Wall clock time and date at job start Tue Mar 31 2020 08:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 C 1.50696 * 109.47432 * 120.00481 * 2 1 3 5 5 H 1.08004 * 120.00484 * 114.23170 * 4 2 1 6 6 C 1.37882 * 120.00211 * 294.23859 * 4 2 1 7 7 N 1.31513 * 120.00140 * 209.34331 * 6 4 2 8 8 Si 1.86797 * 119.99592 * 29.34242 * 6 4 2 9 9 H 1.48506 * 109.46875 * 180.02562 * 8 6 4 10 10 H 1.48496 * 109.47616 * 60.00384 * 8 6 4 11 11 H 1.48503 * 109.47427 * 300.00143 * 8 6 4 12 12 C 1.53004 * 109.46905 * 240.00458 * 2 1 3 13 13 N 1.46498 * 109.47038 * 59.99748 * 12 2 1 14 14 C 1.34779 * 119.99708 * 179.97438 * 13 12 2 15 15 O 1.21274 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99589 * 180.02562 * 14 13 12 17 17 H 1.08995 * 115.54947 * 34.41979 * 16 14 13 18 18 C 1.52999 * 117.49762 * 248.74811 * 16 14 13 19 19 C 1.53000 * 117.49451 * 180.08859 * 16 14 13 20 20 H 1.09004 * 117.50342 * 359.97438 * 19 16 14 21 21 C 1.50703 * 117.49734 * 214.97942 * 19 16 14 22 22 C 1.38242 * 119.97475 * 299.72222 * 21 19 16 23 23 C 1.38195 * 120.02609 * 179.76431 * 22 21 19 24 24 C 1.38457 * 119.97466 * 0.51490 * 23 22 21 25 25 F 1.35103 * 120.02959 * 179.76310 * 24 23 22 26 26 C 1.38458 * 119.94870 * 359.74419 * 24 23 22 27 27 C 1.38197 * 119.97368 * 359.97438 * 26 24 23 28 28 H 1.09005 * 109.47219 * 295.40031 * 1 2 3 29 29 H 1.08998 * 109.47325 * 55.40435 * 1 2 3 30 30 H 1.09006 * 109.47262 * 175.40559 * 1 2 3 31 31 H 1.09001 * 109.47398 * 185.31227 * 3 2 1 32 32 H 1.09000 * 109.47333 * 305.32309 * 3 2 1 33 33 H 1.09006 * 109.46401 * 65.31877 * 3 2 1 34 34 H 0.96996 * 119.99717 * 354.99375 * 7 6 4 35 35 H 1.09000 * 109.46887 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.47138 * 299.99834 * 12 2 1 37 37 H 0.97001 * 120.00129 * 0.02562 * 13 12 2 38 38 H 1.09003 * 117.49936 * 359.97438 * 18 16 14 39 39 H 1.08995 * 117.49741 * 145.02421 * 18 16 14 40 40 H 1.08003 * 119.98905 * 0.02810 * 22 21 19 41 41 H 1.08002 * 120.01203 * 180.25631 * 23 22 21 42 42 H 1.08000 * 120.01435 * 179.97438 * 26 24 23 43 43 H 1.08002 * 119.99260 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5743 -1.6397 1.1340 6 6 1.8000 -0.1744 2.4792 7 7 2.6478 -0.3988 3.4593 8 14 0.2811 0.8707 2.7791 9 1 0.2638 1.3246 4.1930 10 1 -0.9359 0.0663 2.5021 11 1 0.3082 2.0528 1.8806 12 6 2.0399 -0.7212 -1.2493 13 7 1.5515 -0.0305 -2.4454 14 6 1.8775 -0.4906 -3.6696 15 8 2.5747 -1.4766 -3.7809 16 6 1.3755 0.2203 -4.9000 17 1 1.2903 1.3035 -4.8151 18 6 0.3394 -0.5046 -5.7613 19 6 1.7785 -0.3523 -6.2604 20 1 2.4071 -1.2429 -6.2655 21 6 2.0267 0.6247 -7.3806 22 6 1.0130 1.4654 -7.8011 23 6 1.2408 2.3651 -8.8250 24 6 2.4817 2.4170 -9.4370 25 9 2.7042 3.2928 -10.4413 26 6 3.4946 1.5708 -9.0186 27 6 3.2662 0.6759 -7.9906 28 1 -0.3634 0.4408 0.9284 29 1 -0.3634 0.5835 -0.8459 30 1 -0.3634 -1.0244 -0.0823 31 1 3.1258 1.4440 -0.0951 32 1 1.6010 1.9831 -0.8385 33 1 1.7565 1.9280 0.9339 34 1 3.3971 -0.9998 3.3242 35 1 3.1299 -0.7208 -1.2496 36 1 1.6766 -1.7489 -1.2494 37 1 0.9941 0.7584 -2.3563 38 1 0.0212 -1.4959 -5.4383 39 1 -0.4272 0.1019 -6.2435 40 1 0.0439 1.4220 -7.3263 41 1 0.4500 3.0247 -9.1505 42 1 4.4629 1.6101 -9.4955 43 1 4.0563 0.0160 -7.6638 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457984481.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:15 Heat of formation + Delta-G solvation = -32.404129 kcal Electronic energy + Delta-G solvation = -24044.005129 eV Core-core repulsion = 20390.446095 eV Total energy + Delta-G solvation = -3653.559033 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.18833 -40.32982 -39.15844 -37.07447 -36.01221 -33.35647 -31.51793 -31.49584 -30.48190 -26.59697 -26.34545 -24.68231 -24.15901 -23.50826 -22.93345 -20.86873 -19.88874 -19.12080 -18.13797 -17.54373 -16.75613 -16.43317 -16.00739 -15.88191 -15.39734 -15.10306 -14.80534 -14.55753 -14.13437 -13.89993 -13.52325 -13.34601 -13.01857 -12.83772 -12.76188 -12.66799 -12.33419 -12.08487 -11.85712 -11.81363 -11.38243 -11.32322 -10.88436 -10.67277 -10.63341 -10.21543 -10.11096 -9.96100 -9.64763 -9.46332 -9.10452 -8.92860 -8.74736 -8.55792 -8.07287 -6.59062 -4.11279 0.73885 0.87826 2.65435 3.13766 3.29414 3.35227 3.50694 3.58215 3.81502 3.93077 4.30300 4.37136 4.40343 4.51267 4.58581 4.68728 4.86625 4.92847 5.10889 5.12242 5.13546 5.38203 5.57420 5.63607 5.72615 5.77782 5.79498 5.81695 5.94718 6.02859 6.06819 6.23206 6.35448 6.46517 6.52216 6.53216 6.62157 6.68497 6.75761 6.94979 7.23298 7.44426 7.89240 8.10450 8.31118 8.54160 8.84649 9.53423 10.81214 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.028188 B = 0.002520 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.083798 B =11107.379782 C =11290.709893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.036 3.964 3 C -0.142 4.142 4 C -0.611 4.611 5 H 0.059 0.941 6 C 0.040 3.960 7 N -0.888 5.888 8 Si 1.058 2.942 9 H -0.299 1.299 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.143 3.857 13 N -0.716 5.716 14 C 0.534 3.466 15 O -0.549 6.549 16 C -0.174 4.174 17 H 0.124 0.876 18 C -0.145 4.145 19 C -0.088 4.088 20 H 0.130 0.870 21 C -0.058 4.058 22 C -0.092 4.092 23 C -0.150 4.150 24 C 0.090 3.910 25 F -0.142 7.142 26 C -0.150 4.150 27 C -0.080 4.080 28 H 0.042 0.958 29 H 0.027 0.973 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.021 0.979 33 H 0.056 0.944 34 H 0.271 0.729 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.398 0.602 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.828 5.618 -23.764 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.034 3.966 3 C -0.199 4.199 4 C -0.648 4.648 5 H 0.077 0.923 6 C -0.168 4.168 7 N -0.520 5.520 8 Si 0.891 3.109 9 H -0.227 1.227 10 H -0.215 1.215 11 H -0.204 1.204 12 C 0.020 3.980 13 N -0.366 5.366 14 C 0.319 3.681 15 O -0.428 6.428 16 C -0.195 4.195 17 H 0.141 0.859 18 C -0.182 4.182 19 C -0.106 4.106 20 H 0.147 0.853 21 C -0.059 4.059 22 C -0.110 4.110 23 C -0.169 4.169 24 C 0.071 3.929 25 F -0.121 7.121 26 C -0.169 4.169 27 C -0.098 4.098 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.232 0.768 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.045 5.843 -22.681 23.959 hybrid contribution 0.549 -0.326 -1.228 1.384 sum -4.497 5.517 -23.909 24.945 Atomic orbital electron populations 1.22359 0.99095 1.00411 0.98715 1.18635 0.91374 0.93045 0.93519 1.22233 1.00399 0.97646 0.99624 1.21604 1.41300 1.11389 0.90501 0.92307 1.25717 1.00003 0.98243 0.92827 1.70871 1.12143 1.31408 1.37575 0.84051 0.75965 0.76332 0.74505 1.22738 1.21506 1.20420 1.21549 0.98520 0.95619 0.82287 1.46259 1.52525 1.31845 1.05928 1.19518 0.80382 0.84221 0.83971 1.90676 1.38497 1.26761 1.86829 1.22417 1.06009 1.00418 0.90647 0.85853 1.23142 0.91667 1.02437 1.00946 1.21056 0.99308 0.99695 0.90548 0.85260 1.19235 0.93763 0.96537 0.96322 1.20961 0.99468 0.94461 0.96092 1.21120 0.96177 1.01318 0.98289 1.17751 0.95099 0.91304 0.88727 1.91499 1.95297 1.67119 1.58158 1.21157 0.99257 0.97126 0.99358 1.20915 0.96753 0.97683 0.94434 0.93923 0.95429 0.93110 0.93577 0.96043 0.92493 0.91855 0.92202 0.92342 0.76757 0.87525 0.87502 0.84710 0.84679 0.84611 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 7.74 37.16 0.29 -2.68 16 2 C 0.04 0.78 0.50 -155.66 -0.08 0.70 16 3 C -0.14 -2.92 7.90 37.16 0.29 -2.62 16 4 C -0.61 -16.33 8.42 -34.44 -0.29 -16.62 16 5 H 0.06 1.72 7.99 -52.48 -0.42 1.30 16 6 C 0.04 1.10 5.06 -17.82 -0.09 1.01 16 7 N -0.89 -26.36 13.70 55.43 0.76 -25.60 16 8 Si 1.06 24.66 23.53 -169.99 -4.00 20.66 16 9 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.29 -6.34 6.69 56.52 0.38 -5.96 16 11 H -0.28 -5.86 5.73 56.52 0.32 -5.54 16 12 C 0.14 2.88 4.51 -4.04 -0.02 2.87 16 13 N -0.72 -11.59 5.02 -60.29 -0.30 -11.89 16 14 C 0.53 8.42 7.61 -10.98 -0.08 8.33 16 15 O -0.55 -10.74 16.26 5.56 0.09 -10.65 16 16 C -0.17 -1.93 5.82 -91.77 -0.53 -2.46 16 17 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 18 C -0.14 -1.30 9.57 -26.69 -0.26 -1.55 16 19 C -0.09 -0.89 5.56 -91.73 -0.51 -1.40 16 20 H 0.13 1.49 7.67 -51.93 -0.40 1.09 16 21 C -0.06 -0.53 5.61 -104.62 -0.59 -1.12 16 22 C -0.09 -0.73 9.30 -39.60 -0.37 -1.10 16 23 C -0.15 -1.22 10.03 -39.52 -0.40 -1.62 16 24 C 0.09 0.84 7.30 -39.42 -0.29 0.55 16 25 F -0.14 -1.43 17.27 2.25 0.04 -1.39 16 26 C -0.15 -1.29 10.03 -39.52 -0.40 -1.69 16 27 C -0.08 -0.71 9.73 -39.59 -0.39 -1.09 16 28 H 0.04 0.89 2.27 -51.93 -0.12 0.77 16 29 H 0.03 0.45 7.00 -51.93 -0.36 0.08 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.02 0.36 7.02 -51.93 -0.36 -0.01 16 33 H 0.06 1.24 4.40 -51.93 -0.23 1.02 16 34 H 0.27 8.03 8.73 -40.82 -0.36 7.67 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.40 5.55 6.24 -40.82 -0.25 5.29 16 38 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.11 0.69 6.17 -51.93 -0.32 0.37 16 40 H 0.14 0.81 6.01 -52.48 -0.32 0.49 16 41 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -30.85 346.50 -7.73 -38.59 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.84 Total: 5.56 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -3.70 Total: -20.50 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.46 Total: -37.49 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -4.00 Total: 20.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.85 -7.73 -38.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457984481.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.182 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds