Wall clock time and date at job start Tue Mar 31 2020 09:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76199 * 102.99780 * 2 1 4 4 C 1.38998 * 120.08306 * 359.97438 * 3 2 1 5 5 C 1.38059 * 119.92044 * 180.02562 * 4 3 2 6 6 C 1.38322 * 120.08111 * 0.02562 * 5 4 3 7 7 C 1.38291 * 120.16150 * 359.70622 * 6 5 4 8 8 C 1.38108 * 120.07534 * 0.55027 * 7 6 5 9 9 C 1.50699 * 120.03745 * 179.74671 * 8 7 6 10 10 H 1.09002 * 109.46959 * 144.72359 * 9 8 7 11 11 C 1.52997 * 109.47078 * 264.72270 * 9 8 7 12 12 N 1.46899 * 109.47244 * 24.72480 * 9 8 7 13 13 C 1.46894 * 111.00220 * 154.99886 * 12 9 8 14 14 H 1.09005 * 110.43314 * 327.54364 * 13 12 9 15 15 C 1.54272 * 110.48576 * 90.22557 * 13 12 9 16 16 C 1.53869 * 106.59814 * 142.29091 * 15 13 12 17 17 C 1.54270 * 106.60196 * 359.97438 * 16 15 13 18 18 H 1.08998 * 110.48444 * 95.07146 * 17 16 15 19 19 C 1.50699 * 110.60086 * 217.65929 * 17 16 15 20 20 H 1.07998 * 119.99802 * 114.83992 * 19 17 16 21 21 C 1.37875 * 119.99616 * 294.83890 * 19 17 16 22 22 N 1.31517 * 120.00531 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 119.99736 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47069 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47547 * 119.99819 * 23 21 19 26 26 H 1.48507 * 109.47201 * 240.00022 * 23 21 19 27 27 C 1.54887 * 104.19269 * 336.39245 * 17 16 15 28 28 H 1.09005 * 109.47255 * 299.99930 * 1 2 3 29 29 H 1.08995 * 109.47328 * 60.00088 * 1 2 3 30 30 H 1.09005 * 109.47242 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.03561 * 359.97438 * 4 3 2 32 32 H 1.07993 * 119.96085 * 179.97438 * 5 4 3 33 33 H 1.07994 * 119.91923 * 179.97438 * 6 5 4 34 34 H 1.07991 * 119.96088 * 180.27616 * 7 6 5 35 35 H 1.08998 * 109.47533 * 179.97438 * 11 9 8 36 36 H 1.08996 * 109.47853 * 300.00179 * 11 9 8 37 37 H 1.09002 * 109.47153 * 60.00207 * 11 9 8 38 38 H 1.00900 * 110.99934 * 278.95393 * 12 9 8 39 39 H 1.09005 * 110.02737 * 261.57380 * 15 13 12 40 40 H 1.08994 * 110.03513 * 23.00330 * 15 13 12 41 41 H 1.09001 * 110.03312 * 240.71662 * 16 15 13 42 42 H 1.09004 * 110.07563 * 119.31012 * 16 15 13 43 43 H 0.97003 * 119.99814 * 180.02562 * 22 21 19 44 44 H 1.08999 * 110.75930 * 279.62477 * 27 17 16 45 45 H 1.09000 * 110.91372 * 156.32882 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7168 0.0000 4 6 1.1950 2.6662 -0.0005 5 6 1.5094 4.0106 -0.0011 6 6 2.8327 4.4132 -0.0016 7 6 3.8454 3.4715 0.0045 8 6 3.5385 2.1250 -0.0003 9 6 4.6428 1.0995 0.0006 10 1 4.3362 0.2359 0.5907 11 6 4.9312 0.6593 -1.4360 12 7 5.8557 1.6866 0.5857 13 6 6.7268 0.6452 1.1466 14 1 6.1311 -0.1816 1.5333 15 6 7.7240 0.1441 0.0814 16 6 9.0555 -0.1081 0.8100 17 6 8.8214 0.2492 2.2924 18 1 8.5656 -0.6429 2.8640 19 6 10.0402 0.9164 2.8759 20 1 9.9893 1.9452 3.2004 21 6 11.2201 0.2133 2.9955 22 7 11.2822 -1.0395 2.6000 23 14 12.7307 1.0400 3.7195 24 1 12.4012 2.4415 4.0838 25 1 13.1655 0.3020 4.9325 26 1 13.8265 1.0342 2.7172 27 6 7.6266 1.2344 2.2615 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.1616 2.3526 -0.0014 32 1 0.7211 4.7488 -0.0019 33 1 3.0756 5.4654 -0.0024 34 1 4.8775 3.7894 0.0086 35 1 5.7302 -0.0820 -1.4354 36 1 4.0313 0.2237 -1.8702 37 1 5.2378 1.5230 -2.0260 38 1 6.3508 2.2452 -0.0932 39 1 7.3606 -0.7822 -0.3637 40 1 7.8583 0.9021 -0.6903 41 1 9.8361 0.5276 0.3920 42 1 9.3394 -1.1565 0.7186 43 1 12.1123 -1.5342 2.6845 44 1 7.9604 2.2382 1.9989 45 1 7.1028 1.2408 3.2173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453297905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:14:16 Heat of formation + Delta-G solvation = -5.755134 kcal Electronic energy + Delta-G solvation = -22624.488962 eV Core-core repulsion = 19538.298692 eV Total energy + Delta-G solvation = -3086.190270 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.55126 -39.28515 -36.66469 -34.40584 -32.21343 -32.00963 -29.97836 -29.75641 -29.61111 -27.69317 -25.66218 -24.31889 -23.62760 -21.59054 -21.05737 -20.91347 -18.58667 -18.27770 -17.26813 -16.73925 -16.51698 -16.36703 -15.67740 -15.44887 -14.99039 -14.85793 -14.73877 -14.55236 -14.43942 -14.15757 -13.86662 -13.68979 -13.44534 -13.30265 -13.18903 -12.92239 -12.67249 -12.57395 -12.36324 -12.26560 -12.16835 -11.96904 -11.69063 -11.53793 -11.33116 -11.04405 -10.86284 -10.72396 -10.58880 -10.46700 -9.67237 -9.26880 -8.32314 -8.10415 -6.19564 0.32804 0.49025 0.64287 1.40086 1.41824 1.53615 1.55773 2.44566 2.80289 3.18342 3.22237 3.80448 3.95555 4.05737 4.07871 4.20744 4.25280 4.27788 4.29186 4.31141 4.36455 4.52550 4.61103 4.71016 4.79926 4.83437 4.88647 4.90823 4.92649 5.02832 5.05943 5.13683 5.18998 5.25805 5.26593 5.39806 5.43129 5.46515 5.61345 5.66480 5.67968 5.94894 6.00898 6.05937 6.23812 6.42895 6.54612 6.92439 7.47722 8.98953 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024528 B = 0.002991 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.269034 B = 9359.857450 C = 9924.904744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.156 6.156 3 C -0.096 4.096 4 C -0.141 4.141 5 C -0.110 4.110 6 C -0.131 4.131 7 C -0.094 4.094 8 C -0.064 4.064 9 C 0.126 3.874 10 H 0.075 0.925 11 C -0.171 4.171 12 N -0.671 5.671 13 C 0.099 3.901 14 H 0.068 0.932 15 C -0.135 4.135 16 C -0.086 4.086 17 C 0.037 3.963 18 H -0.005 1.005 19 C -0.527 4.527 20 H 0.053 0.947 21 C 0.009 3.991 22 N -0.922 5.922 23 Si 0.953 3.047 24 H -0.266 1.266 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.089 4.089 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.131 0.869 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.346 0.654 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.029 0.971 42 H 0.025 0.975 43 H 0.259 0.741 44 H 0.057 0.943 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.725 7.070 -9.478 26.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.086 5.914 3 C -0.209 4.209 4 C -0.164 4.164 5 C -0.129 4.129 6 C -0.151 4.151 7 C -0.114 4.114 8 C -0.070 4.070 9 C 0.016 3.984 10 H 0.093 0.907 11 C -0.230 4.230 12 N -0.301 5.301 13 C -0.011 4.011 14 H 0.086 0.914 15 C -0.174 4.174 16 C -0.125 4.125 17 C 0.018 3.982 18 H 0.013 0.987 19 C -0.565 4.565 20 H 0.071 0.929 21 C -0.189 4.189 22 N -0.561 5.561 23 Si 0.778 3.222 24 H -0.190 1.190 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.127 4.127 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.139 0.861 31 H 0.159 0.841 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.149 0.851 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.166 0.834 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.289 5.999 -8.887 25.639 hybrid contribution 0.861 0.573 -0.227 1.059 sum -22.429 6.572 -9.114 25.086 Atomic orbital electron populations 1.23773 0.92257 1.08213 1.06385 1.85752 1.09387 1.03690 1.92545 1.21679 0.96122 0.96837 1.06292 1.21370 0.98490 0.93348 1.03204 1.21346 0.97146 0.95513 0.98913 1.21495 0.92826 1.00440 1.00318 1.21107 1.00421 0.91768 0.98114 1.19560 0.91782 0.95076 1.00630 1.20376 0.88958 0.94286 0.94791 0.90671 1.22459 1.02451 1.01948 0.96116 1.60623 1.07345 1.22825 1.39291 1.22291 0.91994 0.92460 0.94324 0.91351 1.22859 0.96048 1.00625 0.97902 1.21820 0.95034 0.98321 0.97284 1.19438 0.92743 0.93409 0.92574 0.98671 1.21570 0.96269 0.98128 1.40564 0.92920 1.25784 1.01744 0.95419 0.95977 1.70112 1.27263 1.10086 1.48684 0.85587 0.79560 0.78963 0.78052 1.19001 1.20753 1.20663 1.22348 0.95002 0.98750 0.96611 0.89104 0.88697 0.86094 0.84108 0.83343 0.83963 0.85110 0.92100 0.91411 0.91848 0.83404 0.92299 0.91380 0.95213 0.95633 0.93227 0.92446 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.15 113.37 1.04 -0.58 16 2 S -0.16 -3.25 20.47 -56.49 -1.16 -4.41 16 3 C -0.10 -2.20 6.11 22.62 0.14 -2.06 16 4 C -0.14 -2.59 9.36 22.41 0.21 -2.38 16 5 C -0.11 -1.84 10.04 22.25 0.22 -1.62 16 6 C -0.13 -2.45 10.04 22.30 0.22 -2.23 16 7 C -0.09 -2.17 9.32 22.25 0.21 -1.96 16 8 C -0.06 -1.61 5.08 -19.72 -0.10 -1.71 16 9 C 0.13 3.34 2.26 44.17 0.10 3.44 16 10 H 0.08 2.23 6.31 -2.39 -0.02 2.22 16 11 C -0.17 -4.05 8.96 71.98 0.65 -3.40 16 12 N -0.67 -19.61 5.13 -467.78 -2.40 -22.01 16 13 C 0.10 3.50 3.17 46.00 0.15 3.64 16 14 H 0.07 2.48 7.44 -2.38 -0.02 2.46 16 15 C -0.14 -4.89 5.12 31.32 0.16 -4.73 16 16 C -0.09 -4.09 5.60 31.32 0.18 -3.92 16 17 C 0.04 1.93 2.72 -10.46 -0.03 1.90 16 18 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 19 C -0.53 -29.88 8.37 25.60 0.21 -29.66 16 20 H 0.05 2.94 7.77 -2.91 -0.02 2.92 16 21 C 0.01 0.51 5.35 84.65 0.45 0.97 16 22 N -0.92 -55.10 12.63 21.45 0.27 -54.82 16 23 Si 0.95 44.70 29.54 68.60 2.03 46.72 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 27 C -0.09 -3.77 5.96 31.89 0.19 -3.58 16 28 H 0.09 0.94 7.75 -2.39 -0.02 0.92 16 29 H 0.09 0.89 7.75 -2.39 -0.02 0.87 16 30 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.14 1.87 5.88 -2.91 -0.02 1.86 16 32 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.13 2.96 6.88 -2.92 -0.02 2.94 16 35 H 0.06 1.51 6.13 -2.39 -0.01 1.49 16 36 H 0.07 1.54 7.73 -2.39 -0.02 1.53 16 37 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 38 H 0.35 9.37 7.24 -89.69 -0.65 8.72 16 39 H 0.06 1.99 7.41 -2.38 -0.02 1.97 16 40 H 0.07 2.21 7.52 -2.39 -0.02 2.19 16 41 H 0.03 1.49 7.83 -2.39 -0.02 1.47 16 42 H 0.02 1.31 8.06 -2.39 -0.02 1.29 16 43 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 44 H 0.06 2.43 8.05 -2.39 -0.02 2.41 16 45 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -64.54 362.43 3.06 -61.48 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.32 Total: 20.91 kcal Atomic # 6 Polarization: -51.87 SS G_CDS: 4.00 Total: -47.87 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -2.13 Total: -76.83 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -1.16 Total: -4.41 kcal Total: -64.54 3.06 -61.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453297905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.723 kcal (2) G-P(sol) polarization free energy of solvation -64.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds