Wall clock time and date at job start Tue Mar 31 2020 08:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47145 * 2 1 4 4 H 1.08995 * 109.60469 * 303.10531 * 3 2 1 5 5 C 1.53380 * 109.60203 * 63.59991 * 3 2 1 6 6 C 1.53046 * 107.91875 * 188.02158 * 5 3 2 7 7 C 1.50806 * 109.64838 * 312.68456 * 6 5 3 8 8 C 1.38612 * 118.12318 * 195.49402 * 7 6 5 9 9 C 1.38048 * 120.49079 * 180.28406 * 8 7 6 10 10 C 1.38315 * 119.88672 * 0.02562 * 9 8 7 11 11 C 1.37811 * 119.94985 * 359.85772 * 10 9 8 12 12 C 1.38374 * 122.01221 * 15.53366 * 7 6 5 13 13 N 1.39407 * 122.96934 * 359.51946 * 12 7 6 14 14 C 1.46896 * 110.99720 * 145.49591 * 13 12 7 15 15 C 1.52995 * 109.47191 * 299.00155 * 14 13 12 16 16 C 1.52999 * 109.47042 * 174.92606 * 15 14 13 17 17 S 1.81004 * 109.47148 * 180.02562 * 16 15 14 18 18 C 1.76198 * 99.99986 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00486 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00116 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00202 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99806 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47085 * 90.00104 * 22 20 18 24 24 H 1.48505 * 109.47500 * 210.00335 * 22 20 18 25 25 H 1.48500 * 109.47380 * 330.00287 * 22 20 18 26 26 H 1.08994 * 109.47350 * 53.76565 * 1 2 3 27 27 H 1.09007 * 109.47210 * 173.76786 * 1 2 3 28 28 H 1.08999 * 109.46987 * 293.76283 * 1 2 3 29 29 H 1.08998 * 109.47380 * 240.00324 * 2 1 3 30 30 H 1.08999 * 109.47641 * 120.00349 * 2 1 3 31 31 H 1.08997 * 109.77149 * 307.62905 * 5 3 2 32 32 H 1.09005 * 109.77233 * 68.41623 * 5 3 2 33 33 H 1.09007 * 109.44115 * 72.73301 * 6 5 3 34 34 H 1.09002 * 109.44294 * 192.62551 * 6 5 3 35 35 H 1.08002 * 119.75466 * 0.26332 * 8 7 6 36 36 H 1.08001 * 120.05728 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.02644 * 179.83402 * 10 9 8 38 38 H 1.08004 * 119.78426 * 180.02562 * 11 10 9 39 39 H 1.09002 * 109.46745 * 179.00424 * 14 13 12 40 40 H 1.09002 * 109.47540 * 59.00731 * 14 13 12 41 41 H 1.08996 * 109.47112 * 54.92495 * 15 14 13 42 42 H 1.09000 * 109.47558 * 294.92282 * 15 14 13 43 43 H 1.09001 * 109.47347 * 299.99872 * 16 15 14 44 44 H 1.08996 * 109.47258 * 59.99977 * 16 15 14 45 45 H 0.96998 * 119.99648 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6331 1.9743 -0.8601 5 6 1.6058 2.1418 1.2942 6 6 1.9565 3.6262 1.1679 7 6 3.3697 3.7721 0.6623 8 6 3.9845 5.0080 0.7885 9 6 5.2752 5.1977 0.3369 10 6 5.9623 4.1488 -0.2467 11 6 5.3585 2.9165 -0.3734 12 6 4.0545 2.7177 0.0843 13 7 3.5026 1.4465 -0.0668 14 6 3.9749 0.8113 -1.3043 15 6 3.5470 1.6555 -2.5063 16 6 4.1453 1.0637 -3.7840 17 16 3.6396 2.0629 -5.2061 18 6 4.4459 1.1816 -6.5014 19 1 5.0334 0.3046 -6.2736 20 6 4.3259 1.6147 -7.8147 21 7 4.9278 0.9560 -8.7825 22 14 3.3092 3.1312 -8.2089 23 1 4.1752 4.3362 -8.1523 24 1 2.7319 3.0001 -9.5708 25 1 2.2120 3.2633 -7.2169 26 1 -0.3634 0.6074 -0.8289 27 1 -0.3634 -1.0216 -0.1116 28 1 -0.3633 0.4141 0.9405 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 0.5306 2.0274 1.4323 32 1 2.1353 1.7088 2.1429 33 1 1.2699 4.1029 0.4682 34 1 1.8690 4.1040 2.1437 35 1 3.4497 5.8288 1.2432 36 1 5.7473 6.1638 0.4384 37 1 6.9711 4.2954 -0.6032 38 1 5.8976 2.0992 -0.8292 39 1 3.5430 -0.1859 -1.3884 40 1 5.0621 0.7356 -1.2819 41 1 3.9033 2.6776 -2.3778 42 1 2.4595 1.6566 -2.5810 43 1 5.2327 1.0627 -3.7095 44 1 3.7889 0.0417 -3.9126 45 1 4.8436 1.2584 -9.7003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000482987501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:06 Heat of formation + Delta-G solvation = -7.425841 kcal Electronic energy + Delta-G solvation = -23048.372343 eV Core-core repulsion = 19962.109626 eV Total energy + Delta-G solvation = -3086.262717 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.88337 -38.45590 -36.43185 -34.70851 -34.04222 -33.46805 -30.65618 -30.06990 -28.07242 -27.40999 -25.56004 -24.52347 -23.65407 -22.25025 -21.81332 -20.08938 -19.60223 -18.12447 -17.39955 -17.12535 -16.62330 -16.32108 -16.01166 -15.58236 -15.31687 -15.07041 -14.95050 -14.83888 -14.63061 -14.25597 -13.91559 -13.62220 -13.52979 -13.34766 -13.10518 -12.97062 -12.84543 -12.79504 -12.59867 -12.36807 -12.20838 -12.02993 -11.93096 -11.87091 -11.57483 -11.28734 -11.19560 -11.12676 -10.71077 -10.55110 -9.58728 -9.02556 -8.54819 -8.53981 -6.25694 0.51389 0.53677 1.09495 1.28879 1.44303 1.71424 2.21988 2.61647 2.66530 2.83921 3.00731 3.64359 3.73633 3.81745 3.95004 4.01878 4.05268 4.20331 4.23770 4.32143 4.33615 4.37404 4.39722 4.48656 4.62618 4.64940 4.66533 4.71355 4.76141 4.81830 4.94127 4.98783 5.01668 5.04840 5.13396 5.19953 5.22940 5.29318 5.30837 5.39813 5.48805 5.60019 5.67739 5.71962 5.92209 6.07923 6.14856 6.43526 6.90123 8.58950 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.004078 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.618875 B = 6864.801886 C = 7847.981422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.081 3.919 4 H 0.044 0.956 5 C -0.112 4.112 6 C -0.077 4.077 7 C -0.142 4.142 8 C -0.101 4.101 9 C -0.158 4.158 10 C -0.109 4.109 11 C -0.174 4.174 12 C 0.119 3.881 13 N -0.486 5.486 14 C 0.060 3.940 15 C -0.116 4.116 16 C -0.063 4.063 17 S -0.225 6.225 18 C -0.521 4.521 19 H 0.051 0.949 20 C 0.041 3.959 21 N -0.921 5.921 22 Si 0.923 3.077 23 H -0.263 1.263 24 H -0.261 1.261 25 H -0.231 1.231 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.305 4.833 24.400 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.026 4.026 4 H 0.062 0.938 5 C -0.149 4.149 6 C -0.114 4.114 7 C -0.145 4.145 8 C -0.120 4.120 9 C -0.177 4.177 10 C -0.127 4.127 11 C -0.195 4.195 12 C 0.020 3.980 13 N -0.198 5.198 14 C -0.067 4.067 15 C -0.156 4.156 16 C -0.212 4.212 17 S 0.003 5.997 18 C -0.668 4.668 19 H 0.070 0.930 20 C -0.164 4.164 21 N -0.559 5.559 22 Si 0.744 3.256 23 H -0.187 1.187 24 H -0.185 1.185 25 H -0.155 1.155 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.140 0.860 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.806 5.363 24.526 26.291 hybrid contribution 0.948 -0.500 -1.552 1.886 sum -6.858 4.863 22.974 24.464 Atomic orbital electron populations 1.21776 0.94118 1.02352 1.02385 1.21599 0.96824 0.94338 1.02671 1.21859 0.84353 0.97850 0.98502 0.93820 1.21798 1.02629 0.94152 0.96350 1.20576 0.91456 0.97461 1.01903 1.19856 0.97552 0.92836 1.04238 1.21235 0.95161 0.96454 0.99105 1.21254 0.95569 0.99662 1.01260 1.21186 1.00425 0.92880 0.98254 1.21317 0.95089 0.98789 1.04290 1.18718 0.93842 0.88207 0.97234 1.58438 1.10309 1.17078 1.33960 1.22407 1.01767 0.98192 0.84371 1.21817 1.00867 1.00095 0.92783 1.22993 1.02509 1.00906 0.94810 1.83923 1.69463 1.43685 1.02598 1.22319 1.35740 1.15106 0.93676 0.93026 1.25726 0.95837 0.99952 0.94882 1.70033 1.43485 1.41375 1.01037 0.85752 0.80816 0.79224 0.79790 1.18725 1.18523 1.15500 0.93205 0.91853 0.91093 0.92220 0.90707 0.88376 0.91047 0.90682 0.88952 0.84136 0.84445 0.85129 0.85974 0.88335 0.89519 0.91995 0.91545 0.91589 0.91148 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.49 71.98 0.68 -1.47 16 2 C -0.12 -2.05 5.32 30.59 0.16 -1.89 16 3 C 0.08 1.64 1.59 45.14 0.07 1.71 16 4 H 0.04 1.04 6.49 -2.39 -0.02 1.02 16 5 C -0.11 -1.83 5.36 30.74 0.16 -1.66 16 6 C -0.08 -1.32 5.81 29.90 0.17 -1.15 16 7 C -0.14 -3.23 5.74 -19.71 -0.11 -3.34 16 8 C -0.10 -2.12 9.63 22.31 0.21 -1.90 16 9 C -0.16 -3.43 10.05 22.24 0.22 -3.20 16 10 C -0.11 -2.63 10.04 22.19 0.22 -2.41 16 11 C -0.17 -4.60 7.95 22.50 0.18 -4.42 16 12 C 0.12 3.03 4.80 38.30 0.18 3.21 16 13 N -0.49 -11.50 4.50 -671.94 -3.03 -14.52 16 14 C 0.06 1.50 4.63 86.30 0.40 1.90 16 15 C -0.12 -3.56 4.54 30.59 0.14 -3.42 16 16 C -0.06 -2.44 5.67 71.98 0.41 -2.03 16 17 S -0.22 -11.02 19.41 -56.49 -1.10 -12.12 16 18 C -0.52 -31.04 10.04 67.96 0.68 -30.36 16 19 H 0.05 3.33 8.03 -2.91 -0.02 3.31 16 20 C 0.04 2.42 5.50 84.86 0.47 2.89 16 21 N -0.92 -57.06 13.97 21.65 0.30 -56.76 16 22 Si 0.92 44.69 27.74 68.60 1.90 46.59 16 23 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.23 -10.86 6.74 99.48 0.67 -10.19 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.07 0.82 6.69 -2.39 -0.02 0.80 16 29 H 0.06 1.16 6.18 -2.39 -0.01 1.15 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.10 1.20 6.36 -2.39 -0.02 1.18 16 32 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 36 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.12 3.18 5.87 -2.91 -0.02 3.16 16 39 H 0.10 2.25 6.00 -2.39 -0.01 2.23 16 40 H 0.09 2.15 6.02 -2.39 -0.01 2.14 16 41 H 0.06 2.08 6.33 -2.39 -0.02 2.06 16 42 H 0.07 2.06 6.77 -2.39 -0.02 2.05 16 43 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 44 H 0.07 2.69 8.14 -2.40 -0.02 2.67 16 45 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -67.65 355.11 3.27 -64.38 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.93 Total: 19.98 kcal Atomic # 6 Polarization: -51.81 SS G_CDS: 4.26 Total: -47.54 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -2.72 Total: -71.28 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.59 kcal Atomic # 16 Polarization: -11.02 SS G_CDS: -1.10 Total: -12.12 kcal Total: -67.65 3.27 -64.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000482987501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.954 kcal (2) G-P(sol) polarization free energy of solvation -67.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds