Wall clock time and date at job start Tue Mar 31 2020 08:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 13 13 N 1.46500 * 109.46998 * 299.99786 * 12 2 1 14 14 C 1.34769 * 120.00237 * 180.02562 * 13 12 2 15 15 O 1.21282 * 119.99855 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00461 * 180.02562 * 14 13 12 17 17 H 1.09001 * 115.54285 * 325.72314 * 16 14 13 18 18 C 1.53004 * 117.49964 * 111.38670 * 16 14 13 19 19 C 1.52995 * 117.50223 * 180.02562 * 16 14 13 20 20 H 1.09001 * 117.49749 * 145.02104 * 19 16 14 21 21 C 1.50703 * 117.49790 * 359.97438 * 19 16 14 22 22 C 1.38242 * 119.97580 * 299.72269 * 21 19 16 23 23 C 1.38196 * 120.02608 * 179.76440 * 22 21 19 24 24 C 1.38464 * 119.97219 * 0.51259 * 23 22 21 25 25 F 1.35101 * 120.02543 * 179.76454 * 24 23 22 26 26 C 1.38455 * 119.95020 * 359.74186 * 24 23 22 27 27 C 1.38203 * 119.97273 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 35 35 H 1.08993 * 109.46955 * 60.00011 * 12 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 37 37 H 0.97003 * 119.99531 * 359.97438 * 13 12 2 38 38 H 1.08997 * 117.49598 * 214.98453 * 18 16 14 39 39 H 1.09002 * 117.49826 * 359.97438 * 18 16 14 40 40 H 1.08005 * 119.98516 * 0.02562 * 22 21 19 41 41 H 1.07995 * 120.01416 * 180.25474 * 23 22 21 42 42 H 1.07998 * 120.01285 * 180.02562 * 26 24 23 43 43 H 1.07997 * 119.98440 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3225 -1.1196 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8278 -0.4192 -5.2204 11 1 3.8074 -1.1190 -4.0077 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5749 -1.4770 3.7807 16 6 1.3749 0.2191 4.9000 17 1 1.2866 1.3022 4.8146 18 6 0.3415 -0.5082 5.7627 19 6 1.7802 -0.3519 6.2603 20 1 1.9585 0.3555 7.0702 21 6 2.6511 -1.5818 6.2672 22 6 2.2029 -2.7488 5.6771 23 6 3.0027 -3.8758 5.6786 24 6 4.2491 -3.8388 6.2806 25 9 5.0299 -4.9413 6.2867 26 6 4.6947 -2.6709 6.8758 27 6 3.8951 -1.5437 6.8690 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 0.7089 1.1614 -3.4843 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 0.9943 0.7581 2.3564 38 1 -0.4264 0.0965 6.2451 39 1 0.0250 -1.5000 5.4399 40 1 1.2290 -2.7786 5.2112 41 1 2.6540 -4.7863 5.2140 42 1 5.6669 -2.6408 7.3453 43 1 4.2424 -0.6327 7.3336 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457984479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:10 Heat of formation + Delta-G solvation = -32.045819 kcal Electronic energy + Delta-G solvation = -24908.842286 eV Core-core repulsion = 21255.298790 eV Total energy + Delta-G solvation = -3653.543496 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.75121 -40.37173 -38.52305 -36.75045 -35.77355 -33.28459 -31.02771 -30.92904 -29.98022 -26.15075 -25.75263 -25.24367 -23.86323 -23.25940 -22.71430 -20.75677 -19.68367 -18.76076 -17.85291 -17.16826 -16.17472 -15.85419 -15.45656 -15.42502 -15.13223 -14.87617 -14.59810 -14.29563 -14.05561 -13.47528 -13.19532 -13.05106 -12.89580 -12.76376 -12.55831 -12.22296 -12.02337 -11.56140 -11.40073 -11.20617 -10.94659 -10.87340 -10.74937 -10.61093 -10.55424 -10.39156 -10.21871 -9.66161 -9.62969 -9.30179 -8.83157 -8.80616 -8.44922 -8.30420 -8.04228 -6.03829 -4.13985 1.24981 1.45346 2.79718 3.29045 3.33325 3.36759 3.56363 3.70633 3.99672 4.38350 4.41737 4.48654 4.70758 4.81759 4.84262 5.00686 5.05041 5.22967 5.24951 5.35047 5.51551 5.55653 5.71829 5.86531 6.02065 6.14386 6.21999 6.27107 6.30589 6.40000 6.48667 6.65703 6.75897 6.79794 6.91134 6.99284 7.02271 7.05200 7.33219 7.53199 7.67454 7.98645 8.04679 8.14196 8.36675 8.70692 8.86663 9.51964 10.97515 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.003447 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.834029 B = 8120.694250 C = 9200.755560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.134 3.866 13 N -0.711 5.711 14 C 0.526 3.474 15 O -0.535 6.535 16 C -0.178 4.178 17 H 0.125 0.875 18 C -0.149 4.149 19 C -0.085 4.085 20 H 0.120 0.880 21 C -0.053 4.053 22 C -0.019 4.019 23 C -0.159 4.159 24 C 0.093 3.907 25 F -0.148 7.148 26 C -0.165 4.165 27 C -0.086 4.086 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.026 0.974 31 H 0.006 0.994 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.260 0.740 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.397 0.603 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 -0.491 18.736 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.011 3.989 13 N -0.361 5.361 14 C 0.311 3.689 15 O -0.413 6.413 16 C -0.200 4.200 17 H 0.143 0.857 18 C -0.187 4.187 19 C -0.103 4.103 20 H 0.138 0.862 21 C -0.053 4.053 22 C -0.037 4.037 23 C -0.178 4.178 24 C 0.074 3.926 25 F -0.126 7.126 26 C -0.184 4.184 27 C -0.104 4.104 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.045 0.955 31 H 0.025 0.975 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.232 0.768 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.301 -1.123 18.613 18.649 hybrid contribution 0.274 -0.115 -1.164 1.201 sum -0.028 -1.238 17.449 17.493 Atomic orbital electron populations 1.21822 0.97759 0.99113 1.00069 1.18349 0.92780 0.92745 0.90589 1.21824 0.98553 0.98366 1.00051 1.20943 1.31546 1.12111 0.89924 0.92556 1.24871 0.94834 0.94906 0.98830 1.69792 1.36640 1.22708 1.23338 0.86638 0.79272 0.79801 0.82188 1.20274 1.21304 1.20276 1.21693 0.98087 0.95685 0.83408 1.46307 1.52199 1.31727 1.05873 1.19608 0.80769 0.84519 0.84005 1.90734 1.38242 1.26311 1.86040 1.22407 1.05959 1.00400 0.91201 0.85719 1.23130 0.91860 1.02303 1.01369 1.21013 0.95786 0.97492 0.96039 0.86171 1.18854 0.94463 0.93341 0.98648 1.20589 0.99160 0.90842 0.93156 1.20952 0.93813 1.00349 1.02637 1.17675 0.90138 0.83350 1.01434 1.91460 1.74230 1.51972 1.94964 1.20901 1.01238 0.92434 1.03827 1.20613 0.93172 0.97443 0.99164 0.89626 0.97495 0.95512 0.97534 0.95498 0.89605 0.92947 0.92833 0.92800 0.76772 0.87369 0.87872 0.85970 0.85412 0.85416 0.85691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.90 8.08 37.15 0.30 -2.60 16 4 C -0.51 -13.19 8.01 -34.44 -0.28 -13.46 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.43 9.35 55.43 0.52 -22.91 16 8 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.13 2.77 4.50 -4.04 -0.02 2.75 16 13 N -0.71 -12.03 4.96 -60.29 -0.30 -12.32 16 14 C 0.53 8.35 7.48 -10.99 -0.08 8.27 16 15 O -0.53 -10.01 11.73 5.56 0.07 -9.94 16 16 C -0.18 -2.02 6.19 -91.77 -0.57 -2.59 16 17 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 18 C -0.15 -1.38 9.57 -26.71 -0.26 -1.63 16 19 C -0.08 -0.86 6.04 -91.76 -0.55 -1.42 16 20 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 21 C -0.05 -0.67 4.35 -104.62 -0.46 -1.12 16 22 C -0.02 -0.27 6.19 -39.60 -0.24 -0.51 16 23 C -0.16 -2.25 10.03 -39.51 -0.40 -2.65 16 24 C 0.09 1.33 7.30 -39.42 -0.29 1.04 16 25 F -0.15 -2.16 17.27 2.25 0.04 -2.12 16 26 C -0.17 -2.10 10.03 -39.51 -0.40 -2.49 16 27 C -0.09 -1.03 9.73 -39.59 -0.39 -1.41 16 28 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 34 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.40 6.10 6.16 -40.82 -0.25 5.85 16 38 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 1.03 6.17 -51.93 -0.32 0.71 16 40 H 0.12 1.62 5.79 -52.48 -0.30 1.31 16 41 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 43 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -28.57 346.60 -8.95 -37.53 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.99 Total: 6.42 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -3.49 Total: -17.53 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.22 Total: -35.24 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.57 -8.95 -37.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457984479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.479 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds