Wall clock time and date at job start Tue Mar 31 2020 09:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47049 * 2 1 4 4 C 1.52995 * 109.47524 * 239.99838 * 2 1 3 5 5 C 1.50710 * 109.47049 * 64.99689 * 4 2 1 6 6 O 1.21281 * 119.99457 * 0.02562 * 5 4 2 7 7 N 1.34773 * 119.99677 * 180.02562 * 5 4 2 8 8 C 1.46497 * 119.99509 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47151 * 178.27372 * 8 7 5 10 10 C 1.50697 * 115.54894 * 65.14145 * 9 8 7 11 11 H 1.08000 * 120.00348 * 265.40609 * 10 9 8 12 12 C 1.37884 * 120.00330 * 85.40790 * 10 9 8 13 13 N 1.31509 * 119.99524 * 353.55335 * 12 10 9 14 14 Si 1.86795 * 120.00064 * 173.55453 * 12 10 9 15 15 H 1.48494 * 109.47672 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46993 * 120.00324 * 14 12 10 17 17 H 1.48504 * 109.46792 * 239.99408 * 14 12 10 18 18 C 1.53002 * 117.49988 * 279.47051 * 9 8 7 19 19 C 1.53005 * 117.50257 * 210.81306 * 9 8 7 20 20 C 1.50698 * 109.47218 * 119.99518 * 2 1 3 21 21 C 1.38272 * 119.99263 * 240.00119 * 20 2 1 22 22 C 1.38218 * 120.05667 * 179.97438 * 21 20 2 23 23 C 1.38228 * 120.02313 * 0.02562 * 22 21 20 24 24 C 1.38440 * 119.97043 * 359.97438 * 23 22 21 25 25 F 1.35108 * 120.01915 * 180.02562 * 24 23 22 26 26 C 1.38182 * 119.98664 * 59.73184 * 20 2 1 27 27 H 1.09004 * 109.47111 * 299.99802 * 1 2 3 28 28 H 1.08996 * 109.47103 * 59.99924 * 1 2 3 29 29 H 1.08997 * 109.47204 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47425 * 184.99895 * 4 2 1 31 31 H 1.09000 * 109.46717 * 305.00235 * 4 2 1 32 32 H 0.96993 * 120.00616 * 0.02562 * 7 5 4 33 33 H 1.09003 * 109.47301 * 298.27264 * 8 7 5 34 34 H 1.08999 * 109.47671 * 58.27389 * 8 7 5 35 35 H 0.96996 * 120.00125 * 185.06167 * 13 12 10 36 36 H 1.09000 * 117.49932 * 0.02562 * 18 9 8 37 37 H 1.09005 * 117.49729 * 145.01416 * 18 9 8 38 38 H 1.08998 * 117.50005 * 214.98157 * 19 9 8 39 39 H 1.09002 * 117.49560 * 359.97100 * 19 9 8 40 40 H 1.08004 * 119.96920 * 0.02562 * 21 20 2 41 41 H 1.07991 * 119.99007 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00989 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.00847 * 359.97438 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6413 0.0570 -2.4766 6 8 1.0116 1.0873 -2.3632 7 7 1.9845 -0.3920 -3.7001 8 6 1.5974 0.3648 -4.8932 9 6 2.1437 -0.3339 -6.1399 10 6 1.5706 -1.6984 -6.4239 11 1 2.0819 -2.5826 -6.0730 12 6 0.3933 -1.8181 -7.1317 13 7 -0.2952 -0.7435 -7.4491 14 14 -0.2235 -3.5065 -7.6396 15 1 0.7266 -4.5442 -7.1648 16 1 -1.5602 -3.7465 -7.0390 17 1 -0.3272 -3.5710 -9.1197 18 6 3.6125 -0.0963 -6.4964 19 6 2.5068 0.5435 -7.3396 20 6 2.0323 -0.7103 1.2305 21 6 2.8272 -0.0381 2.1405 22 6 3.2883 -0.6881 3.2698 23 6 2.9555 -2.0115 3.4905 24 6 2.1596 -2.6855 2.5800 25 9 1.8333 -3.9788 2.7950 26 6 1.6938 -2.0316 1.4518 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1263 -0.7994 -1.2055 31 1 1.6054 -1.7198 -1.2950 32 1 2.4878 -1.2162 -3.7908 33 1 0.5103 0.4176 -4.9532 34 1 2.0072 1.3731 -4.8329 35 1 -1.1588 -0.8312 -7.8819 36 1 4.1897 0.5574 -5.8426 37 1 4.1642 -0.9270 -6.9367 38 1 2.3314 0.1337 -8.3343 39 1 2.3560 1.6185 -7.2409 40 1 3.0874 0.9961 1.9691 41 1 3.9087 -0.1619 3.9801 42 1 3.3155 -2.5190 4.3731 43 1 1.0689 -2.5551 0.7433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431173057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:07 Heat of formation + Delta-G solvation = -53.094660 kcal Electronic energy + Delta-G solvation = -24237.784550 eV Core-core repulsion = 20583.328308 eV Total energy + Delta-G solvation = -3654.456242 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.04889 -39.91955 -38.87563 -36.79282 -34.95914 -33.28872 -32.00248 -30.76846 -30.08988 -28.17343 -25.99837 -25.05397 -23.83416 -22.74441 -21.25714 -20.66362 -19.65264 -19.13937 -17.65694 -16.68599 -16.40292 -16.30074 -15.99632 -15.75015 -15.19766 -14.89827 -14.68436 -14.19694 -14.18602 -13.75872 -13.57957 -13.27705 -13.13317 -12.77282 -12.46897 -12.29804 -12.05035 -11.92872 -11.63615 -11.49004 -11.13336 -11.04678 -10.99189 -10.90664 -10.73290 -10.54326 -10.29642 -9.67254 -9.27580 -9.11991 -8.98684 -8.86108 -8.53275 -8.29854 -8.08841 -6.11025 -4.19782 0.95528 0.99468 3.19501 3.22757 3.32171 3.34108 3.36007 3.83694 4.04822 4.32790 4.48129 4.55994 4.81946 4.93122 4.99955 5.10621 5.16692 5.17068 5.23443 5.35360 5.58340 5.68316 5.71961 5.75113 5.85966 5.89695 5.99992 6.02358 6.04886 6.18123 6.30843 6.41527 6.44036 6.51944 6.55051 6.66552 6.69667 6.87034 7.06605 7.27464 7.40687 7.45964 7.78578 8.28688 8.31090 8.81031 8.87888 9.47368 10.96812 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.003104 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.065013 B = 9018.756724 C = 9798.939073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.035 4.035 3 H 0.090 0.910 4 C -0.136 4.136 5 C 0.504 3.496 6 O -0.555 6.555 7 N -0.703 5.703 8 C 0.163 3.837 9 C 0.028 3.972 10 C -0.501 4.501 11 H 0.060 0.940 12 C 0.074 3.926 13 N -0.874 5.874 14 Si 0.889 3.111 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.211 4.211 19 C -0.148 4.148 20 C -0.041 4.041 21 C -0.127 4.127 22 C -0.090 4.090 23 C -0.163 4.163 24 C 0.099 3.901 25 F -0.142 7.142 26 C -0.149 4.149 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.400 0.600 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.432 -0.524 18.579 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.054 4.054 3 H 0.109 0.891 4 C -0.176 4.176 5 C 0.290 3.710 6 O -0.435 6.435 7 N -0.352 5.352 8 C 0.040 3.960 9 C 0.027 3.973 10 C -0.539 4.539 11 H 0.079 0.921 12 C -0.130 4.130 13 N -0.510 5.510 14 Si 0.717 3.283 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.248 4.248 19 C -0.186 4.186 20 C -0.041 4.041 21 C -0.145 4.145 22 C -0.108 4.108 23 C -0.182 4.182 24 C 0.079 3.921 25 F -0.120 7.120 26 C -0.167 4.167 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.818 0.227 18.472 19.368 hybrid contribution -0.233 -1.620 -0.376 1.679 sum 5.585 -1.392 18.096 18.990 Atomic orbital electron populations 1.21980 0.93348 1.01888 1.03511 1.19914 0.97059 0.99178 0.89243 0.89135 1.21751 1.02759 1.00374 0.92694 1.20423 0.79936 0.85874 0.84788 1.90622 1.40919 1.25173 1.86804 1.46009 1.55971 1.27450 1.05727 1.20977 1.00411 0.91711 0.82868 1.19042 0.90733 0.96017 0.91530 1.20382 1.08111 0.89958 1.35399 0.92144 1.24988 0.96720 0.96407 0.94916 1.69981 1.12546 1.27842 1.40610 0.86585 0.78744 0.84485 0.78484 1.19694 1.21013 1.20934 1.23023 0.93258 1.02938 1.05591 1.22491 1.02337 0.96511 0.97307 1.19867 0.95292 0.92896 0.96093 1.21198 0.98400 1.00572 0.94368 1.20991 0.98848 0.93601 0.97358 1.21119 1.00990 0.95903 1.00206 1.17719 0.99082 0.78961 0.96292 1.91504 1.91145 1.34571 1.94812 1.21063 1.02698 0.95488 0.97498 0.92948 0.89547 0.93115 0.89117 0.88961 0.76618 0.90998 0.94547 0.92876 0.91669 0.90369 0.89837 0.91688 0.85220 0.85106 0.85037 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.74 37.15 0.32 -1.58 16 2 C -0.04 -0.41 2.21 -91.78 -0.20 -0.62 16 3 H 0.09 1.11 7.69 -51.93 -0.40 0.71 16 4 C -0.14 -1.70 4.92 -27.88 -0.14 -1.84 16 5 C 0.50 8.67 7.55 -10.98 -0.08 8.59 16 6 O -0.56 -11.28 13.97 5.56 0.08 -11.21 16 7 N -0.70 -13.01 5.47 -60.29 -0.33 -13.34 16 8 C 0.16 3.61 5.50 -4.04 -0.02 3.59 16 9 C 0.03 0.63 1.38 -155.66 -0.21 0.42 16 10 C -0.50 -12.66 8.63 -34.44 -0.30 -12.96 16 11 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 12 C 0.07 1.93 5.39 -17.82 -0.10 1.84 16 13 N -0.87 -23.97 12.91 55.43 0.72 -23.26 16 14 Si 0.89 20.33 29.55 -169.99 -5.02 15.31 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C -0.21 -4.29 9.96 -26.69 -0.27 -4.56 16 19 C -0.15 -3.34 9.42 -26.69 -0.25 -3.59 16 20 C -0.04 -0.43 4.78 -104.63 -0.50 -0.93 16 21 C -0.13 -1.16 9.67 -39.58 -0.38 -1.54 16 22 C -0.09 -0.73 10.04 -39.59 -0.40 -1.12 16 23 C -0.16 -1.47 10.03 -39.51 -0.40 -1.86 16 24 C 0.10 1.06 7.30 -39.42 -0.29 0.77 16 25 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 26 C -0.15 -1.59 8.74 -39.52 -0.35 -1.94 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.35 5.95 -51.93 -0.31 1.04 16 29 H 0.05 0.60 7.37 -51.93 -0.38 0.22 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 32 H 0.40 6.77 8.36 -40.82 -0.34 6.43 16 33 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 34 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 35 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 38 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 39 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.13 0.99 7.94 -52.48 -0.42 0.57 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.14 1.39 7.16 -52.49 -0.38 1.02 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -28.82 364.15 -8.98 -37.80 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.39 Total: 8.17 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -3.56 Total: -17.34 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.39 Total: -36.60 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.82 -8.98 -37.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431173057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.298 kcal (2) G-P(sol) polarization free energy of solvation -28.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds