Wall clock time and date at job start Tue Mar 31 2020 09:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76199 * 102.99780 * 2 1 4 4 C 1.38998 * 120.08306 * 359.97438 * 3 2 1 5 5 C 1.38059 * 119.92044 * 180.02562 * 4 3 2 6 6 C 1.38322 * 120.08111 * 0.02562 * 5 4 3 7 7 C 1.38291 * 120.16150 * 359.70622 * 6 5 4 8 8 C 1.38108 * 120.07534 * 0.55027 * 7 6 5 9 9 C 1.50699 * 120.03745 * 179.74671 * 8 7 6 10 10 H 1.09002 * 109.46959 * 144.72359 * 9 8 7 11 11 C 1.52997 * 109.47078 * 264.72270 * 9 8 7 12 12 N 1.46899 * 109.47244 * 24.72480 * 9 8 7 13 13 C 1.46894 * 111.00220 * 154.99886 * 12 9 8 14 14 H 1.09005 * 110.43314 * 327.54364 * 13 12 9 15 15 C 1.54272 * 110.48576 * 90.22557 * 13 12 9 16 16 C 1.53869 * 106.59814 * 142.29091 * 15 13 12 17 17 C 1.54270 * 106.60196 * 359.97438 * 16 15 13 18 18 H 1.08998 * 110.48444 * 95.07146 * 17 16 15 19 19 C 1.50699 * 110.60086 * 217.65929 * 17 16 15 20 20 H 1.07998 * 119.99802 * 114.83992 * 19 17 16 21 21 C 1.37875 * 119.99616 * 294.83890 * 19 17 16 22 22 N 1.31517 * 120.00531 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 119.99736 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47069 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47547 * 119.99819 * 23 21 19 26 26 H 1.48507 * 109.47201 * 240.00022 * 23 21 19 27 27 C 1.54887 * 104.19269 * 336.39245 * 17 16 15 28 28 H 1.09005 * 109.47255 * 299.99930 * 1 2 3 29 29 H 1.08995 * 109.47328 * 60.00088 * 1 2 3 30 30 H 1.09005 * 109.47242 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.03561 * 359.97438 * 4 3 2 32 32 H 1.07993 * 119.96085 * 179.97438 * 5 4 3 33 33 H 1.07994 * 119.91923 * 179.97438 * 6 5 4 34 34 H 1.07991 * 119.96088 * 180.27616 * 7 6 5 35 35 H 1.08998 * 109.47533 * 179.97438 * 11 9 8 36 36 H 1.08996 * 109.47853 * 300.00179 * 11 9 8 37 37 H 1.09002 * 109.47153 * 60.00207 * 11 9 8 38 38 H 1.00900 * 110.99934 * 278.95393 * 12 9 8 39 39 H 1.09005 * 110.02737 * 261.57380 * 15 13 12 40 40 H 1.08994 * 110.03513 * 23.00330 * 15 13 12 41 41 H 1.09001 * 110.03312 * 240.71662 * 16 15 13 42 42 H 1.09004 * 110.07563 * 119.31012 * 16 15 13 43 43 H 0.97003 * 119.99814 * 180.02562 * 22 21 19 44 44 H 1.08999 * 110.75930 * 279.62477 * 27 17 16 45 45 H 1.09000 * 110.91372 * 156.32882 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7168 0.0000 4 6 1.1950 2.6662 -0.0005 5 6 1.5094 4.0106 -0.0011 6 6 2.8327 4.4132 -0.0016 7 6 3.8454 3.4715 0.0045 8 6 3.5385 2.1250 -0.0003 9 6 4.6428 1.0995 0.0006 10 1 4.3362 0.2359 0.5907 11 6 4.9312 0.6593 -1.4360 12 7 5.8557 1.6866 0.5857 13 6 6.7268 0.6452 1.1466 14 1 6.1311 -0.1816 1.5333 15 6 7.7240 0.1441 0.0814 16 6 9.0555 -0.1081 0.8100 17 6 8.8214 0.2492 2.2924 18 1 8.5656 -0.6429 2.8640 19 6 10.0402 0.9164 2.8759 20 1 9.9893 1.9452 3.2004 21 6 11.2201 0.2133 2.9955 22 7 11.2822 -1.0395 2.6000 23 14 12.7307 1.0400 3.7195 24 1 12.4012 2.4415 4.0838 25 1 13.1655 0.3020 4.9325 26 1 13.8265 1.0342 2.7172 27 6 7.6266 1.2344 2.2615 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.1616 2.3526 -0.0014 32 1 0.7211 4.7488 -0.0019 33 1 3.0756 5.4654 -0.0024 34 1 4.8775 3.7894 0.0086 35 1 5.7302 -0.0820 -1.4354 36 1 4.0313 0.2237 -1.8702 37 1 5.2378 1.5230 -2.0260 38 1 6.3508 2.2452 -0.0932 39 1 7.3606 -0.7822 -0.3637 40 1 7.8583 0.9021 -0.6903 41 1 9.8361 0.5276 0.3920 42 1 9.3394 -1.1565 0.7186 43 1 12.1123 -1.5342 2.6845 44 1 7.9604 2.2382 1.9989 45 1 7.1028 1.2408 3.2173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453297905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:14:16 Heat of formation + Delta-G solvation = 8.509807 kcal Electronic energy + Delta-G solvation = -22623.870387 eV Core-core repulsion = 19538.298692 eV Total energy + Delta-G solvation = -3085.571696 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.58867 -37.87279 -35.28482 -32.50158 -31.39255 -30.75508 -29.09904 -28.77432 -27.99230 -26.05102 -23.97185 -23.21306 -22.71449 -20.56923 -19.58553 -18.99047 -17.67592 -16.35068 -16.29673 -15.56592 -15.23051 -14.60154 -14.45374 -14.36139 -14.15807 -14.04512 -13.66938 -13.52810 -13.22581 -12.79363 -12.65684 -12.42973 -12.24610 -12.14153 -11.74165 -11.56121 -11.24495 -11.11916 -10.99874 -10.93297 -10.58223 -10.44511 -10.21324 -10.02723 -9.78894 -9.74692 -9.49060 -9.07477 -8.81410 -8.65818 -8.32348 -7.98427 -7.50065 -5.94916 -3.96754 1.15186 1.31684 1.37741 2.26142 3.33239 3.41359 3.45639 3.63603 4.36425 4.50605 4.72420 4.77114 4.78019 4.82508 4.98221 5.18675 5.30036 5.32198 5.36066 5.37351 5.45280 5.61991 5.67603 5.72136 5.74466 5.92537 5.93255 6.00088 6.16459 6.23797 6.28895 6.42604 6.49141 6.55416 6.73008 6.80447 6.85835 6.92138 7.09999 7.21335 7.40896 7.57059 7.73982 7.77404 7.97524 8.10013 8.54834 9.07165 9.67007 11.14992 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024528 B = 0.002991 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.269034 B = 9359.857450 C = 9924.904744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.110 6.110 3 C -0.087 4.087 4 C -0.136 4.136 5 C -0.111 4.111 6 C -0.126 4.126 7 C -0.079 4.079 8 C -0.043 4.043 9 C 0.120 3.880 10 H 0.090 0.910 11 C -0.178 4.178 12 N -0.675 5.675 13 C 0.082 3.918 14 H 0.071 0.929 15 C -0.150 4.150 16 C -0.095 4.095 17 C 0.047 3.953 18 H 0.029 0.971 19 C -0.509 4.509 20 H 0.056 0.944 21 C 0.060 3.940 22 N -0.891 5.891 23 Si 0.887 3.113 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.286 1.286 27 C -0.099 4.099 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.134 0.866 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.339 0.661 39 H 0.044 0.956 40 H 0.048 0.952 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.258 0.742 44 H 0.058 0.942 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.772 5.426 -8.741 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.132 5.868 3 C -0.200 4.200 4 C -0.160 4.160 5 C -0.131 4.131 6 C -0.146 4.146 7 C -0.099 4.099 8 C -0.049 4.049 9 C 0.009 3.991 10 H 0.108 0.892 11 C -0.237 4.237 12 N -0.304 5.304 13 C -0.027 4.027 14 H 0.090 0.910 15 C -0.189 4.189 16 C -0.134 4.134 17 C 0.028 3.972 18 H 0.047 0.953 19 C -0.547 4.547 20 H 0.074 0.926 21 C -0.141 4.141 22 N -0.530 5.530 23 Si 0.715 3.285 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.212 1.212 27 C -0.137 4.137 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.124 0.876 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.158 0.842 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -21.322 4.342 -8.143 23.233 hybrid contribution 0.353 1.085 -0.476 1.236 sum -20.968 5.426 -8.619 23.311 Atomic orbital electron populations 1.23700 0.95973 1.06868 1.05382 1.85628 1.05221 1.03460 1.92475 1.21554 0.96051 0.96308 1.06076 1.21032 0.97732 0.93263 1.03990 1.20963 0.96641 0.95080 1.00396 1.21208 0.92771 0.99643 1.01022 1.21002 0.99917 0.91644 0.97317 1.19578 0.91551 0.94977 0.98797 1.20475 0.89616 0.94429 0.94587 0.89185 1.22549 1.02522 1.01922 0.96741 1.60748 1.07420 1.23768 1.38469 1.22624 0.92271 0.92247 0.95542 0.91032 1.22987 0.98877 0.99216 0.97830 1.22040 0.92916 1.00619 0.97803 1.19451 0.91782 0.93861 0.92125 0.95309 1.21211 0.94991 0.98085 1.40412 0.92623 1.24992 0.98746 0.94830 0.95529 1.69987 1.26508 1.08800 1.47687 0.86617 0.83293 0.79737 0.78827 1.19789 1.21141 1.21193 1.22532 0.95962 0.99862 0.95326 0.89928 0.89989 0.87588 0.86275 0.86191 0.85994 0.84856 0.91402 0.91849 0.92597 0.84195 0.93705 0.93342 0.93203 0.92996 0.93271 0.92347 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.15 101.05 0.92 -0.15 16 2 S -0.11 -1.20 20.47 -107.50 -2.20 -3.41 16 3 C -0.09 -1.05 6.11 -39.03 -0.24 -1.29 16 4 C -0.14 -1.43 9.36 -39.37 -0.37 -1.80 16 5 C -0.11 -1.10 10.04 -39.62 -0.40 -1.50 16 6 C -0.13 -1.33 10.04 -39.53 -0.40 -1.73 16 7 C -0.08 -0.96 9.32 -39.61 -0.37 -1.33 16 8 C -0.04 -0.56 5.08 -104.40 -0.53 -1.09 16 9 C 0.12 1.62 2.26 -68.87 -0.16 1.47 16 10 H 0.09 1.34 6.31 -51.93 -0.33 1.01 16 11 C -0.18 -2.21 8.96 37.16 0.33 -1.87 16 12 N -0.67 -10.12 5.13 -99.21 -0.51 -10.63 16 13 C 0.08 1.46 3.17 -66.04 -0.21 1.25 16 14 H 0.07 1.29 7.44 -51.93 -0.39 0.91 16 15 C -0.15 -2.74 5.12 -25.61 -0.13 -2.87 16 16 C -0.10 -2.20 5.60 -25.61 -0.14 -2.35 16 17 C 0.05 1.16 2.72 -90.11 -0.24 0.92 16 18 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 19 C -0.51 -14.07 8.37 -34.44 -0.29 -14.36 16 20 H 0.06 1.53 7.77 -52.49 -0.41 1.12 16 21 C 0.06 1.69 5.35 -17.82 -0.10 1.59 16 22 N -0.89 -25.92 12.63 55.43 0.70 -25.22 16 23 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C -0.10 -2.06 5.96 -24.73 -0.15 -2.21 16 28 H 0.08 0.54 7.75 -51.92 -0.40 0.14 16 29 H 0.08 0.51 7.75 -51.93 -0.40 0.11 16 30 H 0.11 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.12 0.99 5.88 -52.49 -0.31 0.68 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.13 1.58 6.88 -52.49 -0.36 1.22 16 35 H 0.07 0.88 6.13 -51.93 -0.32 0.56 16 36 H 0.06 0.75 7.73 -51.93 -0.40 0.35 16 37 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 38 H 0.34 4.81 7.24 -39.29 -0.28 4.53 16 39 H 0.04 0.77 7.41 -51.93 -0.38 0.39 16 40 H 0.05 0.82 7.52 -51.93 -0.39 0.43 16 41 H 0.05 1.23 7.83 -51.93 -0.41 0.82 16 42 H 0.05 1.29 8.06 -51.93 -0.42 0.87 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.06 1.24 8.05 -51.93 -0.42 0.82 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 362.43 15.07 5.46 5.46 Total: -1.00 -29.23 362.43 -11.32 -40.54 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.29 Total: 4.06 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -2.46 Total: -27.32 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.19 Total: -35.85 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -2.20 Total: -3.41 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.23 -11.32 -40.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453297905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.052 kcal (2) G-P(sol) polarization free energy of solvation -29.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds