Wall clock time and date at job start Tue Mar 31 2020 09:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47109 * 2 1 4 4 C 1.53002 * 109.47070 * 119.99821 * 2 1 3 5 5 C 1.50696 * 109.47112 * 295.00178 * 4 2 1 6 6 C 1.38260 * 119.98854 * 90.00040 * 5 4 2 7 7 C 1.38222 * 120.05608 * 179.97438 * 6 5 4 8 8 C 1.38229 * 120.02348 * 359.97438 * 7 6 5 9 9 C 1.38439 * 119.97297 * 0.02562 * 8 7 6 10 10 F 1.35095 * 120.02646 * 180.02562 * 9 8 7 11 11 C 1.38186 * 119.98618 * 269.72692 * 5 4 2 12 12 C 1.50701 * 109.47419 * 240.00118 * 2 1 3 13 13 O 1.21279 * 119.99861 * 271.87820 * 12 2 1 14 14 N 1.34777 * 119.99955 * 91.87228 * 12 2 1 15 15 C 1.46497 * 119.99726 * 185.50015 * 14 12 2 16 16 C 1.53002 * 109.47281 * 176.20654 * 15 14 12 17 17 C 1.50699 * 115.54868 * 64.46871 * 16 15 14 18 18 H 1.08000 * 119.99988 * 266.39208 * 17 16 15 19 19 C 1.37874 * 119.99958 * 86.39085 * 17 16 15 20 20 N 1.31513 * 120.00219 * 178.54221 * 19 17 16 21 21 Si 1.86801 * 119.99931 * 358.53511 * 19 17 16 22 22 H 1.48496 * 109.46807 * 86.86224 * 21 19 17 23 23 H 1.48502 * 109.47171 * 206.85771 * 21 19 17 24 24 H 1.48496 * 109.47486 * 326.85829 * 21 19 17 25 25 C 1.53004 * 117.49687 * 278.80248 * 16 15 14 26 26 C 1.52999 * 117.50230 * 210.14301 * 16 15 14 27 27 H 1.09003 * 109.47083 * 303.82101 * 1 2 3 28 28 H 1.08996 * 109.47193 * 63.82285 * 1 2 3 29 29 H 1.09004 * 109.46715 * 183.82034 * 1 2 3 30 30 H 1.08998 * 109.47023 * 55.00568 * 4 2 1 31 31 H 1.09000 * 109.46836 * 174.99849 * 4 2 1 32 32 H 1.08002 * 119.97604 * 0.02562 * 6 5 4 33 33 H 1.08001 * 119.99064 * 180.02562 * 7 6 5 34 34 H 1.07996 * 120.01135 * 179.97438 * 8 7 6 35 35 H 1.07998 * 120.01247 * 0.02562 * 11 5 4 36 36 H 0.96998 * 119.99986 * 5.50213 * 14 12 2 37 37 H 1.09002 * 109.47434 * 296.20626 * 15 14 12 38 38 H 1.09004 * 109.47204 * 56.20722 * 15 14 12 39 39 H 0.97000 * 120.00588 * 180.02562 * 20 19 17 40 40 H 1.09003 * 117.49709 * 359.97438 * 25 16 15 41 41 H 1.08997 * 117.49554 * 145.02059 * 25 16 15 42 42 H 1.08997 * 117.50012 * 214.98331 * 26 16 15 43 43 H 1.09002 * 117.49376 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 6 0.4352 -0.2052 3.0996 7 6 0.0684 0.5074 4.2257 8 6 0.9074 1.4831 4.7306 9 6 2.1153 1.7466 4.1076 10 9 2.9364 2.6995 4.6004 11 6 2.4838 1.0287 2.9821 12 6 2.0324 -0.7104 -1.2305 13 8 2.2021 -1.9111 -1.2106 14 7 2.2930 -0.0114 -2.3529 15 6 2.6652 -0.7139 -3.5834 16 6 2.8130 0.2965 -4.7228 17 6 3.9244 1.3013 -4.5604 18 1 3.7209 2.2646 -4.1166 19 6 5.2010 0.9906 -4.9784 20 7 6.1649 1.8779 -4.8630 21 14 5.5617 -0.6906 -5.7084 22 1 5.2855 -0.6662 -7.1673 23 1 6.9884 -1.0335 -5.4805 24 1 4.6979 -1.7084 -5.0580 25 6 1.5353 0.7635 -5.4231 26 6 2.4984 -0.1859 -6.1402 27 1 -0.3633 0.5720 0.8538 28 1 -0.3633 0.4533 -0.9222 29 1 -0.3633 -1.0254 0.0685 30 1 1.6054 -1.7198 1.2952 31 1 3.1263 -0.7994 1.2056 32 1 -0.2205 -0.9682 2.7066 33 1 -0.8738 0.3014 4.7118 34 1 0.6204 2.0401 5.6102 35 1 3.4276 1.2307 2.4976 36 1 2.2342 0.9568 -2.3460 37 1 3.6118 -1.2332 -3.4333 38 1 1.8903 -1.4371 -3.8375 39 1 7.0630 1.6595 -5.1574 40 1 0.5895 0.3505 -5.0724 41 1 1.4989 1.7972 -5.7667 42 1 3.0951 0.2235 -6.9553 43 1 2.1865 -1.2233 -6.2611 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431164248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:47 Heat of formation + Delta-G solvation = -50.251069 kcal Electronic energy + Delta-G solvation = -24360.804160 eV Core-core repulsion = 20706.471225 eV Total energy + Delta-G solvation = -3654.332935 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.03958 -39.94685 -38.99998 -37.14559 -34.84617 -33.45965 -32.16426 -31.29945 -30.52442 -27.00616 -26.92948 -25.38344 -23.44461 -22.71466 -21.77503 -21.26256 -19.68792 -18.99482 -17.53325 -16.84274 -16.51592 -16.39545 -16.27850 -15.75063 -15.30388 -15.14074 -14.76729 -14.34525 -14.02986 -13.94995 -13.52781 -13.30760 -13.08159 -12.80094 -12.73635 -12.41361 -12.32446 -12.13339 -12.05368 -11.78215 -11.25598 -11.19222 -11.14643 -10.99224 -10.77445 -10.54425 -10.20052 -9.75398 -9.39944 -9.21621 -9.12364 -8.84658 -8.69652 -8.60354 -8.30999 -6.19054 -4.24171 0.93932 0.98846 3.04955 3.26550 3.33482 3.36566 3.40860 3.69300 4.05292 4.36925 4.47951 4.56461 4.77942 4.82499 4.87756 4.99174 5.01774 5.08856 5.14839 5.17014 5.50405 5.56399 5.62349 5.65089 5.71712 5.77649 5.86902 5.92669 5.98676 6.03381 6.06618 6.09905 6.11516 6.20627 6.36588 6.39034 6.49012 6.67820 6.69053 6.96367 7.03729 7.10686 7.64425 8.13758 8.37326 8.72387 8.80674 9.43988 10.92178 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.003196 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.187201 B = 8757.774937 C = 9452.080454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.092 0.908 4 C -0.067 4.067 5 C -0.044 4.044 6 C -0.126 4.126 7 C -0.091 4.091 8 C -0.162 4.162 9 C 0.100 3.900 10 F -0.141 7.141 11 C -0.150 4.150 12 C 0.510 3.490 13 O -0.558 6.558 14 N -0.700 5.700 15 C 0.154 3.846 16 C -0.016 4.016 17 C -0.492 4.492 18 H 0.078 0.922 19 C 0.081 3.919 20 N -0.894 5.894 21 Si 0.879 3.121 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.258 1.258 25 C -0.177 4.177 26 C -0.194 4.194 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.405 0.595 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.266 0.734 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.837 -2.277 15.457 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.110 0.890 4 C -0.104 4.104 5 C -0.044 4.044 6 C -0.144 4.144 7 C -0.109 4.109 8 C -0.181 4.181 9 C 0.080 3.920 10 F -0.120 7.120 11 C -0.169 4.169 12 C 0.296 3.704 13 O -0.437 6.437 14 N -0.349 5.349 15 C 0.030 3.970 16 C -0.017 4.017 17 C -0.529 4.529 18 H 0.096 0.904 19 C -0.122 4.122 20 N -0.531 5.531 21 Si 0.706 3.294 22 H -0.202 1.202 23 H -0.220 1.220 24 H -0.182 1.182 25 C -0.215 4.215 26 C -0.232 4.232 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.240 0.760 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.478 -3.051 15.421 20.070 hybrid contribution 0.572 -0.092 -0.433 0.723 sum -11.907 -3.143 14.988 19.398 Atomic orbital electron populations 1.21782 0.92708 1.02709 1.02657 1.21210 0.97845 1.00722 0.92703 0.89014 1.20500 1.02257 0.98512 0.89156 1.19767 0.93609 0.95022 0.96033 1.21184 0.96507 1.00694 0.95992 1.20996 0.99213 0.94843 0.95859 1.21126 0.94012 1.01012 1.01959 1.17717 0.89709 0.89512 0.95018 1.91505 1.71565 1.61773 1.87110 1.21153 1.01873 0.97507 0.96391 1.20449 0.77796 0.87702 0.84489 1.90650 1.53743 1.15006 1.84301 1.45927 1.67854 1.11050 1.10083 1.21174 0.98865 0.93560 0.83375 1.19616 0.96150 0.97170 0.88776 1.20178 0.90565 1.00222 1.41959 0.90390 1.24959 0.95946 0.96716 0.94608 1.69879 1.01796 1.34593 1.46828 0.86880 0.77159 0.85346 0.79977 1.20232 1.22040 1.18239 1.22827 0.93306 0.99056 1.06276 1.22968 1.04647 0.97767 0.97795 0.91409 0.91969 0.91927 0.89292 0.90116 0.85179 0.85103 0.85013 0.84485 0.75994 0.91761 0.93770 0.92427 0.90933 0.89404 0.89101 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.62 37.16 0.32 -1.14 16 2 C -0.10 -1.28 2.71 -91.77 -0.25 -1.53 16 3 H 0.09 1.06 8.12 -51.93 -0.42 0.64 16 4 C -0.07 -0.77 4.38 -27.88 -0.12 -0.89 16 5 C -0.04 -0.45 4.71 -104.64 -0.49 -0.94 16 6 C -0.13 -1.09 8.06 -39.58 -0.32 -1.41 16 7 C -0.09 -0.71 10.04 -39.59 -0.40 -1.11 16 8 C -0.16 -1.44 10.03 -39.51 -0.40 -1.84 16 9 C 0.10 1.08 7.30 -39.42 -0.29 0.79 16 10 F -0.14 -1.68 17.27 2.25 0.04 -1.65 16 11 C -0.15 -1.63 9.68 -39.51 -0.38 -2.02 16 12 C 0.51 8.63 6.86 -10.98 -0.08 8.55 16 13 O -0.56 -11.31 16.32 5.56 0.09 -11.22 16 14 N -0.70 -12.60 5.47 -60.29 -0.33 -12.93 16 15 C 0.15 3.18 5.18 -4.04 -0.02 3.16 16 16 C -0.02 -0.34 0.87 -155.66 -0.13 -0.48 16 17 C -0.49 -12.72 9.16 -34.44 -0.32 -13.04 16 18 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 19 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 20 N -0.89 -26.22 13.96 55.43 0.77 -25.44 16 21 Si 0.88 21.24 24.89 -169.99 -4.23 17.01 16 22 H -0.28 -6.52 7.10 56.52 0.40 -6.12 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.26 -6.02 5.75 56.52 0.32 -5.70 16 25 C -0.18 -3.33 9.96 -26.69 -0.27 -3.60 16 26 C -0.19 -3.92 7.66 -26.69 -0.20 -4.13 16 27 H 0.07 0.60 6.52 -51.93 -0.34 0.26 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.04 7.96 -51.93 -0.41 0.63 16 31 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 32 H 0.13 0.93 8.04 -52.49 -0.42 0.51 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.41 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.06 1.49 6.48 -51.93 -0.34 1.15 16 38 H 0.04 0.88 8.10 -51.93 -0.42 0.46 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 42 H 0.09 1.94 7.33 -51.93 -0.38 1.56 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -30.46 358.74 -8.20 -38.66 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.51 Total: 7.65 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -3.44 Total: -17.49 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.44 Total: -38.38 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.23 Total: 17.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.46 -8.20 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431164248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.588 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds