Wall clock time and date at job start Tue Mar 31 2020 08:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46778 * 2 1 4 4 C 1.50698 * 109.46748 * 240.00263 * 2 1 3 5 5 H 1.08002 * 119.99679 * 239.99820 * 4 2 1 6 6 C 1.37876 * 120.00126 * 60.00241 * 4 2 1 7 7 N 1.31515 * 120.00207 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99901 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47156 * 59.99638 * 8 6 4 10 10 H 1.48503 * 109.47304 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47152 * 299.99889 * 8 6 4 12 12 C 1.52993 * 109.47052 * 119.99898 * 2 1 3 13 13 N 1.46497 * 109.47484 * 300.00083 * 12 2 1 14 14 C 1.34777 * 120.00028 * 179.97438 * 13 12 2 15 15 O 1.21277 * 120.00238 * 5.19361 * 14 13 12 16 16 C 1.50706 * 119.99838 * 185.19673 * 14 13 12 17 17 C 1.50693 * 115.55265 * 65.72386 * 16 14 13 18 18 C 1.38270 * 119.98805 * 30.12503 * 17 16 14 19 19 C 1.38225 * 120.04927 * 179.72600 * 18 17 16 20 20 C 1.38217 * 120.02661 * 0.30070 * 19 18 17 21 21 C 1.38433 * 119.97692 * 359.97438 * 20 19 18 22 22 F 1.35102 * 120.02790 * 180.02562 * 21 20 19 23 23 C 1.38178 * 119.98599 * 210.40643 * 17 16 14 24 24 C 1.53001 * 117.49599 * 211.39268 * 16 14 13 25 25 C 1.53000 * 117.49570 * 280.04714 * 16 14 13 26 26 H 1.08998 * 109.47030 * 300.00273 * 1 2 3 27 27 H 1.09004 * 109.47301 * 59.99756 * 1 2 3 28 28 H 1.08996 * 109.47290 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46813 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47489 * 299.99578 * 3 2 1 31 31 H 1.08997 * 109.47211 * 60.00465 * 3 2 1 32 32 H 0.96998 * 119.99897 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47163 * 179.97438 * 12 2 1 34 34 H 1.09008 * 109.46941 * 60.00368 * 12 2 1 35 35 H 0.96998 * 120.00450 * 0.02562 * 13 12 2 36 36 H 1.07999 * 119.97536 * 0.02562 * 18 17 16 37 37 H 1.08004 * 119.98592 * 180.27919 * 19 18 17 38 38 H 1.08006 * 120.01277 * 180.02562 * 20 19 18 39 39 H 1.07992 * 120.01704 * 359.97438 * 23 17 16 40 40 H 1.08997 * 117.50002 * 215.00361 * 24 16 14 41 41 H 1.09000 * 117.49908 * 0.02562 * 24 16 14 42 42 H 1.08999 * 117.50118 * 359.97438 * 25 16 14 43 43 H 1.09006 * 117.49388 * 144.97393 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8278 -0.4190 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6695 15 8 2.6491 -1.4197 3.7826 16 6 1.2808 0.1468 4.8977 17 6 -0.2088 -0.0161 5.0570 18 6 -0.8389 -1.1395 4.5540 19 6 -2.2043 -1.2929 4.7043 20 6 -2.9424 -0.3203 5.3523 21 6 -2.3136 0.8075 5.8513 22 9 -3.0339 1.7585 6.4852 23 6 -0.9454 0.9599 5.7005 24 6 2.1302 0.1591 6.1703 25 6 1.9049 1.4550 5.3875 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7081 1.1610 -3.4844 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7490 1.2492 35 1 0.9937 0.7578 2.3565 36 1 -0.2630 -1.8999 4.0475 37 1 -2.6948 -2.1729 4.3150 38 1 -4.0093 -0.4406 5.4700 39 1 -0.4537 1.8392 6.0896 40 1 1.6115 0.0493 7.1226 41 1 3.1202 -0.2940 6.1190 42 1 2.7468 1.8539 4.8217 43 1 1.2378 2.1982 5.8245 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457993498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:37 Heat of formation + Delta-G solvation = -53.041110 kcal Electronic energy + Delta-G solvation = -25188.135459 eV Core-core repulsion = 21533.681540 eV Total energy + Delta-G solvation = -3654.453920 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.89140 -41.59788 -39.83921 -38.30127 -37.22451 -34.99551 -32.72217 -31.75388 -31.48173 -27.77627 -27.57515 -27.16621 -25.35909 -23.88362 -23.29013 -22.94151 -20.82570 -20.57656 -19.14342 -17.92272 -17.58641 -17.16229 -17.07460 -16.76455 -16.59699 -16.51034 -16.26590 -15.60340 -15.18328 -14.93427 -14.77808 -14.32808 -14.17771 -14.05027 -13.75629 -13.57399 -13.19889 -13.09631 -12.83580 -12.68337 -12.65104 -12.59772 -12.26436 -12.15971 -12.13261 -11.75721 -11.59990 -11.49207 -11.25160 -10.85014 -10.69058 -10.39760 -9.97479 -9.90854 -9.61185 -8.02041 -6.18065 0.10104 0.19348 1.44187 1.45567 1.51575 1.52280 2.19321 2.41457 2.48043 2.91312 3.16483 3.21622 3.42647 3.65999 3.71742 3.91907 3.99600 4.10453 4.17272 4.38101 4.41026 4.49610 4.57654 4.67932 4.70503 4.90688 4.92381 4.97724 5.02716 5.04677 5.09386 5.11397 5.17302 5.18194 5.31197 5.35227 5.46891 5.56547 5.66233 5.66875 5.87698 6.13617 6.20740 6.42794 6.62014 6.85774 7.24333 7.49741 8.96651 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017702 B = 0.003763 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.370689 B = 7438.990818 C = 8133.858398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.053 3.947 3 C -0.120 4.120 4 C -0.529 4.529 5 H 0.045 0.955 6 C 0.030 3.970 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.148 3.852 13 N -0.701 5.701 14 C 0.546 3.454 15 O -0.584 6.584 16 C -0.142 4.142 17 C -0.014 4.014 18 C -0.134 4.134 19 C -0.083 4.083 20 C -0.154 4.154 21 C 0.091 3.909 22 F -0.143 7.143 23 C -0.148 4.148 24 C -0.127 4.127 25 C -0.137 4.137 26 H 0.032 0.968 27 H 0.062 0.938 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.260 0.740 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.407 0.593 36 H 0.109 0.891 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.126 0.874 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.276 2.662 18.035 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.568 4.568 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.024 3.976 13 N -0.351 5.351 14 C 0.333 3.667 15 O -0.465 6.465 16 C -0.145 4.145 17 C -0.014 4.014 18 C -0.152 4.152 19 C -0.101 4.101 20 C -0.173 4.173 21 C 0.072 3.928 22 F -0.122 7.122 23 C -0.166 4.166 24 C -0.164 4.164 25 C -0.174 4.174 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.244 0.756 36 H 0.127 0.873 37 H 0.171 0.829 38 H 0.174 0.826 39 H 0.176 0.824 40 H 0.144 0.856 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.854 2.154 17.952 19.005 hybrid contribution 0.129 -0.274 -1.314 1.348 sum -5.726 1.880 16.639 17.696 Atomic orbital electron populations 1.21642 0.97130 0.98624 1.00158 1.18335 0.93190 0.92975 0.90280 1.21662 0.97908 0.97910 1.00285 1.21230 1.31825 1.12219 0.91527 0.93704 1.25435 0.95099 0.95553 1.00916 1.69901 1.36883 1.23273 1.23661 0.85838 0.78621 0.78842 0.79625 1.20227 1.20852 1.20293 1.21306 0.97102 0.95031 0.84155 1.46078 1.52304 1.31609 1.05096 1.19800 0.80196 0.82448 0.84274 1.90653 1.37462 1.31129 1.87265 1.20064 0.91978 1.06918 0.95529 1.18494 0.91247 0.94142 0.97563 1.21136 0.95752 0.97667 1.00634 1.21203 0.92856 0.99358 0.96635 1.21412 1.02172 0.93312 1.00361 1.17742 0.89757 0.87910 0.97422 1.91496 1.77877 1.62984 1.79805 1.21061 0.92062 1.00983 1.02517 1.23166 1.00099 0.99714 0.93387 1.23393 1.02578 0.89877 1.01562 0.94904 0.91931 0.96215 0.96269 0.91895 0.94691 0.93025 0.94252 0.94182 0.75608 0.87314 0.82909 0.82594 0.82380 0.85608 0.88496 0.87732 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 2 C 0.05 2.43 0.50 -52.93 -0.03 2.40 16 3 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 4 C -0.53 -27.80 8.01 25.60 0.21 -27.60 16 5 H 0.04 2.40 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.56 5.15 84.65 0.44 2.00 16 7 N -0.90 -47.67 9.35 21.45 0.20 -47.47 16 8 Si 0.94 42.32 29.54 68.60 2.03 44.35 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.15 6.24 4.51 86.38 0.39 6.63 16 13 N -0.70 -24.26 4.96 -463.06 -2.29 -26.56 16 14 C 0.55 18.34 5.91 87.66 0.52 18.86 16 15 O -0.58 -24.21 16.71 -3.02 -0.05 -24.26 16 16 C -0.14 -3.45 2.36 -53.67 -0.13 -3.57 16 17 C -0.01 -0.32 5.48 -19.87 -0.11 -0.43 16 18 C -0.13 -3.27 9.32 22.27 0.21 -3.07 16 19 C -0.08 -1.64 10.04 22.26 0.22 -1.42 16 20 C -0.15 -2.83 10.03 22.31 0.22 -2.60 16 21 C 0.09 1.81 7.30 22.38 0.16 1.98 16 22 F -0.14 -2.95 17.27 44.97 0.78 -2.17 16 23 C -0.15 -2.84 9.34 22.32 0.21 -2.64 16 24 C -0.13 -2.50 9.73 30.62 0.30 -2.20 16 25 C -0.14 -2.42 9.57 30.62 0.29 -2.13 16 26 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 27 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 31 H 0.03 1.30 6.86 -2.39 -0.02 1.29 16 32 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.41 12.85 6.17 -92.71 -0.57 12.27 16 36 H 0.11 3.09 7.34 -2.91 -0.02 3.06 16 37 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.16 2.27 5.94 -2.91 -0.02 2.26 16 40 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.10 2.18 8.00 -2.39 -0.02 2.17 16 42 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.14 1.62 6.10 -2.38 -0.01 1.60 16 Total: -1.00 -61.00 353.00 5.18 -55.81 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.46 Total: 23.45 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 4.07 Total: -23.15 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -2.09 Total: -74.03 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.05 Total: -24.26 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -61.00 5.18 -55.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.771 kcal (2) G-P(sol) polarization free energy of solvation -60.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds