Wall clock time and date at job start Tue Mar 31 2020 08:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46968 * 2 1 4 4 H 1.08993 * 109.47021 * 307.62134 * 3 2 1 5 5 C 1.50700 * 109.46994 * 67.62582 * 3 2 1 6 6 O 1.21281 * 119.99872 * 114.12822 * 5 3 2 7 7 N 1.34771 * 120.00113 * 294.13151 * 5 3 2 8 8 C 1.46501 * 120.00259 * 176.35302 * 7 5 3 9 9 C 1.52997 * 109.46968 * 184.85631 * 8 7 5 10 10 C 1.50706 * 115.54694 * 304.29139 * 9 8 7 11 11 H 1.07998 * 119.99534 * 144.24201 * 10 9 8 12 12 C 1.37869 * 120.00443 * 324.24073 * 10 9 8 13 13 N 1.31518 * 119.99749 * 3.24769 * 12 10 9 14 14 Si 1.86799 * 120.00231 * 183.24270 * 12 10 9 15 15 H 1.48494 * 109.47224 * 94.99868 * 14 12 10 16 16 H 1.48499 * 109.47091 * 214.99716 * 14 12 10 17 17 H 1.48495 * 109.47093 * 334.99690 * 14 12 10 18 18 C 1.53002 * 117.49717 * 158.63136 * 9 8 7 19 19 C 1.52994 * 117.50496 * 89.96807 * 9 8 7 20 20 C 1.50709 * 109.47075 * 187.62485 * 3 2 1 21 21 C 1.38246 * 119.97125 * 299.72776 * 20 3 2 22 22 C 1.38205 * 120.02316 * 179.77106 * 21 20 3 23 23 C 1.38457 * 119.97126 * 0.50247 * 22 21 20 24 24 F 1.35094 * 120.02763 * 179.77325 * 23 22 21 25 25 C 1.38460 * 119.94944 * 359.74830 * 23 22 21 26 26 C 1.38200 * 119.97784 * 359.97438 * 25 23 22 27 27 H 1.08997 * 109.47551 * 300.60908 * 1 2 3 28 28 H 1.08997 * 109.47162 * 60.60979 * 1 2 3 29 29 H 1.09004 * 109.46949 * 180.60824 * 1 2 3 30 30 H 1.09001 * 109.47689 * 240.00090 * 2 1 3 31 31 H 1.08997 * 109.47519 * 119.99906 * 2 1 3 32 32 H 0.97003 * 119.99511 * 356.35189 * 7 5 3 33 33 H 1.09001 * 109.46913 * 304.85159 * 8 7 5 34 34 H 1.08994 * 109.47257 * 64.85314 * 8 7 5 35 35 H 0.96999 * 119.99715 * 185.00447 * 13 12 10 36 36 H 1.08997 * 117.50334 * 359.97438 * 18 9 8 37 37 H 1.08999 * 117.50061 * 145.01899 * 18 9 8 38 38 H 1.08997 * 117.50476 * 214.97708 * 19 9 8 39 39 H 1.09002 * 117.49930 * 359.97363 * 19 9 8 40 40 H 1.07997 * 119.98796 * 0.02562 * 21 20 3 41 41 H 1.07995 * 120.01029 * 180.25116 * 22 21 20 42 42 H 1.08003 * 120.01427 * 179.97438 * 25 23 22 43 43 H 1.07995 * 119.99140 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5696 1.9942 -0.8139 5 6 1.6974 2.0964 1.3139 6 8 2.5816 2.4276 2.0751 7 7 0.4086 2.3131 1.6430 8 6 0.0717 2.8752 2.9533 9 6 -1.4490 2.9066 3.1190 10 6 -2.2048 3.6433 2.0432 11 1 -3.1708 3.2844 1.7198 12 6 -1.6633 4.7752 1.4720 13 7 -0.4600 5.1759 1.8199 14 14 -2.6387 5.7396 0.2040 15 1 -3.3582 6.8522 0.8744 16 1 -1.7128 6.2928 -0.8167 17 1 -3.6205 4.8405 -0.4538 18 6 -2.0031 2.9730 4.5435 19 6 -2.1179 1.6772 3.7368 20 6 3.5352 1.4468 -0.1885 21 6 4.3488 0.8094 0.7296 22 6 5.7198 0.8086 0.5552 23 6 6.2790 1.4553 -0.5339 24 9 7.6193 1.4591 -0.7030 25 6 5.4633 2.0977 -1.4500 26 6 4.0922 2.0923 -1.2767 27 1 -0.3634 0.5232 0.8844 28 1 -0.3633 0.5043 -0.8954 29 1 -0.3633 -1.0276 0.0109 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 -0.2959 2.0969 1.0122 33 1 0.5099 2.2574 3.7372 34 1 0.4662 3.8886 3.0262 35 1 -0.1078 6.0107 1.4735 36 1 -1.2844 2.9939 5.3627 37 1 -2.9147 3.5491 4.7026 38 1 -3.1049 1.4012 3.3656 39 1 -1.4747 0.8456 4.0249 40 1 3.9127 0.3085 1.5812 41 1 6.3550 0.3072 1.2704 42 1 5.8984 2.6028 -2.2997 43 1 3.4558 2.5929 -1.9912 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431169985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:50 Heat of formation + Delta-G solvation = -38.096722 kcal Electronic energy + Delta-G solvation = -25317.440381 eV Core-core repulsion = 21663.634499 eV Total energy + Delta-G solvation = -3653.805882 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.82794 -39.96507 -38.25927 -36.68272 -34.71192 -32.98253 -32.22419 -31.06314 -30.47703 -27.08516 -25.84416 -25.16544 -23.10086 -22.14492 -21.46760 -21.20870 -19.45238 -19.06868 -17.59976 -17.02705 -16.37826 -15.73604 -15.66188 -15.49173 -14.99029 -14.67828 -14.42813 -14.08908 -13.91035 -13.45726 -13.33268 -13.22506 -12.98481 -12.75466 -12.63009 -12.10825 -11.99571 -11.72140 -11.48967 -11.15643 -11.11663 -10.96561 -10.80743 -10.72427 -10.64876 -10.54545 -10.28949 -9.72651 -9.14505 -9.01428 -8.91131 -8.83548 -8.43672 -8.31012 -7.82019 -6.04740 -4.25723 1.22947 1.36262 3.17445 3.27185 3.28049 3.44875 3.64726 4.17024 4.25391 4.33760 4.68529 4.79484 4.91752 4.94106 5.11597 5.20121 5.40831 5.40915 5.42480 5.54047 5.64503 5.72188 5.91274 5.98916 6.00349 6.05105 6.14960 6.19198 6.23055 6.27876 6.34798 6.46241 6.52376 6.58532 6.67189 6.70333 6.86469 6.98143 7.07720 7.22274 7.54401 7.63067 7.95917 8.26613 8.55527 8.78384 9.17491 9.38452 10.83757 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016982 B = 0.004068 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.433882 B = 6880.805320 C = 7411.851059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.106 4.106 3 C -0.073 4.073 4 H 0.100 0.900 5 C 0.509 3.491 6 O -0.556 6.556 7 N -0.681 5.681 8 C 0.160 3.840 9 C 0.037 3.963 10 C -0.497 4.497 11 H 0.061 0.939 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.199 4.199 19 C -0.212 4.212 20 C -0.066 4.066 21 C -0.050 4.050 22 C -0.157 4.157 23 C 0.089 3.911 24 F -0.146 7.146 25 C -0.158 4.158 26 C -0.085 4.085 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.402 0.598 33 H 0.021 0.979 34 H 0.116 0.884 35 H 0.263 0.737 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 -9.210 -6.251 12.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.144 4.144 3 C -0.095 4.095 4 H 0.118 0.882 5 C 0.293 3.707 6 O -0.436 6.436 7 N -0.331 5.331 8 C 0.037 3.963 9 C 0.036 3.964 10 C -0.534 4.534 11 H 0.079 0.921 12 C -0.130 4.130 13 N -0.503 5.503 14 Si 0.719 3.281 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.237 4.237 19 C -0.249 4.249 20 C -0.066 4.066 21 C -0.068 4.068 22 C -0.176 4.176 23 C 0.070 3.930 24 F -0.125 7.125 25 C -0.177 4.177 26 C -0.103 4.103 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.240 0.760 33 H 0.039 0.961 34 H 0.134 0.866 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.192 -8.845 -5.791 12.786 hybrid contribution -0.701 0.661 -0.841 1.279 sum 6.491 -8.184 -6.633 12.373 Atomic orbital electron populations 1.22173 0.94883 1.02479 1.03643 1.21460 0.96606 0.93740 1.02617 1.20424 0.92438 0.98215 0.98390 0.88190 1.20042 0.83473 0.79796 0.87399 1.90642 1.47350 1.53010 1.52608 1.46045 1.06259 1.61613 1.19145 1.21155 0.93782 1.00398 0.80990 1.19236 0.91421 0.94127 0.91624 1.20539 1.03661 1.10408 1.18825 0.92060 1.25003 0.94374 0.97357 0.96278 1.69862 1.14750 1.21458 1.44244 0.86579 0.79881 0.80433 0.81224 1.20581 1.21119 1.19733 1.22939 1.02794 1.00800 0.97205 1.22948 1.01767 0.91689 1.08516 1.19468 0.94477 0.97806 0.94874 1.20815 0.91878 0.96709 0.97432 1.21086 0.96104 1.02550 0.97857 1.17701 0.76847 1.01286 0.97180 1.91464 1.30466 1.95097 1.95465 1.21007 0.93889 1.02538 1.00278 1.20897 0.93959 0.97896 0.97534 0.90309 0.92205 0.92324 0.91122 0.91487 0.76031 0.96123 0.86645 0.92655 0.91494 0.90234 0.90647 0.91389 0.85113 0.85059 0.85066 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.15 37.15 0.34 -1.78 16 2 C -0.11 -1.29 5.09 -26.73 -0.14 -1.43 16 3 C -0.07 -1.08 2.41 -92.92 -0.22 -1.30 16 4 H 0.10 1.38 7.87 -51.93 -0.41 0.97 16 5 C 0.51 9.86 6.94 -10.99 -0.08 9.79 16 6 O -0.56 -12.67 14.88 5.56 0.08 -12.59 16 7 N -0.68 -13.76 4.22 -60.30 -0.25 -14.01 16 8 C 0.16 3.66 4.61 -4.04 -0.02 3.64 16 9 C 0.04 0.83 2.04 -155.66 -0.32 0.51 16 10 C -0.50 -12.15 8.35 -34.44 -0.29 -12.43 16 11 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 12 C 0.07 1.83 5.36 -17.82 -0.10 1.74 16 13 N -0.87 -22.45 10.23 55.43 0.57 -21.88 16 14 Si 0.89 19.46 29.54 -169.99 -5.02 14.44 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 18 C -0.20 -4.23 9.96 -26.69 -0.27 -4.49 16 19 C -0.21 -4.24 9.93 -26.69 -0.27 -4.50 16 20 C -0.07 -0.96 4.45 -104.61 -0.47 -1.42 16 21 C -0.05 -0.73 7.93 -39.59 -0.31 -1.04 16 22 C -0.16 -2.12 10.03 -39.51 -0.40 -2.52 16 23 C 0.09 1.22 7.30 -39.42 -0.29 0.93 16 24 F -0.15 -2.01 17.27 2.25 0.04 -1.97 16 25 C -0.16 -2.02 10.03 -39.51 -0.40 -2.41 16 26 C -0.08 -1.12 9.67 -39.59 -0.38 -1.50 16 27 H 0.08 1.14 4.94 -51.93 -0.26 0.89 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 31 H 0.07 0.83 7.67 -51.93 -0.40 0.43 16 32 H 0.40 7.73 5.40 -40.82 -0.22 7.51 16 33 H 0.02 0.47 8.10 -51.93 -0.42 0.05 16 34 H 0.12 3.06 5.82 -51.93 -0.30 2.75 16 35 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.13 1.88 7.48 -52.49 -0.39 1.49 16 41 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 43 H 0.13 1.46 7.94 -52.49 -0.42 1.04 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -27.58 355.16 -8.99 -36.58 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.17 Total: 12.32 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -3.59 Total: -18.24 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.31 Total: -35.89 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.58 -8.99 -36.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431169985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.521 kcal (2) G-P(sol) polarization free energy of solvation -27.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds