Wall clock time and date at job start Tue Mar 31 2020 08:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 13 13 N 1.46500 * 109.46998 * 299.99786 * 12 2 1 14 14 C 1.34769 * 120.00237 * 180.02562 * 13 12 2 15 15 O 1.21282 * 119.99855 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00461 * 180.02562 * 14 13 12 17 17 H 1.09001 * 115.54285 * 325.72314 * 16 14 13 18 18 C 1.53004 * 117.49964 * 111.38670 * 16 14 13 19 19 C 1.52995 * 117.50223 * 180.02562 * 16 14 13 20 20 H 1.09001 * 117.49749 * 145.02104 * 19 16 14 21 21 C 1.50703 * 117.49790 * 359.97438 * 19 16 14 22 22 C 1.38242 * 119.97580 * 299.72269 * 21 19 16 23 23 C 1.38196 * 120.02608 * 179.76440 * 22 21 19 24 24 C 1.38464 * 119.97219 * 0.51259 * 23 22 21 25 25 F 1.35101 * 120.02543 * 179.76454 * 24 23 22 26 26 C 1.38455 * 119.95020 * 359.74186 * 24 23 22 27 27 C 1.38203 * 119.97273 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 35 35 H 1.08993 * 109.46955 * 60.00011 * 12 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 37 37 H 0.97003 * 119.99531 * 359.97438 * 13 12 2 38 38 H 1.08997 * 117.49598 * 214.98453 * 18 16 14 39 39 H 1.09002 * 117.49826 * 359.97438 * 18 16 14 40 40 H 1.08005 * 119.98516 * 0.02562 * 22 21 19 41 41 H 1.07995 * 120.01416 * 180.25474 * 23 22 21 42 42 H 1.07998 * 120.01285 * 180.02562 * 26 24 23 43 43 H 1.07997 * 119.98440 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3225 -1.1196 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8278 -0.4192 -5.2204 11 1 3.8074 -1.1190 -4.0077 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5749 -1.4770 3.7807 16 6 1.3749 0.2191 4.9000 17 1 1.2866 1.3022 4.8146 18 6 0.3415 -0.5082 5.7627 19 6 1.7802 -0.3519 6.2603 20 1 1.9585 0.3555 7.0702 21 6 2.6511 -1.5818 6.2672 22 6 2.2029 -2.7488 5.6771 23 6 3.0027 -3.8758 5.6786 24 6 4.2491 -3.8388 6.2806 25 9 5.0299 -4.9413 6.2867 26 6 4.6947 -2.6709 6.8758 27 6 3.8951 -1.5437 6.8690 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 0.7089 1.1614 -3.4843 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 0.9943 0.7581 2.3564 38 1 -0.4264 0.0965 6.2451 39 1 0.0250 -1.5000 5.4399 40 1 1.2290 -2.7786 5.2112 41 1 2.6540 -4.7863 5.2140 42 1 5.6669 -2.6408 7.3453 43 1 4.2424 -0.6327 7.3336 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457984479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:09 Heat of formation + Delta-G solvation = -46.197667 kcal Electronic energy + Delta-G solvation = -24909.455956 eV Core-core repulsion = 21255.298790 eV Total energy + Delta-G solvation = -3654.157166 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.85231 -41.43973 -39.71309 -38.20149 -36.93345 -34.92955 -32.73172 -31.98548 -30.99578 -27.71051 -27.56084 -27.12118 -24.78928 -24.45834 -23.69771 -21.71101 -20.86786 -20.53176 -18.91805 -18.31235 -17.73665 -17.19066 -16.70911 -16.63647 -16.53352 -16.19271 -15.92428 -15.49713 -15.22446 -14.79808 -14.45410 -14.36799 -14.30582 -14.06578 -13.95647 -13.47929 -13.19690 -13.10763 -12.95531 -12.68161 -12.63289 -12.37933 -12.24944 -12.14214 -11.85896 -11.52835 -11.46828 -11.34765 -11.21473 -10.78249 -10.65797 -10.40109 -9.94161 -9.70976 -9.07705 -8.03246 -6.18878 0.24202 0.46084 1.42271 1.43740 1.50160 1.67423 2.34392 2.50191 2.65692 3.13584 3.20235 3.40135 3.61606 3.84407 3.93211 3.99289 4.03111 4.10445 4.37081 4.42922 4.47579 4.52538 4.60781 4.72274 4.87714 4.94496 5.02250 5.06324 5.08442 5.09664 5.14423 5.19831 5.21422 5.28705 5.39407 5.41501 5.65581 5.66346 5.67491 5.70058 6.07063 6.15734 6.22201 6.43326 6.78580 6.85306 7.45382 7.48836 8.95243 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.003447 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.834029 B = 8120.694250 C = 9200.755560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.530 4.530 5 H 0.040 0.960 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.942 3.058 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.279 1.279 12 C 0.153 3.847 13 N -0.709 5.709 14 C 0.519 3.481 15 O -0.567 6.567 16 C -0.185 4.185 17 H 0.155 0.845 18 C -0.133 4.133 19 C -0.083 4.083 20 H 0.157 0.843 21 C -0.060 4.060 22 C -0.033 4.033 23 C -0.179 4.179 24 C 0.067 3.933 25 F -0.156 7.156 26 C -0.168 4.168 27 C -0.087 4.087 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.016 0.984 31 H 0.039 0.961 32 H 0.015 0.985 33 H 0.062 0.938 34 H 0.260 0.740 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.407 0.593 38 H 0.144 0.856 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.148 0.852 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.434 1.464 20.690 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.569 4.569 5 H 0.059 0.941 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.769 3.231 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.204 1.204 12 C 0.029 3.971 13 N -0.360 5.360 14 C 0.307 3.693 15 O -0.448 6.448 16 C -0.206 4.206 17 H 0.173 0.827 18 C -0.170 4.170 19 C -0.101 4.101 20 H 0.174 0.826 21 C -0.060 4.060 22 C -0.051 4.051 23 C -0.198 4.198 24 C 0.048 3.952 25 F -0.135 7.135 26 C -0.187 4.187 27 C -0.105 4.105 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.244 0.756 38 H 0.162 0.838 39 H 0.108 0.892 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.166 0.834 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.997 0.846 20.582 20.624 hybrid contribution 0.496 -0.760 -1.747 1.968 sum -0.501 0.086 18.836 18.843 Atomic orbital electron populations 1.21646 0.96992 0.98527 1.00451 1.18348 0.93310 0.93001 0.90308 1.21653 0.97711 0.97872 1.00459 1.21247 1.31754 1.12129 0.91780 0.94121 1.25416 0.95138 0.95579 1.00837 1.69893 1.36910 1.23173 1.23654 0.85871 0.78592 0.78863 0.79805 1.20343 1.20637 1.20420 1.21140 0.96538 0.94857 0.84540 1.46138 1.52661 1.31958 1.05232 1.20488 0.79841 0.84130 0.84800 1.90741 1.39562 1.27886 1.86575 1.22395 1.07674 1.01522 0.88973 0.82717 1.23290 0.92160 1.01902 0.99684 1.21242 0.95915 0.96804 0.96126 0.82578 1.19247 0.95198 0.93894 0.97708 1.20707 0.99198 0.91441 0.93792 1.21112 0.94399 1.00913 1.03346 1.17957 0.90445 0.83963 1.02861 1.91428 1.74400 1.52506 1.95171 1.21237 1.02236 0.92030 1.03185 1.21034 0.92676 0.98241 0.98565 0.92004 0.94192 0.96528 0.94214 0.96628 0.91959 0.92999 0.94793 0.95026 0.75586 0.83799 0.89186 0.86197 0.85613 0.83447 0.82434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 8.08 71.98 0.58 -4.57 16 2 C 0.05 2.33 0.50 -52.93 -0.03 2.30 16 3 C -0.12 -5.22 8.08 71.98 0.58 -4.63 16 4 C -0.53 -28.16 8.01 25.60 0.21 -27.95 16 5 H 0.04 2.22 7.74 -2.91 -0.02 2.20 16 6 C 0.03 1.59 5.15 84.65 0.44 2.03 16 7 N -0.90 -47.64 9.35 21.45 0.20 -47.44 16 8 Si 0.94 42.75 29.54 68.60 2.03 44.78 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 C 0.15 6.42 4.50 86.38 0.39 6.81 16 13 N -0.71 -22.92 4.96 -463.06 -2.30 -25.22 16 14 C 0.52 15.65 7.48 87.66 0.66 16.31 16 15 O -0.57 -21.11 11.73 -3.04 -0.04 -21.15 16 16 C -0.18 -3.47 6.19 -11.54 -0.07 -3.54 16 17 H 0.16 2.03 8.14 -2.39 -0.02 2.01 16 18 C -0.13 -1.92 9.57 30.61 0.29 -1.63 16 19 C -0.08 -1.35 6.04 -11.53 -0.07 -1.42 16 20 H 0.16 1.47 8.14 -2.39 -0.02 1.45 16 21 C -0.06 -1.40 4.35 -19.86 -0.09 -1.49 16 22 C -0.03 -0.91 6.19 22.26 0.14 -0.77 16 23 C -0.18 -5.27 10.03 22.31 0.22 -5.05 16 24 C 0.07 1.94 7.30 22.38 0.16 2.11 16 25 F -0.16 -4.73 17.27 44.97 0.78 -3.95 16 26 C -0.17 -4.09 10.03 22.31 0.22 -3.86 16 27 C -0.09 -1.88 9.73 22.26 0.22 -1.66 16 28 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 29 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 30 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 32 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 34 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 35 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.41 11.36 6.16 -92.71 -0.57 10.79 16 38 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 1.58 6.17 -2.39 -0.01 1.57 16 40 H 0.12 3.21 5.79 -2.91 -0.02 3.20 16 41 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 42 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 43 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -63.83 346.60 4.98 -58.85 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.46 Total: 21.14 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 3.85 Total: -27.02 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -2.10 Total: -72.66 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.04 Total: -21.15 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.78 Total: -3.95 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -63.83 4.98 -58.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457984479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.654 kcal (2) G-P(sol) polarization free energy of solvation -63.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds