Wall clock time and date at job start Tue Mar 31 2020 08:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50694 * 119.99651 * 2 1 4 4 N 1.46907 * 109.47141 * 124.12848 * 3 2 1 5 5 C 1.46891 * 110.99883 * 299.16906 * 4 3 2 6 6 C 1.50706 * 109.46781 * 288.12081 * 5 4 3 7 7 H 1.07992 * 119.99987 * 354.71884 * 6 5 4 8 8 C 1.37877 * 119.99922 * 174.72118 * 6 5 4 9 9 N 1.31513 * 120.00272 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99983 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46854 * 89.99859 * 10 8 6 12 12 H 1.48499 * 109.47179 * 209.99905 * 10 8 6 13 13 H 1.48504 * 109.46971 * 329.99787 * 10 8 6 14 14 C 1.46902 * 110.99697 * 63.11749 * 4 3 2 15 15 C 1.52996 * 109.47481 * 66.04652 * 14 4 3 16 16 C 1.52997 * 109.47659 * 179.97438 * 15 14 4 17 17 C 1.50704 * 109.47236 * 180.02562 * 16 15 14 18 18 O 1.21264 * 119.99942 * 359.97438 * 17 16 15 19 19 C 1.47012 * 119.99744 * 179.97438 * 17 16 15 20 20 C 1.39950 * 120.14688 * 359.72786 * 19 17 16 21 21 C 1.37750 * 119.85016 * 179.74328 * 20 19 17 22 22 C 1.38712 * 120.14811 * 0.52608 * 21 20 19 23 23 F 1.35099 * 119.85757 * 179.70096 * 22 21 20 24 24 C 1.38727 * 120.29053 * 359.72410 * 22 21 20 25 25 C 1.37738 * 120.14780 * 0.02562 * 24 22 21 26 26 H 1.08003 * 119.99915 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99631 * 359.97438 * 1 2 3 28 28 H 1.07993 * 119.99886 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47664 * 4.12782 * 3 2 1 30 30 H 1.09002 * 109.47067 * 244.12585 * 3 2 1 31 31 H 1.08996 * 109.47581 * 48.11653 * 5 4 3 32 32 H 1.09003 * 109.47567 * 168.12753 * 5 4 3 33 33 H 0.97001 * 120.00228 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.47104 * 306.05090 * 14 4 3 35 35 H 1.08998 * 109.46948 * 186.05026 * 14 4 3 36 36 H 1.09006 * 109.47028 * 59.99508 * 15 14 4 37 37 H 1.09004 * 109.47163 * 300.00515 * 15 14 4 38 38 H 1.08994 * 109.46837 * 59.99798 * 16 15 14 39 39 H 1.09003 * 109.46690 * 300.00043 * 16 15 14 40 40 H 1.08001 * 120.06919 * 359.97438 * 20 19 17 41 41 H 1.07993 * 119.92148 * 180.25048 * 21 20 19 42 42 H 1.08005 * 119.92117 * 179.97438 * 24 22 21 43 43 H 1.08011 * 120.07467 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9813 1.3407 1.1465 5 6 2.2449 1.2408 2.4136 6 6 1.5053 2.5291 2.6676 7 1 1.6423 3.3702 2.0043 8 6 0.6538 2.6338 3.7470 9 7 0.4866 1.6094 4.5545 10 14 -0.2635 4.2304 4.0615 11 1 -1.5676 4.2001 3.3517 12 1 -0.4970 4.3882 5.5195 13 1 0.5449 5.3722 3.5632 14 6 3.9953 0.2829 1.0421 15 6 4.9016 0.5618 -0.1585 16 6 5.9581 -0.5395 -0.2669 17 6 6.8512 -0.2643 -1.4491 18 8 6.6612 0.7158 -2.1374 19 6 7.9529 -1.1841 -1.7679 20 6 8.1784 -2.3131 -0.9722 21 6 9.2091 -3.1737 -1.2796 22 6 10.0293 -2.9176 -2.3685 23 9 11.0422 -3.7624 -2.6611 24 6 9.8144 -1.7975 -3.1583 25 6 8.7841 -0.9316 -2.8650 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5399 0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3575 2.1322 0.0740 30 1 2.6335 1.3955 -0.9247 31 1 1.5323 0.4181 2.3558 32 1 2.9460 1.0578 3.2279 33 1 -0.1128 1.6829 5.3137 34 1 3.5029 -0.6805 0.9095 35 1 4.5942 0.2626 1.9526 36 1 5.3939 1.5253 -0.0260 37 1 4.3027 0.5822 -1.0690 38 1 5.4661 -1.5031 -0.3992 39 1 6.5570 -0.5593 0.6437 40 1 7.5435 -2.5111 -0.1213 41 1 9.3817 -4.0474 -0.6688 42 1 10.4569 -1.6036 -4.0045 43 1 8.6181 -0.0597 -3.4804 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451057560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:56 Heat of formation + Delta-G solvation = -39.331825 kcal Electronic energy + Delta-G solvation = -23592.198566 eV Core-core repulsion = 19938.339126 eV Total energy + Delta-G solvation = -3653.859441 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.40822 -40.31144 -38.41340 -37.51684 -33.75427 -32.78455 -32.00424 -31.48589 -31.04062 -27.72025 -26.42334 -24.85634 -23.73503 -23.21466 -21.46141 -20.76928 -19.87929 -18.67528 -18.20338 -16.85960 -16.76645 -16.15298 -16.11731 -15.85588 -15.22090 -15.09210 -14.89650 -14.43024 -14.22305 -14.10095 -13.85716 -13.50905 -13.31619 -13.19233 -12.93268 -12.52315 -12.14541 -11.73246 -11.69563 -11.54726 -11.39961 -10.99769 -10.85823 -10.67971 -10.57902 -10.39834 -10.27711 -9.97200 -9.76323 -9.65955 -9.20162 -9.17037 -8.68294 -8.37800 -7.18382 -5.98084 -3.98553 0.14229 0.75054 2.05355 2.91407 3.23689 3.33759 3.40068 3.44791 3.67228 3.74695 4.19845 4.36742 4.45908 4.72424 4.73087 4.85974 4.97082 5.10821 5.34611 5.37323 5.39670 5.41471 5.55014 5.57030 5.62510 5.67891 5.72981 5.78839 5.90344 5.93729 6.10050 6.24086 6.31238 6.41547 6.52013 6.59643 6.75327 7.18688 7.29376 7.34632 7.37971 7.48018 7.86983 8.14591 8.24229 8.60456 9.09728 9.65225 11.12430 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.027877 B = 0.002270 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.173704 B =12329.604836 C =12428.139432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.180 4.180 3 C 0.087 3.913 4 N -0.530 5.530 5 C 0.190 3.810 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.053 3.947 15 C -0.107 4.107 16 C -0.165 4.165 17 C 0.396 3.604 18 O -0.444 6.444 19 C -0.177 4.177 20 C -0.043 4.043 21 C -0.167 4.167 22 C 0.125 3.875 23 F -0.136 7.136 24 C -0.167 4.167 25 C -0.035 4.035 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.005 0.995 32 H 0.021 0.979 33 H 0.260 0.740 34 H 0.025 0.975 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.510 -11.051 -13.446 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.200 4.200 3 C -0.041 4.041 4 N -0.253 5.253 5 C 0.065 3.935 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.076 4.076 15 C -0.145 4.145 16 C -0.203 4.203 17 C 0.273 3.727 18 O -0.319 6.319 19 C -0.179 4.179 20 C -0.061 4.061 21 C -0.185 4.185 22 C 0.106 3.894 23 F -0.114 7.114 24 C -0.186 4.186 25 C -0.053 4.053 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.023 0.977 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.164 0.836 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.610 -10.132 -13.636 23.759 hybrid contribution -0.726 -0.444 0.400 0.940 sum 15.884 -10.577 -13.236 23.224 Atomic orbital electron populations 1.23702 0.96081 1.01097 1.00933 1.23555 0.96671 0.99874 0.99890 1.21286 0.94699 0.94252 0.93822 1.62378 1.14740 1.43985 1.04166 1.19767 0.92212 0.97151 0.84387 1.21147 1.23971 0.98420 1.10437 0.92017 1.24966 0.96945 0.96502 0.96179 1.69956 1.37878 1.30156 1.15956 0.86557 0.80053 0.83964 0.77206 1.20813 1.21355 1.19800 1.22058 0.94474 0.93663 0.97417 1.21440 0.95901 0.97842 0.99277 1.22052 0.98400 1.02189 0.97670 1.22508 0.82299 0.83064 0.84811 1.90546 1.67494 1.26121 1.47711 1.20764 1.00019 0.98501 0.98575 1.21408 0.95287 0.91564 0.97827 1.21160 0.96961 1.02341 0.98081 1.18069 0.86573 0.89138 0.95661 1.91528 1.57464 1.69555 1.92858 1.21152 1.00876 0.94854 1.01728 1.21333 0.91352 0.97882 0.94720 0.89772 0.88484 0.88694 0.89921 0.91814 0.97671 0.96052 0.93079 0.95663 0.91540 0.90671 0.91486 0.88433 0.88133 0.83626 0.83970 0.84108 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 14.32 29.01 0.42 -2.79 16 2 C -0.18 -3.26 7.45 -36.03 -0.27 -3.53 16 3 C 0.09 1.69 5.46 -4.97 -0.03 1.66 16 4 N -0.53 -11.20 4.66 -237.52 -1.11 -12.30 16 5 C 0.19 4.87 4.59 -4.98 -0.02 4.84 16 6 C -0.50 -14.02 8.51 -34.44 -0.29 -14.32 16 7 H 0.06 1.73 7.67 -52.49 -0.40 1.33 16 8 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 10 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.05 0.88 4.79 -3.83 -0.02 0.86 16 15 C -0.11 -1.50 4.43 -26.73 -0.12 -1.62 16 16 C -0.17 -1.66 4.31 -27.88 -0.12 -1.78 16 17 C 0.40 4.34 7.11 -30.75 -0.22 4.12 16 18 O -0.44 -6.35 15.97 5.57 0.09 -6.26 16 19 C -0.18 -1.59 5.87 -105.06 -0.62 -2.21 16 20 C -0.04 -0.30 9.47 -39.12 -0.37 -0.67 16 21 C -0.17 -1.15 10.01 -39.58 -0.40 -1.54 16 22 C 0.12 0.99 7.31 -39.23 -0.29 0.70 16 23 F -0.14 -1.17 17.26 2.25 0.04 -1.13 16 24 C -0.17 -1.25 10.01 -39.58 -0.40 -1.65 16 25 C -0.03 -0.30 9.59 -39.13 -0.38 -0.67 16 26 H 0.08 1.34 8.06 -52.48 -0.42 0.91 16 27 H 0.10 1.78 7.84 -52.49 -0.41 1.37 16 28 H 0.10 1.59 6.76 -52.49 -0.36 1.24 16 29 H 0.08 1.75 7.02 -51.93 -0.36 1.38 16 30 H 0.06 1.10 6.33 -51.93 -0.33 0.77 16 31 H 0.01 0.15 6.75 -51.93 -0.35 -0.20 16 32 H 0.02 0.59 7.81 -51.93 -0.41 0.18 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.03 0.41 6.29 -51.93 -0.33 0.08 16 35 H 0.07 1.11 7.86 -51.93 -0.41 0.71 16 36 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 37 H 0.07 0.99 6.45 -51.93 -0.33 0.65 16 38 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 40 H 0.15 0.70 7.05 -52.49 -0.37 0.33 16 41 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 43 H 0.14 1.18 7.65 -52.48 -0.40 0.78 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -31.79 362.94 -9.13 -40.91 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.12 Total: -0.37 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -3.21 Total: -17.13 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: -0.37 Total: -38.22 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: 0.09 Total: -6.26 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.79 -9.13 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451057560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.583 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds