Wall clock time and date at job start Tue Mar 31 2020 09:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76203 * 103.00053 * 2 1 4 4 C 1.38991 * 120.07940 * 359.97438 * 3 2 1 5 5 C 1.38065 * 119.92100 * 179.97438 * 4 3 2 6 6 C 1.38323 * 120.07801 * 0.02562 * 5 4 3 7 7 C 1.38273 * 120.16139 * 0.02562 * 6 5 4 8 8 C 1.38106 * 120.08462 * 359.96322 * 7 6 5 9 9 C 1.50693 * 120.04444 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47426 * 219.99883 * 9 8 7 11 11 C 1.52998 * 109.47397 * 99.99603 * 9 8 7 12 12 N 1.46897 * 109.47284 * 339.99916 * 9 8 7 13 13 C 1.46904 * 111.00238 * 205.00201 * 12 9 8 14 14 H 1.08999 * 110.43347 * 325.69580 * 13 12 9 15 15 C 1.54263 * 110.48750 * 88.23894 * 13 12 9 16 16 C 1.54087 * 106.49199 * 142.19553 * 15 13 12 17 17 C 1.54258 * 106.62395 * 0.17252 * 16 15 13 18 18 H 1.09001 * 110.48591 * 94.95757 * 17 16 15 19 19 C 1.50695 * 110.60232 * 217.54433 * 17 16 15 20 20 H 1.07997 * 120.00186 * 114.84103 * 19 17 16 21 21 C 1.37887 * 119.99847 * 294.84132 * 19 17 16 22 22 N 1.31509 * 119.99874 * 179.97438 * 21 19 17 23 23 Si 1.86795 * 119.99881 * 359.97438 * 21 19 17 24 24 H 1.48500 * 109.47371 * 90.00134 * 23 21 19 25 25 H 1.48498 * 109.47125 * 209.99678 * 23 21 19 26 26 H 1.48504 * 109.47187 * 329.99931 * 23 21 19 27 27 C 1.54889 * 110.48415 * 203.15886 * 13 12 9 28 28 H 1.09000 * 109.47366 * 300.00281 * 1 2 3 29 29 H 1.08997 * 109.46930 * 59.99925 * 1 2 3 30 30 H 1.08995 * 109.47133 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.03991 * 0.25724 * 4 3 2 32 32 H 1.08004 * 119.95796 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.91736 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.96046 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.46948 * 60.00289 * 11 9 8 36 36 H 1.08994 * 109.47413 * 179.97438 * 11 9 8 37 37 H 1.08995 * 109.47383 * 300.00533 * 11 9 8 38 38 H 1.00905 * 110.99915 * 328.95704 * 12 9 8 39 39 H 1.08992 * 110.03222 * 261.57465 * 15 13 12 40 40 H 1.09008 * 110.02947 * 23.00484 * 15 13 12 41 41 H 1.09006 * 110.11187 * 240.82830 * 16 15 13 42 42 H 1.09000 * 109.96441 * 119.44135 * 16 15 13 43 43 H 0.96994 * 120.00169 * 179.97438 * 22 21 19 44 44 H 1.08998 * 110.75555 * 321.68576 * 27 13 12 45 45 H 1.08990 * 110.76015 * 84.87773 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1952 2.6662 -0.0005 5 6 1.5095 4.0106 0.0000 6 6 2.8328 4.4131 0.0005 7 6 3.8454 3.4715 0.0000 8 6 3.5386 2.1250 -0.0003 9 6 4.6429 1.0996 -0.0003 10 1 4.3736 0.2755 -0.6611 11 6 4.8460 0.5688 1.4202 12 7 5.8874 1.7201 -0.4737 13 6 6.7924 0.7146 -1.0464 14 1 6.6982 -0.2306 -0.5119 15 6 6.4991 0.5172 -2.5480 16 6 7.8625 0.3155 -3.2371 17 6 8.9328 0.3933 -2.1291 18 1 9.1849 -0.6050 -1.7713 19 6 10.1659 1.0989 -2.6316 20 1 10.4580 2.0465 -2.2037 21 6 10.9213 0.5347 -3.6377 22 7 11.9972 1.1507 -4.0765 23 14 10.4166 -1.1047 -4.3772 24 1 9.5095 -0.8697 -5.5293 25 1 11.6256 -1.8324 -4.8397 26 1 9.7133 -1.9153 -3.3507 27 6 8.2569 1.2173 -1.0051 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.1617 2.3526 0.0032 32 1 0.7211 4.7488 -0.0008 33 1 3.0758 5.4654 0.0005 34 1 4.8776 3.7895 0.0000 35 1 3.9226 0.1082 1.7715 36 1 5.6444 -0.1732 1.4201 37 1 5.1153 1.3927 2.0809 38 1 5.6952 2.4543 -1.1387 39 1 5.8710 -0.3616 -2.6934 40 1 6.0046 1.4011 -2.9512 41 1 8.0299 1.1012 -3.9739 42 1 7.8947 -0.6614 -3.7196 43 1 12.5288 0.7536 -4.7840 44 1 8.3056 2.2836 -1.2253 45 1 8.7117 1.0028 -0.0381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453297897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:14:13 Heat of formation + Delta-G solvation = -1.766317 kcal Electronic energy + Delta-G solvation = -22743.527789 eV Core-core repulsion = 19657.510488 eV Total energy + Delta-G solvation = -3086.017302 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65427 -39.35473 -36.68406 -34.50075 -32.41090 -32.14748 -30.22147 -29.86267 -29.58318 -28.26001 -25.31572 -24.26398 -23.66688 -21.56527 -21.19448 -20.81665 -18.82468 -18.46922 -17.46285 -16.89812 -16.60509 -16.26583 -15.67366 -15.47212 -15.27054 -15.01560 -14.88096 -14.73924 -14.50613 -14.17425 -14.01066 -13.76123 -13.40723 -13.34571 -13.10142 -13.01749 -12.83315 -12.60594 -12.37979 -12.12639 -12.03089 -11.92647 -11.71519 -11.53358 -11.48011 -11.18786 -10.96633 -10.95236 -10.70247 -10.64719 -9.77030 -9.28527 -8.35744 -8.27191 -6.29554 0.26030 0.39871 0.60682 1.32995 1.35703 1.46347 1.52611 2.35663 2.74208 3.07335 3.14114 3.66902 3.91695 3.94458 3.99250 4.11485 4.16262 4.26392 4.27908 4.34066 4.44943 4.47902 4.57607 4.60899 4.71930 4.78567 4.82992 4.86539 4.90323 4.91421 5.00751 5.03548 5.08392 5.09728 5.22186 5.28658 5.35727 5.36544 5.50492 5.54498 5.59208 5.67407 5.83208 5.98881 6.20304 6.36161 6.48149 6.77604 7.35506 8.89988 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.022561 B = 0.003276 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.783250 B = 8543.772674 C = 9099.698373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.147 6.147 3 C -0.093 4.093 4 C -0.139 4.139 5 C -0.106 4.106 6 C -0.127 4.127 7 C -0.106 4.106 8 C -0.081 4.081 9 C 0.127 3.873 10 H 0.051 0.949 11 C -0.129 4.129 12 N -0.674 5.674 13 C 0.095 3.905 14 H 0.083 0.917 15 C -0.137 4.137 16 C -0.124 4.124 17 C 0.004 3.996 18 H 0.028 0.972 19 C -0.509 4.509 20 H 0.031 0.969 21 C 0.010 3.990 22 N -0.954 5.954 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.294 1.294 26 H -0.245 1.245 27 C -0.082 4.082 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.343 0.657 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.042 0.958 43 H 0.264 0.736 44 H 0.050 0.950 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.001 0.332 9.841 30.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.095 5.905 3 C -0.206 4.206 4 C -0.162 4.162 5 C -0.126 4.126 6 C -0.147 4.147 7 C -0.126 4.126 8 C -0.087 4.087 9 C 0.017 3.983 10 H 0.069 0.931 11 C -0.187 4.187 12 N -0.305 5.305 13 C -0.015 4.015 14 H 0.101 0.899 15 C -0.176 4.176 16 C -0.163 4.163 17 C -0.015 4.015 18 H 0.047 0.953 19 C -0.548 4.548 20 H 0.050 0.950 21 C -0.186 4.186 22 N -0.595 5.595 23 Si 0.766 3.234 24 H -0.192 1.192 25 H -0.221 1.221 26 H -0.169 1.169 27 C -0.120 4.120 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.140 0.860 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.164 0.836 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.960 -0.767 10.356 29.826 hybrid contribution -0.516 0.483 -1.566 1.718 sum -28.475 -0.284 8.789 29.802 Atomic orbital electron populations 1.23795 0.92426 1.08271 1.06406 1.85765 1.09185 1.03203 1.92317 1.21694 0.95971 0.97129 1.05786 1.21409 0.98616 0.93314 1.02885 1.21390 0.97145 0.95606 0.98449 1.21496 0.92784 1.00492 0.99969 1.21206 1.00707 0.91851 0.98790 1.19660 0.92194 0.94968 1.01888 1.20344 0.86757 0.93709 0.97473 0.93103 1.21720 1.01630 1.00755 0.94580 1.60758 1.13550 1.12624 1.43616 1.22360 0.92316 0.94654 0.92220 0.89859 1.22796 0.96552 1.01545 0.96753 1.22439 0.95457 0.99395 0.98982 1.19942 0.92487 0.95719 0.93402 0.95346 1.21362 1.08716 1.06203 1.18473 0.95023 1.25879 0.94583 1.01060 0.97118 1.70059 1.18027 1.41301 1.30112 0.85892 0.77457 0.80339 0.79665 1.19240 1.22058 1.16861 1.22206 0.93407 0.99033 0.97386 0.88730 0.89064 0.86044 0.83940 0.83213 0.83878 0.84757 0.91372 0.92590 0.92533 0.83623 0.91396 0.91785 0.93577 0.93952 0.92703 0.93075 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.15 113.37 1.04 -0.37 16 2 S -0.15 -2.74 19.95 -56.49 -1.13 -3.87 16 3 C -0.09 -1.92 6.11 22.62 0.14 -1.78 16 4 C -0.14 -2.31 9.36 22.41 0.21 -2.10 16 5 C -0.11 -1.62 10.04 22.25 0.22 -1.40 16 6 C -0.13 -2.22 10.04 22.30 0.22 -1.99 16 7 C -0.11 -2.29 8.87 22.25 0.20 -2.09 16 8 C -0.08 -1.88 5.01 -19.73 -0.10 -1.98 16 9 C 0.13 3.17 2.12 44.17 0.09 3.26 16 10 H 0.05 1.36 6.91 -2.39 -0.02 1.34 16 11 C -0.13 -3.08 9.31 71.98 0.67 -2.41 16 12 N -0.67 -18.77 5.45 -467.83 -2.55 -21.32 16 13 C 0.09 3.04 2.93 45.99 0.13 3.17 16 14 H 0.08 2.59 7.20 -2.39 -0.02 2.57 16 15 C -0.14 -4.52 6.43 31.39 0.20 -4.32 16 16 C -0.12 -5.20 4.89 31.39 0.15 -5.05 16 17 C 0.00 0.18 2.27 -10.47 -0.02 0.15 16 18 H 0.03 1.35 7.06 -2.39 -0.02 1.33 16 19 C -0.51 -29.68 8.95 25.60 0.23 -29.45 16 20 H 0.03 2.04 8.01 -2.91 -0.02 2.02 16 21 C 0.01 0.59 5.46 84.66 0.46 1.05 16 22 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 23 Si 0.94 45.55 24.88 68.60 1.71 47.26 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.24 -10.99 6.41 99.48 0.64 -10.35 16 27 C -0.08 -3.28 5.97 31.89 0.19 -3.09 16 28 H 0.09 0.75 7.75 -2.39 -0.02 0.73 16 29 H 0.09 0.78 7.75 -2.39 -0.02 0.76 16 30 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.14 1.65 5.88 -2.91 -0.02 1.63 16 32 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.13 2.97 6.70 -2.91 -0.02 2.95 16 35 H 0.07 1.50 7.11 -2.38 -0.02 1.49 16 36 H 0.06 1.36 7.47 -2.39 -0.02 1.35 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.34 9.39 6.35 -89.69 -0.57 8.82 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.06 1.99 7.55 -2.38 -0.02 1.98 16 41 H 0.05 2.09 7.84 -2.38 -0.02 2.07 16 42 H 0.04 1.72 6.05 -2.39 -0.01 1.71 16 43 H 0.26 15.83 8.31 -92.71 -0.77 15.05 16 44 H 0.05 2.16 8.05 -2.39 -0.02 2.14 16 45 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -67.65 356.46 2.71 -64.95 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.33 Total: 22.09 kcal Atomic # 6 Polarization: -52.43 SS G_CDS: 4.04 Total: -48.39 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -2.25 Total: -82.04 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.71 Total: 47.26 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -1.13 Total: -3.87 kcal Total: -67.65 2.71 -64.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453297897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.182 kcal (2) G-P(sol) polarization free energy of solvation -67.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds