Wall clock time and date at job start Tue Mar 31 2020 08:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47018 * 2 1 4 4 C 1.53007 * 109.47141 * 119.99529 * 2 1 3 5 5 H 1.09000 * 110.65318 * 57.46606 * 4 2 1 6 6 C 1.54597 * 110.73847 * 294.07318 * 4 2 1 7 7 N 1.47912 * 102.62158 * 216.12767 * 6 4 2 8 8 C 1.46903 * 110.99962 * 265.48719 * 7 6 4 9 9 C 1.53003 * 109.46794 * 189.84194 * 8 7 6 10 10 C 1.53001 * 109.46739 * 180.02562 * 9 8 7 11 11 S 1.81005 * 109.47066 * 180.02562 * 10 9 8 12 12 C 1.76202 * 100.00097 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99584 * 359.97438 * 12 11 10 14 14 C 1.38797 * 119.99836 * 179.97438 * 12 11 10 15 15 N 1.31632 * 119.99582 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00228 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47340 * 89.99883 * 16 14 12 18 18 H 1.48501 * 109.46975 * 210.00131 * 16 14 12 19 19 H 1.48501 * 109.46934 * 329.99888 * 16 14 12 20 20 C 1.40040 * 107.87520 * 27.29882 * 7 6 4 21 21 C 1.39400 * 129.95031 * 161.60688 * 20 7 6 22 22 C 1.37909 * 120.20094 * 179.66390 * 21 20 7 23 23 C 1.38309 * 120.26005 * 359.97438 * 22 21 20 24 24 C 1.38307 * 119.88463 * 0.16853 * 23 22 21 25 25 C 1.37917 * 120.07956 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47122 * 64.82796 * 1 2 3 27 27 H 1.09002 * 109.47226 * 184.82546 * 1 2 3 28 28 H 1.08995 * 109.47257 * 304.82043 * 1 2 3 29 29 H 1.08997 * 109.47181 * 239.99912 * 2 1 3 30 30 H 1.08992 * 109.47207 * 172.90288 * 3 2 1 31 31 H 1.09004 * 109.47035 * 292.90007 * 3 2 1 32 32 H 1.09000 * 109.47107 * 52.89783 * 3 2 1 33 33 H 1.09003 * 110.77597 * 97.85272 * 6 4 2 34 34 H 1.08999 * 110.78334 * 334.41286 * 6 4 2 35 35 H 1.09004 * 109.46744 * 69.84418 * 8 7 6 36 36 H 1.08993 * 109.47351 * 309.84816 * 8 7 6 37 37 H 1.08994 * 109.47326 * 60.00598 * 9 8 7 38 38 H 1.08996 * 109.47472 * 299.99938 * 9 8 7 39 39 H 1.09007 * 109.47154 * 299.99854 * 10 9 8 40 40 H 1.08993 * 109.47592 * 60.00189 * 10 9 8 41 41 H 0.97008 * 119.99385 * 180.02562 * 15 14 12 42 42 H 1.08005 * 119.90328 * 359.68034 * 21 20 7 43 43 H 1.07996 * 119.87233 * 180.02562 * 22 21 20 44 44 H 1.07996 * 120.05444 * 180.19493 * 23 22 21 45 45 H 1.07995 * 119.95996 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6510 -1.7385 1.2917 6 6 1.6665 0.0658 2.5265 7 7 2.8431 -0.1519 3.3960 8 6 2.6264 -1.2892 4.3001 9 6 3.7465 -1.3334 5.3415 10 6 3.5212 -2.5184 6.2828 11 16 4.8458 -2.5703 7.5152 12 6 4.3493 -3.9865 8.4386 13 1 3.4554 -4.5255 8.1616 14 6 5.1070 -4.4092 9.5220 15 7 4.7363 -5.4674 10.2115 16 14 6.6527 -3.4763 10.0016 17 1 6.3058 -2.4115 10.9767 18 1 7.6256 -4.4140 10.6176 19 1 7.2556 -2.8620 8.7914 20 6 3.9529 -0.3713 2.5705 21 6 5.3140 -0.2859 2.8591 22 6 6.2487 -0.5549 1.8814 23 6 5.8426 -0.9117 0.6083 24 6 4.4940 -0.9958 0.3133 25 6 3.5553 -0.7248 1.2867 26 1 -0.3633 0.4371 -0.9301 27 1 -0.3634 -1.0240 0.0864 28 1 -0.3633 0.5868 0.8436 29 1 1.8933 -0.5138 -0.8899 30 1 3.1225 1.4452 0.1270 31 1 1.7841 1.9184 -0.9467 32 1 1.5766 1.9917 0.8196 33 1 0.7664 -0.3447 2.9842 34 1 1.5402 1.1255 2.3048 35 1 2.6278 -2.2155 3.7255 36 1 1.6665 -1.1755 4.8036 37 1 3.7452 -0.4072 5.9161 38 1 4.7065 -1.4473 4.8380 39 1 2.5611 -2.4050 6.7864 40 1 3.5228 -3.4445 5.7080 41 1 5.2657 -5.7626 10.9689 42 1 5.6376 -0.0085 3.8515 43 1 7.3018 -0.4876 2.1109 44 1 6.5774 -1.1248 -0.1540 45 1 4.1756 -1.2738 -0.6805 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447382353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:57 Heat of formation + Delta-G solvation = 0.519712 kcal Electronic energy + Delta-G solvation = -22586.414089 eV Core-core repulsion = 19500.495917 eV Total energy + Delta-G solvation = -3085.918172 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.10940 -37.99662 -37.18289 -34.70606 -34.46319 -31.93460 -30.49198 -29.14016 -28.01372 -27.96972 -26.70735 -24.29688 -23.09947 -22.93398 -21.63321 -20.03564 -19.59783 -17.64246 -17.12668 -17.04298 -16.77649 -16.45350 -16.11825 -15.98274 -15.43640 -14.94667 -14.66328 -14.63942 -14.47181 -14.31947 -13.95879 -13.56960 -13.41493 -13.26977 -13.16171 -13.04609 -12.93509 -12.77663 -12.65850 -12.32115 -12.13730 -11.94880 -11.87978 -11.79571 -11.53983 -11.49969 -11.31616 -11.17660 -10.59295 -10.28710 -9.68015 -9.01017 -8.83535 -8.53427 -6.24788 0.40852 0.48999 1.10582 1.31006 1.46679 1.71371 2.23704 2.62541 2.69632 2.84647 2.87495 3.53164 3.71472 3.85712 3.89230 4.01453 4.15530 4.17523 4.21637 4.27956 4.30086 4.36493 4.41680 4.56407 4.60185 4.65683 4.68640 4.72140 4.75714 4.81952 4.87111 5.01980 5.05886 5.08843 5.11048 5.19853 5.22913 5.27643 5.42616 5.46709 5.50840 5.59297 5.63741 5.68368 5.85299 5.99190 6.08415 6.34792 6.90675 8.59809 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.022568 B = 0.003099 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.420266 B = 9033.107477 C = 9791.290931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.146 4.146 4 C -0.069 4.069 5 H 0.083 0.917 6 C 0.050 3.950 7 N -0.502 5.502 8 C 0.072 3.928 9 C -0.088 4.088 10 C -0.068 4.068 11 S -0.217 6.217 12 C -0.522 4.522 13 H 0.050 0.950 14 C 0.038 3.962 15 N -0.923 5.923 16 Si 0.925 3.075 17 H -0.261 1.261 18 H -0.262 1.262 19 H -0.230 1.230 20 C 0.073 3.927 21 C -0.129 4.129 22 C -0.114 4.114 23 C -0.134 4.134 24 C -0.096 4.096 25 C -0.136 4.136 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.035 0.965 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.277 0.723 42 H 0.116 0.884 43 H 0.140 0.860 44 H 0.147 0.853 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 14.069 -24.917 28.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.092 4.092 3 C -0.203 4.203 4 C -0.088 4.088 5 H 0.101 0.899 6 C -0.076 4.076 7 N -0.219 5.219 8 C -0.055 4.055 9 C -0.127 4.127 10 C -0.217 4.217 11 S 0.011 5.989 12 C -0.670 4.670 13 H 0.068 0.932 14 C -0.167 4.167 15 N -0.561 5.561 16 Si 0.746 3.254 17 H -0.185 1.185 18 H -0.186 1.186 19 H -0.153 1.153 20 C -0.023 4.023 21 C -0.148 4.148 22 C -0.132 4.132 23 C -0.153 4.153 24 C -0.115 4.115 25 C -0.138 4.138 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.054 0.946 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.134 0.866 43 H 0.158 0.842 44 H 0.165 0.835 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.582 15.057 -24.233 28.754 hybrid contribution -0.660 -1.812 0.344 1.959 sum -4.242 13.245 -23.890 27.643 Atomic orbital electron populations 1.21852 0.93855 1.02145 1.02532 1.20930 0.96359 0.95987 0.95937 1.21888 1.00546 0.95839 1.02017 1.21384 0.90140 1.00156 0.97110 0.89902 1.23465 0.91987 1.02057 0.90091 1.60173 1.02914 1.39311 1.19505 1.22131 0.99327 0.90793 0.93222 1.21303 0.99343 0.96515 0.95573 1.23036 0.99448 1.01322 0.97852 1.83854 1.38566 1.39642 1.36887 1.22334 1.13812 1.13554 1.17266 0.93176 1.25779 1.00975 0.95289 0.94636 1.70042 1.40934 1.25223 1.19869 0.85714 0.79207 0.79323 0.81115 1.18512 1.18646 1.15306 1.19695 0.91915 0.98275 0.92387 1.20783 0.90971 1.02816 1.00268 1.21205 0.99930 0.98919 0.93162 1.21361 0.95982 1.00868 0.97063 1.20636 0.92275 0.99527 0.99026 1.21147 0.96179 1.01426 0.95085 0.91705 0.92495 0.92187 0.90722 0.93892 0.91772 0.92355 0.88769 0.88167 0.94621 0.88888 0.90834 0.91466 0.91250 0.92045 0.91364 0.86601 0.84218 0.83545 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.96 71.98 0.64 -0.90 16 2 C -0.07 -0.96 2.70 -10.79 -0.03 -0.99 16 3 C -0.15 -2.01 8.55 71.98 0.62 -1.40 16 4 C -0.07 -1.19 2.88 -10.72 -0.03 -1.22 16 5 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 6 C 0.05 0.92 5.57 86.65 0.48 1.40 16 7 N -0.50 -12.21 5.06 -688.63 -3.48 -15.69 16 8 C 0.07 1.89 4.75 86.30 0.41 2.30 16 9 C -0.09 -2.81 5.08 30.60 0.16 -2.65 16 10 C -0.07 -2.67 5.67 71.98 0.41 -2.26 16 11 S -0.22 -10.73 19.41 -56.49 -1.10 -11.83 16 12 C -0.52 -31.35 10.04 67.95 0.68 -30.67 16 13 H 0.05 3.27 8.03 -2.91 -0.02 3.24 16 14 C 0.04 2.26 5.50 84.86 0.47 2.72 16 15 N -0.92 -57.49 13.97 21.65 0.30 -57.18 16 16 Si 0.93 44.76 27.74 68.60 1.90 46.66 16 17 H -0.26 -12.20 7.11 99.48 0.71 -11.50 16 18 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.23 -10.73 6.74 99.48 0.67 -10.06 16 20 C 0.07 1.84 5.28 38.28 0.20 2.05 16 21 C -0.13 -3.31 8.54 22.47 0.19 -3.11 16 22 C -0.11 -2.45 10.02 22.21 0.22 -2.23 16 23 C -0.13 -2.51 10.06 22.30 0.22 -2.29 16 24 C -0.10 -1.83 9.74 22.21 0.22 -1.61 16 25 C -0.14 -2.91 4.39 -19.49 -0.09 -2.99 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.62 7.64 -2.39 -0.02 0.60 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.04 0.74 6.91 -2.39 -0.02 0.73 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.80 6.25 -2.39 -0.01 0.79 16 33 H 0.09 1.48 7.60 -2.39 -0.02 1.46 16 34 H 0.10 1.72 5.63 -2.39 -0.01 1.71 16 35 H 0.04 0.96 8.06 -2.38 -0.02 0.94 16 36 H 0.09 2.18 7.85 -2.39 -0.02 2.16 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.07 2.21 5.58 -2.39 -0.01 2.20 16 39 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.06 2.47 8.14 -2.40 -0.02 2.45 16 41 H 0.28 15.87 8.31 -92.70 -0.77 15.10 16 42 H 0.12 3.12 7.18 -2.91 -0.02 3.10 16 43 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 44 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -67.99 363.19 3.31 -64.68 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.91 Total: 17.22 kcal Atomic # 6 Polarization: -48.63 SS G_CDS: 4.78 Total: -43.85 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -3.18 Total: -72.88 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.90 Total: 46.66 kcal Atomic # 16 Polarization: -10.73 SS G_CDS: -1.10 Total: -11.83 kcal Total: -67.99 3.31 -64.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447382353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.195 kcal (2) G-P(sol) polarization free energy of solvation -67.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds