Wall clock time and date at job start Tue Mar 31 2020 09:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47049 * 2 1 4 4 C 1.52995 * 109.47524 * 239.99838 * 2 1 3 5 5 C 1.50710 * 109.47049 * 64.99689 * 4 2 1 6 6 O 1.21281 * 119.99457 * 0.02562 * 5 4 2 7 7 N 1.34773 * 119.99677 * 180.02562 * 5 4 2 8 8 C 1.46497 * 119.99509 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47151 * 178.27372 * 8 7 5 10 10 C 1.50697 * 115.54894 * 65.14145 * 9 8 7 11 11 H 1.08000 * 120.00348 * 265.40609 * 10 9 8 12 12 C 1.37884 * 120.00330 * 85.40790 * 10 9 8 13 13 N 1.31509 * 119.99524 * 353.55335 * 12 10 9 14 14 Si 1.86795 * 120.00064 * 173.55453 * 12 10 9 15 15 H 1.48494 * 109.47672 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46993 * 120.00324 * 14 12 10 17 17 H 1.48504 * 109.46792 * 239.99408 * 14 12 10 18 18 C 1.53002 * 117.49988 * 279.47051 * 9 8 7 19 19 C 1.53005 * 117.50257 * 210.81306 * 9 8 7 20 20 C 1.50698 * 109.47218 * 119.99518 * 2 1 3 21 21 C 1.38272 * 119.99263 * 240.00119 * 20 2 1 22 22 C 1.38218 * 120.05667 * 179.97438 * 21 20 2 23 23 C 1.38228 * 120.02313 * 0.02562 * 22 21 20 24 24 C 1.38440 * 119.97043 * 359.97438 * 23 22 21 25 25 F 1.35108 * 120.01915 * 180.02562 * 24 23 22 26 26 C 1.38182 * 119.98664 * 59.73184 * 20 2 1 27 27 H 1.09004 * 109.47111 * 299.99802 * 1 2 3 28 28 H 1.08996 * 109.47103 * 59.99924 * 1 2 3 29 29 H 1.08997 * 109.47204 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47425 * 184.99895 * 4 2 1 31 31 H 1.09000 * 109.46717 * 305.00235 * 4 2 1 32 32 H 0.96993 * 120.00616 * 0.02562 * 7 5 4 33 33 H 1.09003 * 109.47301 * 298.27264 * 8 7 5 34 34 H 1.08999 * 109.47671 * 58.27389 * 8 7 5 35 35 H 0.96996 * 120.00125 * 185.06167 * 13 12 10 36 36 H 1.09000 * 117.49932 * 0.02562 * 18 9 8 37 37 H 1.09005 * 117.49729 * 145.01416 * 18 9 8 38 38 H 1.08998 * 117.50005 * 214.98157 * 19 9 8 39 39 H 1.09002 * 117.49560 * 359.97100 * 19 9 8 40 40 H 1.08004 * 119.96920 * 0.02562 * 21 20 2 41 41 H 1.07991 * 119.99007 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00989 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.00847 * 359.97438 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6413 0.0570 -2.4766 6 8 1.0116 1.0873 -2.3632 7 7 1.9845 -0.3920 -3.7001 8 6 1.5974 0.3648 -4.8932 9 6 2.1437 -0.3339 -6.1399 10 6 1.5706 -1.6984 -6.4239 11 1 2.0819 -2.5826 -6.0730 12 6 0.3933 -1.8181 -7.1317 13 7 -0.2952 -0.7435 -7.4491 14 14 -0.2235 -3.5065 -7.6396 15 1 0.7266 -4.5442 -7.1648 16 1 -1.5602 -3.7465 -7.0390 17 1 -0.3272 -3.5710 -9.1197 18 6 3.6125 -0.0963 -6.4964 19 6 2.5068 0.5435 -7.3396 20 6 2.0323 -0.7103 1.2305 21 6 2.8272 -0.0381 2.1405 22 6 3.2883 -0.6881 3.2698 23 6 2.9555 -2.0115 3.4905 24 6 2.1596 -2.6855 2.5800 25 9 1.8333 -3.9788 2.7950 26 6 1.6938 -2.0316 1.4518 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1263 -0.7994 -1.2055 31 1 1.6054 -1.7198 -1.2950 32 1 2.4878 -1.2162 -3.7908 33 1 0.5103 0.4176 -4.9532 34 1 2.0072 1.3731 -4.8329 35 1 -1.1588 -0.8312 -7.8819 36 1 4.1897 0.5574 -5.8426 37 1 4.1642 -0.9270 -6.9367 38 1 2.3314 0.1337 -8.3343 39 1 2.3560 1.6185 -7.2409 40 1 3.0874 0.9961 1.9691 41 1 3.9087 -0.1619 3.9801 42 1 3.3155 -2.5190 4.3731 43 1 1.0689 -2.5551 0.7433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431173057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:07 Heat of formation + Delta-G solvation = -67.515470 kcal Electronic energy + Delta-G solvation = -24238.409884 eV Core-core repulsion = 20583.328308 eV Total energy + Delta-G solvation = -3655.081575 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.86327 -41.01962 -39.98331 -38.49469 -35.94962 -34.87034 -33.96774 -31.48505 -30.95204 -29.38256 -27.76693 -26.72044 -24.71938 -23.49940 -22.96851 -21.72201 -21.30258 -20.60000 -18.59870 -18.20665 -17.46758 -17.24721 -17.04217 -16.71480 -16.57702 -16.42668 -16.34253 -15.64340 -15.17042 -14.91429 -14.69748 -14.46100 -14.29117 -14.05596 -13.70181 -13.57129 -13.47316 -13.03634 -12.94034 -12.87177 -12.76398 -12.54859 -12.33295 -12.10530 -12.03558 -11.89041 -11.64647 -11.46836 -10.85734 -10.72970 -10.45621 -10.04029 -9.86230 -9.75831 -9.60067 -8.10307 -6.23192 0.22420 0.28976 1.40402 1.44691 1.53531 1.81226 2.39561 2.44878 2.68484 3.18305 3.28179 3.49307 3.67882 3.76527 3.96545 4.11710 4.17061 4.22598 4.28838 4.34060 4.46880 4.52956 4.56714 4.66413 4.70680 4.73878 4.82022 4.93848 4.99828 5.02179 5.09974 5.11928 5.18146 5.25343 5.27767 5.39460 5.43768 5.60162 5.61999 5.64991 5.73657 5.79450 5.98767 6.37127 6.81888 6.87038 7.45660 7.47448 8.97362 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.003104 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.065013 B = 9018.756724 C = 9798.939073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.028 4.028 3 H 0.086 0.914 4 C -0.125 4.125 5 C 0.502 3.498 6 O -0.589 6.589 7 N -0.703 5.703 8 C 0.181 3.819 9 C 0.006 3.994 10 C -0.504 4.504 11 H 0.064 0.936 12 C 0.025 3.975 13 N -0.908 5.908 14 Si 0.948 3.052 15 H -0.261 1.261 16 H -0.288 1.288 17 H -0.286 1.286 18 C -0.176 4.176 19 C -0.162 4.162 20 C -0.048 4.048 21 C -0.127 4.127 22 C -0.084 4.084 23 C -0.161 4.161 24 C 0.077 3.923 25 F -0.152 7.152 26 C -0.157 4.157 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.409 0.591 33 H 0.027 0.973 34 H 0.034 0.966 35 H 0.258 0.742 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.146 0.854 41 H 0.162 0.838 42 H 0.151 0.849 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.482 -1.322 20.590 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.047 4.047 3 H 0.104 0.896 4 C -0.165 4.165 5 C 0.290 3.710 6 O -0.470 6.470 7 N -0.352 5.352 8 C 0.056 3.944 9 C 0.005 3.995 10 C -0.541 4.541 11 H 0.082 0.918 12 C -0.176 4.176 13 N -0.545 5.545 14 Si 0.774 3.226 15 H -0.185 1.185 16 H -0.214 1.214 17 H -0.212 1.212 18 C -0.213 4.213 19 C -0.200 4.200 20 C -0.049 4.049 21 C -0.145 4.145 22 C -0.102 4.102 23 C -0.179 4.179 24 C 0.058 3.942 25 F -0.131 7.131 26 C -0.176 4.176 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.245 0.755 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.163 0.837 41 H 0.180 0.820 42 H 0.168 0.832 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.895 -0.598 20.499 21.975 hybrid contribution -0.853 -1.324 -0.944 1.836 sum 7.042 -1.922 19.555 20.873 Atomic orbital electron populations 1.21917 0.94451 1.01840 1.02287 1.19793 0.96125 0.99073 0.89698 0.89591 1.21764 1.04405 1.00015 0.90286 1.21253 0.78711 0.85593 0.85463 1.90615 1.42187 1.26938 1.87296 1.45927 1.56375 1.27655 1.05240 1.20499 0.97508 0.92149 0.84231 1.19070 0.93080 0.95408 0.91933 1.20703 1.07860 0.91113 1.34452 0.91794 1.25692 0.97272 0.99304 0.95319 1.70105 1.12843 1.29673 1.41918 0.85663 0.78087 0.81102 0.77719 1.18492 1.21386 1.21193 1.23007 0.91817 1.02588 1.03885 1.22431 1.04465 0.96756 0.96334 1.19673 0.96449 0.92778 0.95966 1.21460 0.97548 1.01331 0.94188 1.21339 0.98323 0.93188 0.97316 1.21427 0.99929 0.96327 1.00244 1.17958 1.00300 0.78829 0.97101 1.91474 1.91412 1.35324 1.94917 1.21086 1.03003 0.95737 0.97778 0.91973 0.92852 0.92588 0.86537 0.87670 0.75520 0.95470 0.94724 0.93268 0.89216 0.89609 0.91953 0.91191 0.83654 0.82001 0.83162 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 8.74 71.98 0.63 -3.10 16 2 C -0.03 -0.63 2.21 -11.54 -0.03 -0.65 16 3 H 0.09 2.01 7.69 -2.39 -0.02 1.99 16 4 C -0.13 -2.93 4.92 29.85 0.15 -2.78 16 5 C 0.50 17.08 7.55 87.66 0.66 17.74 16 6 O -0.59 -24.37 13.97 -3.03 -0.04 -24.41 16 7 N -0.70 -25.69 5.47 -463.06 -2.54 -28.22 16 8 C 0.18 8.10 5.50 86.38 0.48 8.58 16 9 C 0.01 0.27 1.38 -52.93 -0.07 0.19 16 10 C -0.50 -25.35 8.63 25.60 0.22 -25.13 16 11 H 0.06 3.11 7.82 -2.91 -0.02 3.08 16 12 C 0.02 1.31 5.39 84.66 0.46 1.76 16 13 N -0.91 -51.13 12.91 21.45 0.28 -50.86 16 14 Si 0.95 41.96 29.55 68.60 2.03 43.99 16 15 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 16 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 18 C -0.18 -6.83 9.96 30.62 0.30 -6.53 16 19 C -0.16 -7.29 9.42 30.62 0.29 -7.00 16 20 C -0.05 -0.91 4.78 -19.87 -0.10 -1.01 16 21 C -0.13 -1.92 9.67 22.27 0.22 -1.71 16 22 C -0.08 -1.05 10.04 22.26 0.22 -0.83 16 23 C -0.16 -2.42 10.03 22.32 0.22 -2.20 16 24 C 0.08 1.53 7.30 22.37 0.16 1.69 16 25 F -0.15 -3.42 17.27 44.97 0.78 -2.64 16 26 C -0.16 -3.13 8.74 22.31 0.20 -2.94 16 27 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.05 1.71 5.95 -2.39 -0.01 1.70 16 29 H 0.06 1.31 7.37 -2.39 -0.02 1.29 16 30 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.11 2.24 7.58 -2.39 -0.02 2.22 16 32 H 0.41 13.32 8.36 -92.71 -0.78 12.54 16 33 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.03 1.54 8.09 -2.39 -0.02 1.52 16 35 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 36 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 38 H 0.06 3.04 8.14 -2.39 -0.02 3.03 16 39 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.15 1.72 7.94 -2.91 -0.02 1.70 16 41 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.13 2.61 7.16 -2.91 -0.02 2.59 16 Total: -1.00 -63.34 364.15 4.75 -58.59 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.24 Total: 27.46 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 4.01 Total: -23.91 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -2.26 Total: -79.08 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.04 Total: -24.41 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -63.34 4.75 -58.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431173057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.930 kcal (2) G-P(sol) polarization free energy of solvation -63.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds