Wall clock time and date at job start Tue Mar 31 2020 08:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 C 1.50696 * 109.47432 * 120.00481 * 2 1 3 5 5 H 1.08004 * 120.00484 * 114.23170 * 4 2 1 6 6 C 1.37882 * 120.00211 * 294.23859 * 4 2 1 7 7 N 1.31513 * 120.00140 * 209.34331 * 6 4 2 8 8 Si 1.86797 * 119.99592 * 29.34242 * 6 4 2 9 9 H 1.48506 * 109.46875 * 180.02562 * 8 6 4 10 10 H 1.48496 * 109.47616 * 60.00384 * 8 6 4 11 11 H 1.48503 * 109.47427 * 300.00143 * 8 6 4 12 12 C 1.53004 * 109.46905 * 240.00458 * 2 1 3 13 13 N 1.46498 * 109.47038 * 59.99748 * 12 2 1 14 14 C 1.34779 * 119.99708 * 179.97438 * 13 12 2 15 15 O 1.21274 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99589 * 180.02562 * 14 13 12 17 17 H 1.08995 * 115.54947 * 34.41979 * 16 14 13 18 18 C 1.52999 * 117.49762 * 248.74811 * 16 14 13 19 19 C 1.53000 * 117.49451 * 180.08859 * 16 14 13 20 20 H 1.09004 * 117.50342 * 359.97438 * 19 16 14 21 21 C 1.50703 * 117.49734 * 214.97942 * 19 16 14 22 22 C 1.38242 * 119.97475 * 299.72222 * 21 19 16 23 23 C 1.38195 * 120.02609 * 179.76431 * 22 21 19 24 24 C 1.38457 * 119.97466 * 0.51490 * 23 22 21 25 25 F 1.35103 * 120.02959 * 179.76310 * 24 23 22 26 26 C 1.38458 * 119.94870 * 359.74419 * 24 23 22 27 27 C 1.38197 * 119.97368 * 359.97438 * 26 24 23 28 28 H 1.09005 * 109.47219 * 295.40031 * 1 2 3 29 29 H 1.08998 * 109.47325 * 55.40435 * 1 2 3 30 30 H 1.09006 * 109.47262 * 175.40559 * 1 2 3 31 31 H 1.09001 * 109.47398 * 185.31227 * 3 2 1 32 32 H 1.09000 * 109.47333 * 305.32309 * 3 2 1 33 33 H 1.09006 * 109.46401 * 65.31877 * 3 2 1 34 34 H 0.96996 * 119.99717 * 354.99375 * 7 6 4 35 35 H 1.09000 * 109.46887 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.47138 * 299.99834 * 12 2 1 37 37 H 0.97001 * 120.00129 * 0.02562 * 13 12 2 38 38 H 1.09003 * 117.49936 * 359.97438 * 18 16 14 39 39 H 1.08995 * 117.49741 * 145.02421 * 18 16 14 40 40 H 1.08003 * 119.98905 * 0.02810 * 22 21 19 41 41 H 1.08002 * 120.01203 * 180.25631 * 23 22 21 42 42 H 1.08000 * 120.01435 * 179.97438 * 26 24 23 43 43 H 1.08002 * 119.99260 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5743 -1.6397 1.1340 6 6 1.8000 -0.1744 2.4792 7 7 2.6478 -0.3988 3.4593 8 14 0.2811 0.8707 2.7791 9 1 0.2638 1.3246 4.1930 10 1 -0.9359 0.0663 2.5021 11 1 0.3082 2.0528 1.8806 12 6 2.0399 -0.7212 -1.2493 13 7 1.5515 -0.0305 -2.4454 14 6 1.8775 -0.4906 -3.6696 15 8 2.5747 -1.4766 -3.7809 16 6 1.3755 0.2203 -4.9000 17 1 1.2903 1.3035 -4.8151 18 6 0.3394 -0.5046 -5.7613 19 6 1.7785 -0.3523 -6.2604 20 1 2.4071 -1.2429 -6.2655 21 6 2.0267 0.6247 -7.3806 22 6 1.0130 1.4654 -7.8011 23 6 1.2408 2.3651 -8.8250 24 6 2.4817 2.4170 -9.4370 25 9 2.7042 3.2928 -10.4413 26 6 3.4946 1.5708 -9.0186 27 6 3.2662 0.6759 -7.9906 28 1 -0.3634 0.4408 0.9284 29 1 -0.3634 0.5835 -0.8459 30 1 -0.3634 -1.0244 -0.0823 31 1 3.1258 1.4440 -0.0951 32 1 1.6010 1.9831 -0.8385 33 1 1.7565 1.9280 0.9339 34 1 3.3971 -0.9998 3.3242 35 1 3.1299 -0.7208 -1.2496 36 1 1.6766 -1.7489 -1.2494 37 1 0.9941 0.7584 -2.3563 38 1 0.0212 -1.4959 -5.4383 39 1 -0.4272 0.1019 -6.2435 40 1 0.0439 1.4220 -7.3263 41 1 0.4500 3.0247 -9.1505 42 1 4.4629 1.6101 -9.4955 43 1 4.0563 0.0160 -7.6638 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457984481.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:14 Heat of formation + Delta-G solvation = -51.188802 kcal Electronic energy + Delta-G solvation = -24044.819693 eV Core-core repulsion = 20390.446095 eV Total energy + Delta-G solvation = -3654.373598 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.88799 -41.32400 -40.13589 -38.52718 -37.08119 -35.06170 -33.38087 -32.11359 -31.18408 -28.08221 -27.94552 -26.58398 -24.87684 -24.62586 -23.68196 -21.66231 -21.13411 -20.85730 -19.02569 -18.75665 -18.27962 -17.22851 -16.99885 -16.66384 -16.57537 -16.45585 -16.20422 -15.53127 -15.44499 -14.78321 -14.53628 -14.47811 -14.42599 -14.20860 -14.00167 -13.82247 -13.58940 -13.55472 -13.21306 -12.97150 -12.54080 -12.44839 -12.02380 -11.98111 -11.87654 -11.68864 -11.60729 -11.46794 -11.02433 -10.92578 -10.65651 -10.19208 -10.06585 -10.03815 -9.43391 -8.79577 -6.31743 0.07800 0.27879 1.44463 1.51359 1.53162 1.75691 2.19338 2.48063 2.51587 3.01266 3.02472 3.29280 3.52195 3.68590 3.78605 3.89351 3.96567 4.05972 4.15313 4.23128 4.30199 4.31918 4.44411 4.49627 4.71441 4.79524 4.82904 4.85483 4.92361 4.97972 4.98648 5.02661 5.08033 5.12678 5.16143 5.18986 5.29940 5.44606 5.54218 5.58041 5.78348 5.91573 6.02004 6.16736 6.58134 6.64003 7.29187 7.42450 8.59212 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.028188 B = 0.002520 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.083798 B =11107.379782 C =11290.709893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.033 3.967 3 C -0.139 4.139 4 C -0.616 4.616 5 H 0.011 0.989 6 C -0.011 4.011 7 N -0.926 5.926 8 Si 1.094 2.906 9 H -0.313 1.313 10 H -0.264 1.264 11 H -0.232 1.232 12 C 0.159 3.841 13 N -0.705 5.705 14 C 0.530 3.470 15 O -0.595 6.595 16 C -0.177 4.177 17 H 0.152 0.848 18 C -0.122 4.122 19 C -0.090 4.090 20 H 0.107 0.893 21 C -0.065 4.065 22 C -0.086 4.086 23 C -0.149 4.149 24 C 0.073 3.927 25 F -0.150 7.150 26 C -0.156 4.156 27 C -0.092 4.092 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.253 0.747 35 H 0.029 0.971 36 H 0.037 0.963 37 H 0.414 0.586 38 H 0.098 0.902 39 H 0.144 0.856 40 H 0.163 0.837 41 H 0.156 0.844 42 H 0.146 0.854 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.145 8.272 -26.142 28.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.031 3.969 3 C -0.197 4.197 4 C -0.653 4.653 5 H 0.030 0.970 6 C -0.211 4.211 7 N -0.560 5.560 8 Si 0.920 3.080 9 H -0.242 1.242 10 H -0.191 1.191 11 H -0.157 1.157 12 C 0.034 3.966 13 N -0.357 5.357 14 C 0.318 3.682 15 O -0.476 6.476 16 C -0.198 4.198 17 H 0.170 0.830 18 C -0.159 4.159 19 C -0.109 4.109 20 H 0.125 0.875 21 C -0.065 4.065 22 C -0.104 4.104 23 C -0.168 4.168 24 C 0.054 3.946 25 F -0.129 7.129 26 C -0.174 4.174 27 C -0.110 4.110 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.252 0.748 38 H 0.117 0.883 39 H 0.162 0.838 40 H 0.180 0.820 41 H 0.174 0.826 42 H 0.163 0.837 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.374 8.513 -25.109 27.804 hybrid contribution 1.704 -1.287 -0.560 2.208 sum -6.670 7.225 -25.669 27.488 Atomic orbital electron populations 1.22271 0.96475 1.01174 1.00540 1.18578 0.93389 0.93404 0.91483 1.22152 0.99722 0.96709 1.01082 1.21866 1.40247 1.09990 0.93239 0.97041 1.27191 1.01793 0.99523 0.92561 1.71019 1.13018 1.33120 1.38815 0.83675 0.72954 0.76810 0.74608 1.24174 1.19098 1.15720 1.21016 0.96663 0.94981 0.83898 1.45999 1.52716 1.32092 1.04846 1.20369 0.79219 0.83623 0.84950 1.90664 1.40451 1.29033 1.87499 1.22360 1.07711 1.01373 0.88345 0.83035 1.23317 0.91555 1.02271 0.98782 1.20956 1.00308 0.99198 0.90395 0.87502 1.19227 0.94252 0.96827 0.96199 1.21202 1.00063 0.93427 0.95658 1.21388 0.96094 1.01405 0.97876 1.18026 0.95993 0.91588 0.89026 1.91478 1.95422 1.67427 1.58588 1.21294 0.99844 0.96976 0.99335 1.21040 0.97188 0.97984 0.94782 0.94271 0.90730 0.93618 0.95240 0.91323 0.93412 0.93792 0.95206 0.94448 0.74832 0.88349 0.83789 0.81990 0.82644 0.83655 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 7.74 71.98 0.56 -4.79 16 2 C 0.03 1.40 0.50 -52.93 -0.03 1.37 16 3 C -0.14 -5.37 7.90 71.98 0.57 -4.81 16 4 C -0.62 -34.02 8.42 25.60 0.22 -33.81 16 5 H 0.01 0.71 7.99 -2.91 -0.02 0.68 16 6 C -0.01 -0.61 5.06 84.66 0.43 -0.18 16 7 N -0.93 -57.30 13.70 21.45 0.29 -57.00 16 8 Si 1.09 48.12 23.53 68.60 1.61 49.73 16 9 H -0.31 -14.42 7.11 99.48 0.71 -13.71 16 10 H -0.26 -10.62 6.69 99.48 0.67 -9.96 16 11 H -0.23 -8.60 5.73 99.48 0.57 -8.03 16 12 C 0.16 6.45 4.51 86.38 0.39 6.84 16 13 N -0.71 -21.23 5.02 -463.05 -2.32 -23.56 16 14 C 0.53 15.93 7.61 87.66 0.67 16.59 16 15 O -0.59 -23.59 16.26 -3.01 -0.05 -23.64 16 16 C -0.18 -3.33 5.82 -11.54 -0.07 -3.40 16 17 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 18 C -0.12 -1.70 9.57 30.62 0.29 -1.41 16 19 C -0.09 -1.62 5.56 -11.51 -0.06 -1.69 16 20 H 0.11 2.44 7.67 -2.38 -0.02 2.42 16 21 C -0.06 -1.01 5.61 -19.86 -0.11 -1.13 16 22 C -0.09 -1.01 9.30 22.26 0.21 -0.80 16 23 C -0.15 -1.92 10.03 22.31 0.22 -1.70 16 24 C 0.07 1.21 7.30 22.37 0.16 1.37 16 25 F -0.15 -2.81 17.27 44.97 0.78 -2.03 16 26 C -0.16 -2.48 10.03 22.31 0.22 -2.26 16 27 C -0.09 -1.51 9.73 22.26 0.22 -1.30 16 28 H 0.04 1.46 2.27 -2.38 -0.01 1.46 16 29 H 0.07 2.00 7.00 -2.39 -0.02 1.98 16 30 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.99 7.02 -2.39 -0.02 1.97 16 33 H 0.05 1.93 4.40 -2.38 -0.01 1.92 16 34 H 0.25 16.00 8.73 -92.71 -0.81 15.19 16 35 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.41 9.61 6.24 -92.71 -0.58 9.03 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.14 0.96 6.17 -2.39 -0.01 0.94 16 40 H 0.16 0.95 6.01 -2.91 -0.02 0.94 16 41 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 42 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -72.51 346.50 4.44 -68.07 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.25 Total: 19.51 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: 3.88 Total: -31.08 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -2.03 Total: -80.56 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 1.61 Total: 49.73 kcal Total: -72.51 4.44 -68.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457984481.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.882 kcal (2) G-P(sol) polarization free energy of solvation -72.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds