Wall clock time and date at job start Tue Mar 31 2020 08:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47145 * 2 1 4 4 H 1.08995 * 109.60469 * 303.10531 * 3 2 1 5 5 C 1.53380 * 109.60203 * 63.59991 * 3 2 1 6 6 C 1.53046 * 107.91875 * 188.02158 * 5 3 2 7 7 C 1.50806 * 109.64838 * 312.68456 * 6 5 3 8 8 C 1.38612 * 118.12318 * 195.49402 * 7 6 5 9 9 C 1.38048 * 120.49079 * 180.28406 * 8 7 6 10 10 C 1.38315 * 119.88672 * 0.02562 * 9 8 7 11 11 C 1.37811 * 119.94985 * 359.85772 * 10 9 8 12 12 C 1.38374 * 122.01221 * 15.53366 * 7 6 5 13 13 N 1.39407 * 122.96934 * 359.51946 * 12 7 6 14 14 C 1.46896 * 110.99720 * 145.49591 * 13 12 7 15 15 C 1.52995 * 109.47191 * 299.00155 * 14 13 12 16 16 C 1.52999 * 109.47042 * 174.92606 * 15 14 13 17 17 S 1.81004 * 109.47148 * 180.02562 * 16 15 14 18 18 C 1.76198 * 99.99986 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00486 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00116 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00202 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99806 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47085 * 90.00104 * 22 20 18 24 24 H 1.48505 * 109.47500 * 210.00335 * 22 20 18 25 25 H 1.48500 * 109.47380 * 330.00287 * 22 20 18 26 26 H 1.08994 * 109.47350 * 53.76565 * 1 2 3 27 27 H 1.09007 * 109.47210 * 173.76786 * 1 2 3 28 28 H 1.08999 * 109.46987 * 293.76283 * 1 2 3 29 29 H 1.08998 * 109.47380 * 240.00324 * 2 1 3 30 30 H 1.08999 * 109.47641 * 120.00349 * 2 1 3 31 31 H 1.08997 * 109.77149 * 307.62905 * 5 3 2 32 32 H 1.09005 * 109.77233 * 68.41623 * 5 3 2 33 33 H 1.09007 * 109.44115 * 72.73301 * 6 5 3 34 34 H 1.09002 * 109.44294 * 192.62551 * 6 5 3 35 35 H 1.08002 * 119.75466 * 0.26332 * 8 7 6 36 36 H 1.08001 * 120.05728 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.02644 * 179.83402 * 10 9 8 38 38 H 1.08004 * 119.78426 * 180.02562 * 11 10 9 39 39 H 1.09002 * 109.46745 * 179.00424 * 14 13 12 40 40 H 1.09002 * 109.47540 * 59.00731 * 14 13 12 41 41 H 1.08996 * 109.47112 * 54.92495 * 15 14 13 42 42 H 1.09000 * 109.47558 * 294.92282 * 15 14 13 43 43 H 1.09001 * 109.47347 * 299.99872 * 16 15 14 44 44 H 1.08996 * 109.47258 * 59.99977 * 16 15 14 45 45 H 0.96998 * 119.99648 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6331 1.9743 -0.8601 5 6 1.6058 2.1418 1.2942 6 6 1.9565 3.6262 1.1679 7 6 3.3697 3.7721 0.6623 8 6 3.9845 5.0080 0.7885 9 6 5.2752 5.1977 0.3369 10 6 5.9623 4.1488 -0.2467 11 6 5.3585 2.9165 -0.3734 12 6 4.0545 2.7177 0.0843 13 7 3.5026 1.4465 -0.0668 14 6 3.9749 0.8113 -1.3043 15 6 3.5470 1.6555 -2.5063 16 6 4.1453 1.0637 -3.7840 17 16 3.6396 2.0629 -5.2061 18 6 4.4459 1.1816 -6.5014 19 1 5.0334 0.3046 -6.2736 20 6 4.3259 1.6147 -7.8147 21 7 4.9278 0.9560 -8.7825 22 14 3.3092 3.1312 -8.2089 23 1 4.1752 4.3362 -8.1523 24 1 2.7319 3.0001 -9.5708 25 1 2.2120 3.2633 -7.2169 26 1 -0.3634 0.6074 -0.8289 27 1 -0.3634 -1.0216 -0.1116 28 1 -0.3633 0.4141 0.9405 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 0.5306 2.0274 1.4323 32 1 2.1353 1.7088 2.1429 33 1 1.2699 4.1029 0.4682 34 1 1.8690 4.1040 2.1437 35 1 3.4497 5.8288 1.2432 36 1 5.7473 6.1638 0.4384 37 1 6.9711 4.2954 -0.6032 38 1 5.8976 2.0992 -0.8292 39 1 3.5430 -0.1859 -1.3884 40 1 5.0621 0.7356 -1.2819 41 1 3.9033 2.6776 -2.3778 42 1 2.4595 1.6566 -2.5810 43 1 5.2327 1.0627 -3.7095 44 1 3.7889 0.0417 -3.9126 45 1 4.8436 1.2584 -9.7003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000482987501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:06 Heat of formation + Delta-G solvation = 8.674323 kcal Electronic energy + Delta-G solvation = -23047.674188 eV Core-core repulsion = 19962.109626 eV Total energy + Delta-G solvation = -3085.564562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.96978 -37.55783 -35.46201 -33.25260 -32.45141 -32.23938 -29.74950 -29.24139 -26.46865 -25.64695 -24.69434 -23.63849 -22.45630 -21.39467 -20.83340 -19.15313 -17.50013 -17.16717 -16.45145 -15.64387 -15.14730 -14.99704 -14.85746 -14.49067 -14.24440 -14.03770 -13.87872 -13.62253 -13.30959 -13.03443 -12.84996 -12.54585 -12.27118 -12.15673 -12.02168 -11.83639 -11.60723 -11.40554 -11.15690 -11.14967 -11.10688 -11.00714 -10.82847 -10.48541 -10.28845 -10.22119 -9.88147 -9.59224 -9.01323 -8.67887 -8.57578 -7.58316 -6.95319 -6.29280 -4.01445 1.43398 1.47170 3.00055 3.29249 3.44372 3.52171 3.59765 3.92584 4.30749 4.46996 4.60342 4.70053 4.77706 4.85569 4.98538 5.05725 5.09520 5.12060 5.16681 5.20045 5.29792 5.34721 5.40380 5.43892 5.47089 5.51713 5.58978 5.70454 5.73371 5.74021 5.79621 5.87770 5.94838 5.97846 6.05591 6.11412 6.13484 6.21704 6.30126 6.38193 6.49583 6.58989 6.63730 6.82623 7.08094 7.36604 7.94590 8.43336 9.16864 10.80269 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.004078 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.618875 B = 6864.801886 C = 7847.981422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.084 3.916 4 H 0.060 0.940 5 C -0.117 4.117 6 C -0.077 4.077 7 C -0.131 4.131 8 C -0.095 4.095 9 C -0.153 4.153 10 C -0.094 4.094 11 C -0.155 4.155 12 C 0.138 3.862 13 N -0.488 5.488 14 C 0.052 3.948 15 C -0.135 4.135 16 C -0.077 4.077 17 S -0.216 6.216 18 C -0.502 4.502 19 H 0.088 0.912 20 C 0.093 3.907 21 N -0.882 5.882 22 Si 0.861 3.139 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.239 1.239 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.694 3.506 22.577 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.023 4.023 4 H 0.078 0.922 5 C -0.155 4.155 6 C -0.114 4.114 7 C -0.134 4.134 8 C -0.114 4.114 9 C -0.172 4.172 10 C -0.113 4.113 11 C -0.176 4.176 12 C 0.039 3.961 13 N -0.200 5.200 14 C -0.075 4.075 15 C -0.174 4.174 16 C -0.226 4.226 17 S 0.012 5.988 18 C -0.649 4.649 19 H 0.106 0.894 20 C -0.116 4.116 21 N -0.519 5.519 22 Si 0.686 3.314 23 H -0.194 1.194 24 H -0.201 1.201 25 H -0.163 1.163 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.197 4.040 22.690 23.866 hybrid contribution 0.371 -0.044 -1.075 1.138 sum -5.825 3.997 21.615 22.741 Atomic orbital electron populations 1.21791 0.95271 1.01963 1.01900 1.21622 0.95865 0.95300 1.02987 1.21764 0.85319 0.97031 0.98192 0.92183 1.21804 1.01457 0.94684 0.97558 1.20507 0.92942 0.96969 1.00997 1.19472 0.96360 0.92866 1.04687 1.20884 0.95051 0.95965 0.99484 1.20933 0.95317 0.99032 1.01956 1.20940 0.99677 0.92790 0.97885 1.21190 0.94582 0.98343 1.03460 1.18517 0.93626 0.87530 0.96413 1.58354 1.09426 1.17200 1.35006 1.22510 1.01523 0.98258 0.85190 1.21980 1.01353 1.00471 0.93621 1.22941 1.02423 1.01534 0.95709 1.84200 1.69783 1.42889 1.01972 1.22120 1.35632 1.15576 0.91600 0.89417 1.24781 0.94779 0.96874 0.95118 1.69938 1.42082 1.39530 1.00323 0.86686 0.82220 0.83240 0.79301 1.19362 1.20081 1.16258 0.92485 0.92420 0.92543 0.91170 0.91171 0.90414 0.90821 0.90962 0.90811 0.86491 0.86476 0.86128 0.85544 0.89470 0.89659 0.90843 0.91472 0.91405 0.91407 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.49 37.15 0.35 -0.91 16 2 C -0.12 -1.15 5.32 -26.73 -0.14 -1.30 16 3 C 0.08 0.91 1.59 -67.77 -0.11 0.80 16 4 H 0.06 0.75 6.49 -51.93 -0.34 0.41 16 5 C -0.12 -1.10 5.36 -26.51 -0.14 -1.24 16 6 C -0.08 -0.76 5.81 -27.81 -0.16 -0.92 16 7 C -0.13 -1.60 5.74 -104.38 -0.60 -2.20 16 8 C -0.10 -1.09 9.63 -39.51 -0.38 -1.47 16 9 C -0.15 -1.78 10.05 -39.62 -0.40 -2.18 16 10 C -0.09 -1.17 10.04 -39.71 -0.40 -1.57 16 11 C -0.16 -2.06 7.95 -39.22 -0.31 -2.38 16 12 C 0.14 1.82 4.80 -83.85 -0.40 1.42 16 13 N -0.49 -6.02 4.50 -163.73 -0.74 -6.75 16 14 C 0.05 0.67 4.63 -3.83 -0.02 0.65 16 15 C -0.13 -2.10 4.54 -26.73 -0.12 -2.22 16 16 C -0.08 -1.48 5.67 37.16 0.21 -1.27 16 17 S -0.22 -5.31 19.41 -107.50 -2.09 -7.40 16 18 C -0.50 -14.62 10.04 30.94 0.31 -14.31 16 19 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 20 C 0.09 2.72 5.50 -17.43 -0.10 2.63 16 21 N -0.88 -26.85 13.97 55.49 0.78 -26.08 16 22 Si 0.86 21.74 27.74 -169.99 -4.71 17.02 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.41 6.69 -51.93 -0.35 0.06 16 29 H 0.07 0.73 6.18 -51.93 -0.32 0.41 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.60 6.36 -51.93 -0.33 0.27 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.13 1.62 5.87 -52.48 -0.31 1.31 16 39 H 0.09 1.04 6.00 -51.93 -0.31 0.73 16 40 H 0.09 1.07 6.02 -51.93 -0.31 0.76 16 41 H 0.07 1.24 6.33 -51.93 -0.33 0.92 16 42 H 0.07 1.07 6.77 -51.93 -0.35 0.72 16 43 H 0.07 1.31 8.14 -51.91 -0.42 0.88 16 44 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 45 H 0.27 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -31.27 355.11 -10.99 -42.26 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.18 Total: 2.05 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: -2.41 Total: -26.46 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.04 Total: -32.83 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.02 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -2.09 Total: -7.40 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.27 -10.99 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000482987501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.936 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds