Wall clock time and date at job start Tue Mar 31 2020 08:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47204 * 2 1 4 4 C 1.50704 * 109.46808 * 239.99970 * 2 1 3 5 5 H 1.07997 * 119.99768 * 236.80754 * 4 2 1 6 6 C 1.37875 * 119.99965 * 56.81725 * 4 2 1 7 7 N 1.31519 * 120.00268 * 6.13174 * 6 4 2 8 8 Si 1.86799 * 119.99991 * 186.13476 * 6 4 2 9 9 H 1.48495 * 109.47501 * 94.99297 * 8 6 4 10 10 H 1.48503 * 109.47146 * 214.99347 * 8 6 4 11 11 H 1.48500 * 109.46919 * 334.99168 * 8 6 4 12 12 C 1.53000 * 109.47088 * 120.00448 * 2 1 3 13 13 N 1.46504 * 109.46752 * 299.99693 * 12 2 1 14 14 C 1.34777 * 119.99811 * 179.97438 * 13 12 2 15 15 O 1.21282 * 120.00133 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99843 * 180.02562 * 14 13 12 17 17 C 1.50699 * 109.47009 * 179.97438 * 16 14 13 18 18 C 1.32582 * 120.00189 * 126.60474 * 17 16 14 19 19 C 1.47790 * 119.99860 * 7.12731 * 18 17 16 20 20 C 1.39527 * 120.15262 * 38.51020 * 19 18 17 21 21 C 1.37951 * 119.88056 * 179.97438 * 20 19 18 22 22 C 1.38380 * 120.19571 * 0.02562 * 21 20 19 23 23 C 1.38278 * 120.31277 * 0.02562 * 22 21 20 24 24 C 1.38238 * 120.11414 * 359.97438 * 23 22 21 25 25 F 1.35101 * 120.09900 * 180.02562 * 24 23 22 26 26 H 1.09001 * 109.46977 * 304.53595 * 1 2 3 27 27 H 1.09003 * 109.47172 * 64.53551 * 1 2 3 28 28 H 1.08995 * 109.47197 * 184.52917 * 1 2 3 29 29 H 1.08994 * 109.47053 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47165 * 300.00292 * 3 2 1 31 31 H 1.09001 * 109.47025 * 60.00131 * 3 2 1 32 32 H 0.96995 * 120.00247 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47199 * 179.97438 * 12 2 1 34 34 H 1.08996 * 109.47052 * 59.99745 * 12 2 1 35 35 H 0.96995 * 120.00232 * 0.02562 * 13 12 2 36 36 H 1.09003 * 109.47324 * 60.00213 * 16 14 13 37 37 H 1.08996 * 109.47357 * 299.99888 * 16 14 13 38 38 H 1.08004 * 120.00199 * 306.60462 * 17 16 14 39 39 H 1.07999 * 120.00095 * 187.12389 * 18 17 16 40 40 H 1.08004 * 120.06517 * 359.97438 * 20 19 18 41 41 H 1.08002 * 119.90210 * 179.97438 * 21 20 19 42 42 H 1.08003 * 119.84363 * 179.72294 * 22 21 20 43 43 H 1.08002 * 119.93908 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6950 -1.5575 -1.1322 6 6 1.6459 -0.2789 -2.4817 7 7 0.9386 0.8227 -2.6080 8 14 2.1270 -1.2588 -3.9975 9 1 1.0212 -2.1802 -4.3629 10 1 2.3896 -0.3290 -5.1253 11 1 3.3526 -2.0462 -3.7094 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8768 -0.4915 3.6695 15 8 2.5733 -1.4782 3.7807 16 6 1.3740 0.2185 4.8999 17 6 1.8754 -0.4926 6.1303 18 6 2.5259 0.1828 7.0676 19 6 2.6229 1.6552 6.9845 20 6 1.5341 2.4053 6.5388 21 6 1.6307 3.7794 6.4639 22 6 2.8041 4.4155 6.8289 23 6 3.8885 3.6800 7.2707 24 6 3.8059 2.3024 7.3508 25 9 4.8653 1.5841 7.7830 26 1 -0.3633 0.5826 0.8466 27 1 -0.3634 0.4419 -0.9279 28 1 -0.3633 -1.0244 0.0811 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.6664 1.1261 -3.4882 33 1 3.1300 -0.7218 1.2490 34 1 1.6766 -1.7490 1.2491 35 1 0.9938 0.7577 2.3564 36 1 0.2840 0.2185 4.8996 37 1 1.7374 1.2462 4.9004 38 1 1.7048 -1.5525 6.2487 39 1 2.9849 -0.3429 7.8918 40 1 0.6173 1.9111 6.2529 41 1 0.7882 4.3603 6.1186 42 1 2.8749 5.4913 6.7638 43 1 4.8015 4.1827 7.5537 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457989017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:59 Heat of formation + Delta-G solvation = -48.892403 kcal Electronic energy + Delta-G solvation = -24395.335181 eV Core-core repulsion = 20741.061163 eV Total energy + Delta-G solvation = -3654.274018 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.01993 -39.76751 -38.98543 -36.47668 -35.20406 -33.27651 -31.13102 -30.82848 -30.44265 -28.04177 -25.74401 -25.54394 -24.74775 -23.15014 -22.74991 -20.36597 -19.38027 -18.78985 -17.69204 -16.95432 -16.51302 -16.03756 -15.86835 -15.73762 -15.36520 -14.99509 -14.65676 -14.61464 -14.08196 -13.60508 -13.45179 -13.18773 -12.88795 -12.77517 -12.60891 -12.32761 -12.19135 -11.85848 -11.64407 -11.37969 -11.19844 -10.96807 -10.86634 -10.69888 -10.40893 -10.20908 -10.05688 -9.65404 -9.59124 -9.27669 -9.02588 -8.81829 -8.44556 -8.41481 -8.30796 -6.03909 -4.13197 0.67598 0.94384 2.13945 3.05654 3.27438 3.34977 3.38388 3.39558 3.83302 4.02852 4.39667 4.44111 4.51677 4.69041 4.80942 4.95375 5.02690 5.15967 5.22703 5.34981 5.40985 5.54392 5.69511 5.79650 5.89114 6.00220 6.12608 6.22140 6.32159 6.41097 6.49348 6.52271 6.66237 6.77118 6.80861 6.92513 7.00213 7.03184 7.34127 7.53255 7.68426 7.99870 8.05015 8.14577 8.37861 8.70752 8.87604 9.52404 10.97487 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.002918 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.420638 B = 9594.262056 C =10012.028829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.132 3.868 13 N -0.717 5.717 14 C 0.506 3.494 15 O -0.551 6.551 16 C -0.135 4.135 17 C -0.092 4.092 18 C -0.140 4.140 19 C -0.082 4.082 20 C -0.091 4.091 21 C -0.129 4.129 22 C -0.094 4.094 23 C -0.154 4.154 24 C 0.104 3.896 25 F -0.136 7.136 26 H 0.007 0.993 27 H 0.086 0.914 28 H 0.025 0.975 29 H 0.026 0.974 30 H 0.086 0.914 31 H 0.005 0.995 32 H 0.260 0.740 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.398 0.602 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.280 7.549 19.292 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.368 5.368 14 C 0.292 3.708 15 O -0.430 6.430 16 C -0.174 4.174 17 C -0.110 4.110 18 C -0.158 4.158 19 C -0.083 4.083 20 C -0.109 4.109 21 C -0.147 4.147 22 C -0.112 4.112 23 C -0.173 4.173 24 C 0.084 3.916 25 F -0.114 7.114 26 H 0.026 0.974 27 H 0.105 0.895 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.232 0.768 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.809 6.922 19.205 20.431 hybrid contribution 0.251 -0.259 -0.848 0.921 sum -0.558 6.663 18.358 19.537 Atomic orbital electron populations 1.21818 0.97774 0.98444 1.00892 1.18361 0.92775 0.92786 0.90601 1.21843 0.98589 0.98316 0.99997 1.21004 1.29042 1.14481 0.89957 0.92422 1.24875 0.95028 0.94776 0.98801 1.69814 1.38085 1.21201 1.23244 0.86570 0.78884 0.79971 0.82546 1.20736 1.21287 1.19862 1.21718 0.98126 0.95776 0.83463 1.46307 1.52623 1.31816 1.06020 1.20406 0.80931 0.84788 0.84695 1.90672 1.38581 1.26734 1.86991 1.21298 1.02617 1.01302 0.92190 1.22919 0.95609 1.00051 0.92415 1.21444 1.02022 0.90919 1.01388 1.19151 0.93035 0.94448 1.01624 1.21380 0.98012 0.93782 0.97693 1.21192 0.98446 0.94412 1.00654 1.21071 0.92381 1.00237 0.97537 1.21113 1.00786 0.91952 1.03424 1.17825 0.84134 0.89451 1.00155 1.91496 1.54633 1.78234 1.87068 0.97362 0.89541 0.95584 0.95492 0.89567 0.97585 0.93017 0.92837 0.92738 0.76754 0.87848 0.87512 0.85520 0.85564 0.84372 0.85002 0.85023 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.04 37.16 0.30 -2.62 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.91 8.11 37.16 0.30 -2.61 16 4 C -0.51 -13.26 8.01 -34.44 -0.28 -13.54 16 5 H 0.06 1.53 7.75 -52.49 -0.41 1.13 16 6 C 0.07 1.74 5.11 -17.82 -0.09 1.65 16 7 N -0.88 -23.42 9.38 55.43 0.52 -22.90 16 8 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.13 2.80 4.50 -4.04 -0.02 2.79 16 13 N -0.72 -12.55 4.99 -60.30 -0.30 -12.85 16 14 C 0.51 8.61 7.82 -10.99 -0.09 8.52 16 15 O -0.55 -11.56 16.03 5.56 0.09 -11.47 16 16 C -0.13 -1.61 4.47 -29.04 -0.13 -1.74 16 17 C -0.09 -1.09 8.71 -36.21 -0.32 -1.41 16 18 C -0.14 -1.60 9.45 -37.58 -0.36 -1.95 16 19 C -0.08 -0.91 5.17 -104.95 -0.54 -1.45 16 20 C -0.09 -0.83 7.29 -39.21 -0.29 -1.12 16 21 C -0.13 -1.03 10.03 -39.63 -0.40 -1.43 16 22 C -0.09 -0.76 10.04 -39.51 -0.40 -1.15 16 23 C -0.15 -1.45 10.01 -39.57 -0.40 -1.85 16 24 C 0.10 1.20 7.28 -39.02 -0.28 0.92 16 25 F -0.14 -1.74 16.83 2.25 0.04 -1.70 16 26 H 0.01 0.14 6.99 -51.93 -0.36 -0.22 16 27 H 0.09 2.13 5.95 -51.93 -0.31 1.82 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 2.14 6.10 -51.93 -0.32 1.82 16 31 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 32 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.40 6.15 6.20 -40.82 -0.25 5.90 16 36 H 0.10 0.95 8.03 -51.93 -0.42 0.53 16 37 H 0.11 1.20 4.72 -51.93 -0.24 0.95 16 38 H 0.13 1.51 8.05 -52.48 -0.42 1.08 16 39 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.14 1.03 6.35 -52.48 -0.33 0.70 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 43 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -29.89 352.74 -8.35 -38.24 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.94 Total: 5.49 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -3.05 Total: -15.79 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.22 Total: -35.75 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.89 -8.35 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.648 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds