Wall clock time and date at job start Tue Mar 31 2020 08:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47204 * 2 1 4 4 C 1.50704 * 109.46808 * 239.99970 * 2 1 3 5 5 H 1.07997 * 119.99768 * 236.80754 * 4 2 1 6 6 C 1.37875 * 119.99965 * 56.81725 * 4 2 1 7 7 N 1.31519 * 120.00268 * 6.13174 * 6 4 2 8 8 Si 1.86799 * 119.99991 * 186.13476 * 6 4 2 9 9 H 1.48495 * 109.47501 * 94.99297 * 8 6 4 10 10 H 1.48503 * 109.47146 * 214.99347 * 8 6 4 11 11 H 1.48500 * 109.46919 * 334.99168 * 8 6 4 12 12 C 1.53000 * 109.47088 * 120.00448 * 2 1 3 13 13 N 1.46504 * 109.46752 * 299.99693 * 12 2 1 14 14 C 1.34777 * 119.99811 * 179.97438 * 13 12 2 15 15 O 1.21282 * 120.00133 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99843 * 180.02562 * 14 13 12 17 17 C 1.50699 * 109.47009 * 179.97438 * 16 14 13 18 18 C 1.32582 * 120.00189 * 126.60474 * 17 16 14 19 19 C 1.47790 * 119.99860 * 7.12731 * 18 17 16 20 20 C 1.39527 * 120.15262 * 38.51020 * 19 18 17 21 21 C 1.37951 * 119.88056 * 179.97438 * 20 19 18 22 22 C 1.38380 * 120.19571 * 0.02562 * 21 20 19 23 23 C 1.38278 * 120.31277 * 0.02562 * 22 21 20 24 24 C 1.38238 * 120.11414 * 359.97438 * 23 22 21 25 25 F 1.35101 * 120.09900 * 180.02562 * 24 23 22 26 26 H 1.09001 * 109.46977 * 304.53595 * 1 2 3 27 27 H 1.09003 * 109.47172 * 64.53551 * 1 2 3 28 28 H 1.08995 * 109.47197 * 184.52917 * 1 2 3 29 29 H 1.08994 * 109.47053 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47165 * 300.00292 * 3 2 1 31 31 H 1.09001 * 109.47025 * 60.00131 * 3 2 1 32 32 H 0.96995 * 120.00247 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47199 * 179.97438 * 12 2 1 34 34 H 1.08996 * 109.47052 * 59.99745 * 12 2 1 35 35 H 0.96995 * 120.00232 * 0.02562 * 13 12 2 36 36 H 1.09003 * 109.47324 * 60.00213 * 16 14 13 37 37 H 1.08996 * 109.47357 * 299.99888 * 16 14 13 38 38 H 1.08004 * 120.00199 * 306.60462 * 17 16 14 39 39 H 1.07999 * 120.00095 * 187.12389 * 18 17 16 40 40 H 1.08004 * 120.06517 * 359.97438 * 20 19 18 41 41 H 1.08002 * 119.90210 * 179.97438 * 21 20 19 42 42 H 1.08003 * 119.84363 * 179.72294 * 22 21 20 43 43 H 1.08002 * 119.93908 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6950 -1.5575 -1.1322 6 6 1.6459 -0.2789 -2.4817 7 7 0.9386 0.8227 -2.6080 8 14 2.1270 -1.2588 -3.9975 9 1 1.0212 -2.1802 -4.3629 10 1 2.3896 -0.3290 -5.1253 11 1 3.3526 -2.0462 -3.7094 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8768 -0.4915 3.6695 15 8 2.5733 -1.4782 3.7807 16 6 1.3740 0.2185 4.8999 17 6 1.8754 -0.4926 6.1303 18 6 2.5259 0.1828 7.0676 19 6 2.6229 1.6552 6.9845 20 6 1.5341 2.4053 6.5388 21 6 1.6307 3.7794 6.4639 22 6 2.8041 4.4155 6.8289 23 6 3.8885 3.6800 7.2707 24 6 3.8059 2.3024 7.3508 25 9 4.8653 1.5841 7.7830 26 1 -0.3633 0.5826 0.8466 27 1 -0.3634 0.4419 -0.9279 28 1 -0.3633 -1.0244 0.0811 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.6664 1.1261 -3.4882 33 1 3.1300 -0.7218 1.2490 34 1 1.6766 -1.7490 1.2491 35 1 0.9938 0.7577 2.3564 36 1 0.2840 0.2185 4.8996 37 1 1.7374 1.2462 4.9004 38 1 1.7048 -1.5525 6.2487 39 1 2.9849 -0.3429 7.8918 40 1 0.6173 1.9111 6.2529 41 1 0.7882 4.3603 6.1186 42 1 2.8749 5.4913 6.7638 43 1 4.8015 4.1827 7.5537 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457989017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:58 Heat of formation + Delta-G solvation = -64.459836 kcal Electronic energy + Delta-G solvation = -24396.010235 eV Core-core repulsion = 20741.061163 eV Total energy + Delta-G solvation = -3654.949073 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.89238 -40.92771 -39.96587 -38.16490 -36.13117 -34.98299 -32.81574 -31.56320 -31.37407 -29.06214 -27.54807 -27.38996 -26.40450 -23.98347 -23.46503 -21.71857 -20.63421 -20.18753 -18.72256 -18.10370 -17.66451 -17.37368 -16.93810 -16.79136 -16.53612 -16.45644 -16.18706 -15.50369 -15.23859 -14.89795 -14.76606 -14.32761 -14.27179 -14.06925 -13.96127 -13.36006 -13.24093 -13.11009 -13.03467 -12.79655 -12.62707 -12.59493 -12.34926 -12.24734 -12.13365 -11.73810 -11.47577 -11.27011 -10.98280 -10.76619 -10.66320 -10.36984 -9.92610 -9.75291 -9.22117 -8.03038 -6.17807 -0.06618 0.25655 1.28486 1.41664 1.45253 1.53328 1.72454 2.38885 2.54279 2.72400 3.20264 3.30480 3.63621 3.79116 3.88978 4.01530 4.13991 4.34737 4.39805 4.42271 4.48515 4.51626 4.55676 4.72924 4.77896 4.98153 5.00930 5.07302 5.12179 5.12938 5.18142 5.21049 5.30770 5.38658 5.47046 5.57894 5.61653 5.66516 5.66742 5.68959 5.97472 6.17183 6.22655 6.44714 6.70659 6.86027 7.36257 7.49544 8.95773 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.002918 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.420638 B = 9594.262056 C =10012.028829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.531 4.531 5 H 0.041 0.959 6 C 0.031 3.969 7 N -0.896 5.896 8 Si 0.942 3.058 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.147 3.853 13 N -0.710 5.710 14 C 0.503 3.497 15 O -0.596 6.596 16 C -0.119 4.119 17 C -0.108 4.108 18 C -0.135 4.135 19 C -0.103 4.103 20 C -0.094 4.094 21 C -0.125 4.125 22 C -0.092 4.092 23 C -0.161 4.161 24 C 0.071 3.929 25 F -0.153 7.153 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.018 0.982 29 H 0.014 0.986 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.261 0.739 33 H 0.031 0.969 34 H 0.037 0.963 35 H 0.411 0.589 36 H 0.141 0.859 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 9.520 20.027 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.570 4.570 5 H 0.059 0.941 6 C -0.170 4.170 7 N -0.535 5.535 8 Si 0.769 3.231 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.023 3.977 13 N -0.361 5.361 14 C 0.291 3.709 15 O -0.477 6.477 16 C -0.158 4.158 17 C -0.126 4.126 18 C -0.152 4.152 19 C -0.104 4.104 20 C -0.112 4.112 21 C -0.143 4.143 22 C -0.109 4.109 23 C -0.180 4.180 24 C 0.052 3.948 25 F -0.132 7.132 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.248 0.752 36 H 0.159 0.841 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.175 0.825 41 H 0.180 0.820 42 H 0.178 0.822 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.280 8.920 19.952 21.974 hybrid contribution 0.724 -0.812 -1.021 1.492 sum -1.556 8.108 18.930 20.653 Atomic orbital electron populations 1.21659 0.96802 0.98394 1.01084 1.18360 0.93474 0.92998 0.90133 1.21681 0.97708 0.97839 1.00493 1.21288 1.29311 1.14580 0.91808 0.94058 1.25413 0.95208 0.95564 1.00765 1.69906 1.38264 1.21635 1.23647 0.85791 0.78364 0.78889 0.80029 1.20392 1.20796 1.20314 1.21244 0.96676 0.95150 0.84598 1.46122 1.52798 1.32025 1.05204 1.21320 0.79760 0.84184 0.85611 1.90657 1.40523 1.28938 1.87609 1.21307 1.04715 1.00807 0.88953 1.22887 0.96915 0.99950 0.92840 1.21549 1.00866 0.91617 1.01212 1.19301 0.93840 0.94248 1.03012 1.21663 0.97941 0.94463 0.97136 1.21610 0.99237 0.94151 0.99267 1.21487 0.91741 1.01674 0.96038 1.21385 1.02053 0.91229 1.03289 1.18224 0.84225 0.90481 1.01845 1.91446 1.55442 1.78746 1.87525 0.93921 0.91918 0.96256 0.96724 0.91827 0.94179 0.92974 0.95035 0.94450 0.75170 0.84134 0.86110 0.86096 0.85622 0.82452 0.82021 0.82177 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 8.04 71.98 0.58 -4.65 16 2 C 0.05 2.33 0.50 -52.93 -0.03 2.30 16 3 C -0.12 -5.22 8.11 71.98 0.58 -4.64 16 4 C -0.53 -28.18 8.01 25.60 0.20 -27.98 16 5 H 0.04 2.26 7.75 -2.91 -0.02 2.24 16 6 C 0.03 1.60 5.11 84.65 0.43 2.03 16 7 N -0.90 -47.20 9.38 21.45 0.20 -47.00 16 8 Si 0.94 42.54 29.54 68.60 2.03 44.57 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 C 0.15 6.29 4.50 86.38 0.39 6.68 16 13 N -0.71 -23.60 4.99 -463.06 -2.31 -25.91 16 14 C 0.50 16.43 7.82 87.66 0.69 17.12 16 15 O -0.60 -25.13 16.03 -3.04 -0.05 -25.18 16 16 C -0.12 -2.53 4.47 29.10 0.13 -2.40 16 17 C -0.11 -2.45 8.71 24.53 0.21 -2.23 16 18 C -0.13 -2.99 9.45 23.64 0.22 -2.76 16 19 C -0.10 -2.15 5.17 -20.08 -0.10 -2.26 16 20 C -0.09 -1.42 7.29 22.51 0.16 -1.26 16 21 C -0.12 -1.49 10.03 22.24 0.22 -1.27 16 22 C -0.09 -1.16 10.04 22.31 0.22 -0.93 16 23 C -0.16 -2.76 10.01 22.28 0.22 -2.54 16 24 C 0.07 1.61 7.28 22.63 0.16 1.77 16 25 F -0.15 -4.01 16.83 44.97 0.76 -3.25 16 26 H 0.04 1.49 6.99 -2.39 -0.02 1.48 16 27 H 0.06 3.03 5.95 -2.39 -0.01 3.01 16 28 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 3.10 6.10 -2.39 -0.01 3.08 16 31 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 32 H 0.26 13.21 8.31 -92.71 -0.77 12.43 16 33 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.41 11.33 6.20 -92.71 -0.57 10.75 16 36 H 0.14 1.95 8.03 -2.39 -0.02 1.93 16 37 H 0.12 2.29 4.72 -2.39 -0.01 2.28 16 38 H 0.12 2.85 8.05 -2.91 -0.02 2.83 16 39 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 40 H 0.16 1.67 6.35 -2.91 -0.02 1.66 16 41 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 42 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 43 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -66.23 352.74 5.38 -60.85 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.45 Total: 18.95 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 4.31 Total: -23.02 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -2.11 Total: -72.91 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.05 Total: -25.18 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.76 Total: -3.25 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -66.23 5.38 -60.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.612 kcal (2) G-P(sol) polarization free energy of solvation -66.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds