Wall clock time and date at job start Tue Mar 31 2020 09:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46941 * 2 1 4 4 C 1.53005 * 109.47412 * 120.00212 * 2 1 3 5 5 C 1.50699 * 109.46854 * 295.00019 * 4 2 1 6 6 O 1.21278 * 120.00138 * 0.02562 * 5 4 2 7 7 N 1.34782 * 119.99397 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99414 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46871 * 184.79336 * 8 7 5 10 10 C 1.50697 * 115.55322 * 294.82178 * 9 8 7 11 11 H 1.07996 * 120.00132 * 99.47554 * 10 9 8 12 12 C 1.37879 * 119.99948 * 279.20924 * 10 9 8 13 13 N 1.31513 * 120.00007 * 355.31396 * 12 10 9 14 14 Si 1.86797 * 120.00007 * 175.32661 * 12 10 9 15 15 H 1.48495 * 109.47524 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47456 * 119.99723 * 14 12 10 17 17 H 1.48503 * 109.46858 * 239.99145 * 14 12 10 18 18 C 1.53002 * 117.51952 * 80.52342 * 9 8 7 19 19 C 1.52995 * 60.00245 * 107.48140 * 18 9 8 20 20 C 1.50700 * 109.47242 * 240.00157 * 2 1 3 21 21 C 1.38264 * 119.98739 * 299.72815 * 20 2 1 22 22 C 1.38225 * 120.04922 * 179.72321 * 21 20 2 23 23 C 1.38225 * 120.02600 * 0.54302 * 22 21 20 24 24 C 1.38439 * 119.97099 * 359.72894 * 23 22 21 25 25 F 1.35104 * 120.01978 * 180.02562 * 24 23 22 26 26 C 1.38174 * 119.98396 * 119.99460 * 20 2 1 27 27 H 1.08995 * 109.46937 * 299.99302 * 1 2 3 28 28 H 1.08997 * 109.47128 * 59.99834 * 1 2 3 29 29 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46952 * 175.00177 * 4 2 1 31 31 H 1.09001 * 109.46519 * 55.00082 * 4 2 1 32 32 H 0.96990 * 120.00272 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.47436 * 64.79683 * 8 7 5 34 34 H 1.08999 * 109.47678 * 304.79417 * 8 7 5 35 35 H 0.96995 * 120.00738 * 185.00353 * 13 12 10 36 36 H 1.09003 * 117.50235 * 214.97537 * 18 9 8 37 37 H 1.09007 * 117.49782 * 359.97438 * 18 9 8 38 38 H 1.09003 * 117.49823 * 252.51352 * 19 18 9 39 39 H 1.08996 * 117.52003 * 107.48186 * 19 18 9 40 40 H 1.07993 * 119.97364 * 359.97438 * 21 20 2 41 41 H 1.07998 * 119.98864 * 180.27224 * 22 21 20 42 42 H 1.08003 * 120.01215 * 179.70341 * 23 22 21 43 43 H 1.08000 * 120.01688 * 0.02826 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0110 1.0868 2.3633 7 7 1.9846 -0.3921 3.7001 8 6 1.5966 0.3642 4.8933 9 6 2.2070 -0.2916 6.1336 10 6 1.7025 -1.6755 6.4520 11 1 2.2831 -2.5406 6.1676 12 6 0.5024 -1.8370 7.1113 13 7 -0.1571 -0.7846 7.5439 14 14 -0.1866 -3.5507 7.3905 15 1 0.7395 -4.5569 6.8118 16 1 -0.3339 -3.7936 8.8481 17 1 -1.5134 -3.6638 6.7333 18 6 3.6729 0.0153 6.4465 19 6 2.5638 0.6184 7.3107 20 6 2.0324 -0.7104 -1.2305 21 6 1.7028 -2.0357 -1.4462 22 6 2.1582 -2.6869 -2.5773 23 6 2.9529 -2.0168 -3.4884 24 6 3.2881 -0.6914 -3.2705 25 9 4.0643 -0.0354 -4.1606 26 6 2.8266 -0.0385 -2.1398 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1264 -0.7994 1.2055 31 1 1.6054 -1.7199 1.2950 32 1 2.4885 -1.2159 3.7907 33 1 0.5103 0.3697 4.9827 34 1 1.9593 1.3885 4.8082 35 1 -0.9634 -0.9001 8.0704 36 1 4.2724 -0.7838 6.8826 37 1 4.2029 0.6842 5.7684 38 1 2.3640 1.6844 7.2013 39 1 2.4331 0.2164 8.3153 40 1 1.0859 -2.5614 -0.7325 41 1 1.8966 -3.7209 -2.7470 42 1 3.3125 -2.5273 -4.3696 43 1 3.0879 0.9954 -1.9687 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431173058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:10 Heat of formation + Delta-G solvation = -53.448950 kcal Electronic energy + Delta-G solvation = -24186.873186 eV Core-core repulsion = 20532.401581 eV Total energy + Delta-G solvation = -3654.471605 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.07805 -39.93471 -38.88446 -36.79162 -34.93427 -33.29518 -32.01971 -30.99254 -29.90318 -28.18348 -26.02149 -25.05202 -23.68390 -22.98292 -21.23774 -20.62939 -19.66560 -19.15094 -17.48226 -16.87905 -16.37487 -16.32580 -16.01203 -15.77911 -15.20393 -14.90012 -14.72187 -14.44965 -13.93572 -13.77625 -13.56538 -13.28309 -13.06772 -12.82962 -12.50068 -12.32532 -12.09056 -11.88890 -11.65030 -11.53777 -11.14316 -11.04270 -10.99919 -10.86979 -10.78264 -10.54841 -10.28009 -9.63270 -9.26450 -9.15577 -9.05381 -8.84637 -8.55190 -8.29238 -8.09739 -6.11544 -4.21108 0.94612 0.99473 3.18079 3.21598 3.31028 3.32433 3.35673 3.79464 4.06435 4.31610 4.48709 4.54974 4.80133 4.95213 4.98873 5.08465 5.15805 5.17951 5.23909 5.35074 5.58108 5.65614 5.69148 5.72712 5.85782 5.90284 5.99414 6.00837 6.11507 6.12820 6.30171 6.42115 6.45167 6.50440 6.54700 6.66882 6.68936 6.86886 7.07763 7.26992 7.37225 7.47357 7.78000 8.27810 8.30403 8.79982 8.86792 9.46203 10.95980 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.002944 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.562577 B = 9510.001103 C =10088.723785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 H 0.088 0.912 4 C -0.135 4.135 5 C 0.504 3.496 6 O -0.555 6.555 7 N -0.704 5.704 8 C 0.163 3.837 9 C 0.026 3.974 10 C -0.500 4.500 11 H 0.061 0.939 12 C 0.073 3.927 13 N -0.874 5.874 14 Si 0.890 3.110 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.210 4.210 19 C -0.148 4.148 20 C -0.041 4.041 21 C -0.125 4.125 22 C -0.089 4.089 23 C -0.163 4.163 24 C 0.097 3.903 25 F -0.143 7.143 26 C -0.151 4.151 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.401 0.599 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.261 0.739 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.882 -2.673 -17.952 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.055 4.055 3 H 0.107 0.893 4 C -0.175 4.175 5 C 0.289 3.711 6 O -0.435 6.435 7 N -0.352 5.352 8 C 0.040 3.960 9 C 0.026 3.974 10 C -0.538 4.538 11 H 0.079 0.921 12 C -0.131 4.131 13 N -0.510 5.510 14 Si 0.717 3.283 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.247 4.247 19 C -0.186 4.186 20 C -0.041 4.041 21 C -0.143 4.143 22 C -0.107 4.107 23 C -0.182 4.182 24 C 0.078 3.922 25 F -0.121 7.121 26 C -0.170 4.170 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.235 0.765 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.249 -1.849 -17.987 18.574 hybrid contribution 0.001 -1.216 0.183 1.230 sum 4.250 -3.065 -17.804 18.559 Atomic orbital electron populations 1.21971 0.93266 1.01892 1.03495 1.19912 0.97076 0.99220 0.89258 0.89334 1.21740 1.02779 1.00354 0.92610 1.20438 0.79963 0.85877 0.84806 1.90623 1.40917 1.25186 1.86811 1.46022 1.55968 1.27519 1.05687 1.20960 1.00199 0.91937 0.82874 1.19047 0.90698 0.95827 0.91863 1.20398 1.04422 0.89821 1.39161 0.92129 1.24991 0.96406 0.96547 0.95143 1.69988 1.17679 1.28673 1.34640 0.86582 0.79136 0.84643 0.77907 1.19693 1.21024 1.20933 1.22982 0.93232 1.03277 1.05243 1.22494 1.02138 0.96648 0.97302 1.19853 0.94907 0.93879 0.95502 1.21157 1.00759 0.94359 0.97992 1.21014 0.96217 1.00017 0.93458 1.21122 1.01935 0.93297 1.01814 1.17710 0.94329 0.91195 0.88961 1.91495 1.72608 1.81132 1.66893 1.21105 1.00537 1.01282 0.94061 0.89584 0.92980 0.93025 0.89119 0.88858 0.76526 0.91263 0.94310 0.92887 0.90410 0.91694 0.91792 0.89716 0.85103 0.85040 0.85028 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.75 37.16 0.33 -1.52 16 2 C -0.04 -0.42 2.21 -91.77 -0.20 -0.63 16 3 H 0.09 1.13 7.69 -51.93 -0.40 0.73 16 4 C -0.13 -1.65 4.91 -27.88 -0.14 -1.79 16 5 C 0.50 8.58 7.55 -10.98 -0.08 8.50 16 6 O -0.56 -11.25 13.96 5.56 0.08 -11.17 16 7 N -0.70 -12.91 5.48 -60.30 -0.33 -13.24 16 8 C 0.16 3.59 5.51 -4.04 -0.02 3.57 16 9 C 0.03 0.60 1.40 -155.66 -0.22 0.39 16 10 C -0.50 -12.54 8.57 -34.44 -0.30 -12.84 16 11 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 12 C 0.07 1.90 5.44 -17.82 -0.10 1.80 16 13 N -0.87 -23.82 12.85 55.43 0.71 -23.11 16 14 Si 0.89 20.09 29.54 -169.99 -5.02 15.06 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.21 -4.28 9.95 -26.73 -0.27 -4.55 16 19 C -0.15 -3.32 9.39 -26.73 -0.25 -3.58 16 20 C -0.04 -0.43 4.78 -104.64 -0.50 -0.93 16 21 C -0.12 -1.15 8.76 -39.58 -0.35 -1.50 16 22 C -0.09 -0.74 10.04 -39.59 -0.40 -1.13 16 23 C -0.16 -1.46 10.03 -39.51 -0.40 -1.86 16 24 C 0.10 1.02 7.30 -39.42 -0.29 0.74 16 25 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 26 C -0.15 -1.59 9.65 -39.51 -0.38 -1.97 16 27 H 0.09 1.32 5.95 -51.93 -0.31 1.01 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.57 7.40 -51.93 -0.38 0.19 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.01 7.55 -51.93 -0.39 0.62 16 32 H 0.40 6.72 8.33 -40.82 -0.34 6.38 16 33 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 34 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 40 H 0.13 1.07 7.16 -52.49 -0.38 0.69 16 41 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 43 H 0.13 1.31 7.94 -52.49 -0.42 0.89 16 LS Contribution 364.03 15.07 5.49 5.49 Total: -1.00 -28.64 364.03 -8.98 -37.63 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.39 Total: 8.21 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -3.56 Total: -17.29 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.38 Total: -36.35 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.64 -8.98 -37.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431173058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.822 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds