08938 4.22919 4.27070 4.31592 4.43578 4.48798 4.55598 4.66695 4.69655 4.72788 4.82287 4.86469 4.97558 5.00521 5.07471 5.12571 5.16711 5.20011 5.25825 5.27878 5.41018 5.58115 5.60488 5.62006 5.70890 5.79152 5.97483 6.37517 6.80273 6.86302 7.41613 7.48000 8.98623 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.003252 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.255657 B = 8607.299063 C = 9603.874161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.109 0.891 4 C -0.061 4.061 5 C -0.050 4.050 6 C -0.131 4.131 7 C -0.084 4.084 8 C -0.159 4.159 9 C 0.080 3.920 10 F -0.150 7.150 11 C -0.153 4.153 12 C 0.507 3.493 13 O -0.598 6.598 14 N -0.697 5.697 15 C 0.178 3.822 16 C 0.006 3.994 17 C -0.501 4.501 18 H 0.065 0.935 19 C 0.025 3.975 20 N -0.908 5.908 21 Si 0.947 3.053 22 H -0.279 1.279 23 H -0.294 1.294 24 H -0.261 1.261 25 C -0.161 4.161 26 C -0.176 4.176 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.139 0.861 33 H 0.159 0.841 34 H 0.152 0.848 35 H 0.138 0.862 36 H 0.410 0.590 37 H 0.033 0.967 38 H 0.029 0.971 39 H 0.258 0.742 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.554 5.611 -15.914 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.127 0.873 4 C -0.099 4.099 5 C -0.050 4.050 6 C -0.149 4.149 7 C -0.102 4.102 8 C -0.177 4.177 9 C 0.061 3.939 10 F -0.129 7.129 11 C -0.172 4.172 12 C 0.294 3.706 13 O -0.479 6.479 14 N -0.346 5.346 15 C 0.054 3.946 16 C 0.005 3.995 17 C -0.539 4.539 18 H 0.083 0.917 19 C -0.176 4.176 20 N -0.545 5.545 21 Si 0.773 3.227 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.185 1.185 25 C -0.200 4.200 26 C -0.214 4.214 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.157 0.843 33 H 0.177 0.823 34 H 0.170 0.830 35 H 0.156 0.844 36 H 0.246 0.754 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.324 4.636 -15.948 19.556 hybrid contribution 0.840 0.412 0.304 0.984 sum -9.485 5.048 -15.644 18.978 Atomic orbital electron populations 1.21768 0.91272 1.02850 1.03449 1.21215 0.98860 1.00790 0.90465 0.87297 1.20384 1.01451 0.98328 0.89736 1.19580 0.93589 0.96263 0.95611 1.21433 1.00508 0.95813 0.97130 1.21311 0.95542 0.99021 0.94348 1.21415 0.95175 0.98580 1.02563 1.17901 0.82951 0.98866 0.94218 1.91474 1.45335 1.93589 1.82485 1.21132 0.98265 1.01925 0.95899 1.21259 0.76728 0.87384 0.85191 1.90631 1.56240 1.16424 1.84646 1.45899 1.61375 1.12803 1.14525 1.20554 0.94235 0.93734 0.86106 1.19069 0.96284 0.96310 0.87818 1.20671 0.90003 1.00321 1.42906 0.91675 1.25682 1.00313 0.96601 0.94962 1.70147 1.16203 1.20885 1.47283 0.85728 0.78631 0.79788 0.78558 1.20476 1.22007 1.18489 1.22419 1.00638 0.97361 0.99542 1.23029 0.93065 0.99129 1.06132 0.92465 0.89836 0.91606 0.91031 0.90524 0.84284 0.82307 0.83041 0.84447 0.75427 0.94913 0.95274 0.93320 0.91270 0.91843 0.89470 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.56 71.98 0.62 -2.21 16 2 C -0.09 -2.29 2.70 -11.54 -0.03 -2.32 16 3 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 4 C -0.06 -1.47 4.41 29.85 0.13 -1.34 16 5 C -0.05 -1.00 4.71 -19.87 -0.09 -1.09 16 6 C -0.13 -2.27 9.70 22.28 0.22 -2.05 16 7 C -0.08 -1.20 10.04 22.26 0.22 -0.98 16 8 C -0.16 -2.47 10.03 22.31 0.22 -2.24 16 9 C 0.08 1.54 7.30 22.38 0.16 1.70 16 10 F -0.15 -3.18 17.27 44.97 0.78 -2.41 16 11 C -0.15 -3.01 8.12 22.31 0.18 -2.83 16 12 C 0.51 17.98 6.83 87.66 0.60 18.58 16 13 O -0.60 -26.22 16.37 -3.05 -0.05 -26.27 16 14 N -0.70 -25.85 5.42 -463.07 -2.51 -28.36 16 15 C 0.18 8.02 5.51 86.38 0.48 8.50 16 16 C 0.01 0.27 1.41 -52.93 -0.07 0.19 16 17 C -0.50 -24.87 8.57 25.60 0.22 -24.65 16 18 H 0.07 3.09 7.82 -2.91 -0.02 3.07 16 19 C 0.03 1.30 5.38 84.66 0.46 1.76 16 20 N -0.91 -50.74 12.90 21.45 0.28 -50.47 16 21 Si 0.95 41.14 29.55 68.60 2.03 43.17 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 25 C -0.16 -7.24 9.40 30.62 0.29 -6.95 16 26 C -0.18 -6.81 9.95 30.62 0.30 -6.51 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.46 6.69 -2.39 -0.02 1.44 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.85 8.09 -2.39 -0.02 1.83 16 31 H 0.08 1.99 7.96 -2.39 -0.02 1.97 16 32 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.14 2.54 8.05 -2.91 -0.02 2.52 16 36 H 0.41 13.36 8.37 -92.71 -0.78 12.59 16 37 H 0.03 1.46 8.11 -2.38 -0.02 1.44 16 38 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.26 13.95 8.32 -92.70 -0.77 13.18 16 40 H 0.07 2.98 8.14 -2.39 -0.02 2.97 16 41 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -63.11 368.16 4.65 -58.47 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.23 Total: 28.30 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 3.90 Total: -22.43 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -2.23 Total: -78.83 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.05 Total: -26.27 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -63.11 4.65 -58.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431164247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.074 kcal (2) G-P(sol) polarization free energy of solvation -63.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds