Wall clock time and date at job start Tue Mar 31 2020 08:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46822 * 2 1 4 4 H 1.09001 * 109.74072 * 300.60357 * 3 2 1 5 5 C 1.53382 * 109.60054 * 180.19295 * 3 2 1 6 6 C 1.53045 * 107.93180 * 172.01636 * 5 3 2 7 7 C 1.50808 * 109.65361 * 47.30370 * 6 5 3 8 8 C 1.38617 * 118.11712 * 164.51701 * 7 6 5 9 9 C 1.38056 * 120.48266 * 179.58398 * 8 7 6 10 10 C 1.38316 * 119.88968 * 0.04888 * 9 8 7 11 11 C 1.37811 * 119.94966 * 0.12144 * 10 9 8 12 12 C 1.38368 * 122.01640 * 344.34152 * 7 6 5 13 13 N 1.39406 * 122.95825 * 0.74005 * 12 7 6 14 14 C 1.46900 * 110.99974 * 105.38356 * 13 12 7 15 15 C 1.53001 * 109.46861 * 65.54310 * 14 13 12 16 16 C 1.53005 * 109.46945 * 174.15739 * 15 14 13 17 17 S 1.81007 * 109.46983 * 180.02562 * 16 15 14 18 18 C 1.76194 * 99.99727 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00313 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00152 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99662 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00457 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47137 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47361 * 120.00303 * 22 20 18 25 25 H 1.48506 * 109.47233 * 240.00071 * 22 20 18 26 26 H 1.09000 * 109.47266 * 299.99873 * 1 2 3 27 27 H 1.09003 * 109.47494 * 60.00334 * 1 2 3 28 28 H 1.09005 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46858 * 239.99776 * 2 1 3 30 30 H 1.08994 * 109.46971 * 119.99967 * 2 1 3 31 31 H 1.09003 * 109.76829 * 291.62499 * 5 3 2 32 32 H 1.09003 * 109.76998 * 52.40597 * 5 3 2 33 33 H 1.08997 * 109.44510 * 167.36271 * 6 5 3 34 34 H 1.09002 * 109.44194 * 287.25388 * 6 5 3 35 35 H 1.07996 * 119.75838 * 359.60334 * 8 7 6 36 36 H 1.07998 * 120.05138 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.02054 * 180.13996 * 10 9 8 38 38 H 1.08004 * 119.78273 * 180.18366 * 11 10 9 39 39 H 1.09001 * 109.47526 * 185.54570 * 14 13 12 40 40 H 1.09004 * 109.47233 * 305.54773 * 14 13 12 41 41 H 1.09002 * 109.47400 * 294.15168 * 15 14 13 42 42 H 1.09001 * 109.47032 * 54.15939 * 15 14 13 43 43 H 1.09002 * 109.46605 * 299.99915 * 16 15 14 44 44 H 1.08994 * 109.47435 * 59.99984 * 16 15 14 45 45 H 0.96997 * 120.00175 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6702 1.9637 -0.8831 5 6 3.5737 1.4461 -0.0049 6 6 4.0410 2.8894 -0.2070 7 6 3.2817 3.8031 0.7220 8 6 3.7756 5.0817 0.9286 9 6 3.1148 5.9615 1.7624 10 6 1.9517 5.5667 2.3985 11 6 1.4566 4.2959 2.2005 12 6 2.1207 3.4016 1.3589 13 7 1.5735 2.1285 1.2066 14 6 1.8081 1.3082 2.4024 15 6 1.0459 1.9045 3.5875 16 6 1.1708 0.9732 4.7949 17 16 0.2684 1.6783 6.1967 18 6 0.5714 0.4378 7.4107 19 1 1.1657 -0.4287 7.1608 20 6 0.0462 0.5741 8.6883 21 7 -0.6786 1.6298 8.9927 22 14 0.3668 -0.7413 9.9752 23 1 1.2016 -1.8182 9.3849 24 1 1.0787 -0.1397 11.1313 25 1 -0.9258 -1.3120 10.4323 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.9463 1.0678 0.9471 32 1 3.9413 0.8220 -0.8195 33 1 5.1074 2.9589 0.0073 34 1 3.8586 3.1886 -1.2391 35 1 4.6838 5.3920 0.4334 36 1 3.5056 6.9561 1.9181 37 1 1.4318 6.2539 3.0494 38 1 0.5466 3.9914 2.6962 39 1 1.4590 0.2918 2.2201 40 1 2.8745 1.2911 2.6279 41 1 1.4653 2.8795 3.8358 42 1 -0.0056 2.0178 3.3232 43 1 0.7514 -0.0018 4.5466 44 1 2.2221 0.8598 5.0592 45 1 -1.0453 1.7253 9.8856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000482987503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:09 Heat of formation + Delta-G solvation = 13.013951 kcal Electronic energy + Delta-G solvation = -22957.372413 eV Core-core repulsion = 19871.996032 eV Total energy + Delta-G solvation = -3085.376381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.94577 -37.60999 -34.95207 -33.25293 -32.42718 -32.08726 -29.88776 -29.27926 -26.46424 -25.50093 -24.67585 -23.25438 -22.03637 -21.40672 -21.27106 -18.91467 -17.46262 -16.92370 -16.37430 -15.63009 -15.29957 -14.87136 -14.78532 -14.39354 -14.20781 -13.97999 -13.81813 -13.35046 -13.14481 -13.08588 -12.87450 -12.56407 -12.32111 -12.09254 -11.71917 -11.54686 -11.46198 -11.27355 -11.17403 -11.06627 -10.96016 -10.86863 -10.61573 -10.57921 -10.42989 -10.16502 -9.57129 -9.17085 -9.04621 -8.60380 -8.26861 -7.81852 -6.49771 -6.21075 -3.90612 1.41728 1.47792 3.21909 3.23099 3.30886 3.51923 3.74325 3.90716 4.24428 4.47533 4.61127 4.67562 4.90836 5.03031 5.09248 5.11168 5.15104 5.19295 5.25519 5.35745 5.39700 5.45644 5.48487 5.52754 5.63349 5.67731 5.69141 5.72703 5.75363 5.83384 5.88291 5.93929 5.98214 6.10420 6.14485 6.19269 6.34077 6.39015 6.44073 6.50964 6.60432 6.65728 6.76984 6.90249 7.10952 7.50464 7.62656 8.38719 9.25464 10.87180 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016158 B = 0.003597 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.507575 B = 7782.435576 C = 8826.887081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.089 3.911 4 H 0.086 0.914 5 C -0.155 4.155 6 C -0.075 4.075 7 C -0.126 4.126 8 C -0.110 4.110 9 C -0.136 4.136 10 C -0.110 4.110 11 C -0.115 4.115 12 C 0.116 3.884 13 N -0.491 5.491 14 C 0.057 3.943 15 C -0.103 4.103 16 C -0.112 4.112 17 S -0.130 6.130 18 C -0.515 4.515 19 H 0.072 0.928 20 C 0.071 3.929 21 N -0.869 5.869 22 Si 0.917 3.083 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.830 2.669 -20.614 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.019 4.019 4 H 0.104 0.896 5 C -0.194 4.194 6 C -0.112 4.112 7 C -0.128 4.128 8 C -0.129 4.129 9 C -0.155 4.155 10 C -0.128 4.128 11 C -0.134 4.134 12 C 0.020 3.980 13 N -0.207 5.207 14 C -0.069 4.069 15 C -0.141 4.141 16 C -0.261 4.261 17 S 0.098 5.902 18 C -0.664 4.664 19 H 0.090 0.910 20 C -0.138 4.138 21 N -0.505 5.505 22 Si 0.744 3.256 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.153 0.847 39 H 0.107 0.893 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.611 3.710 -20.436 21.797 hybrid contribution 1.751 -1.948 0.857 2.756 sum 8.362 1.762 -19.579 21.363 Atomic orbital electron populations 1.21708 0.94733 1.01173 1.02914 1.21741 0.97316 0.94779 1.02249 1.21778 0.92367 0.95001 0.92759 0.89626 1.22267 0.97527 0.96732 1.02868 1.20478 0.99131 0.93394 0.98217 1.19893 0.94843 0.96038 1.02063 1.20883 0.99787 0.93120 0.99106 1.21014 0.96469 0.99589 0.98436 1.21048 0.96372 0.96059 0.99346 1.21377 1.00681 0.92673 0.98694 1.18467 0.91463 0.90962 0.97147 1.58722 1.57265 1.01206 1.03521 1.22400 0.98792 0.97265 0.88447 1.21628 1.01106 0.99246 0.92139 1.23224 1.02804 1.01140 0.98911 1.84607 1.67708 1.33709 1.04187 1.22736 1.38244 1.07924 0.97465 0.90982 1.25003 0.94635 0.96338 0.97786 1.70033 1.32448 1.27242 1.20802 0.86131 0.78181 0.80786 0.80528 1.19636 1.20589 1.20573 0.91137 0.93029 0.93209 0.91538 0.91180 0.91263 0.90805 0.90832 0.90864 0.86662 0.86415 0.85827 0.84666 0.89285 0.94404 0.90746 0.90707 0.92212 0.92447 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.56 37.16 0.36 -1.14 16 2 C -0.12 -1.16 4.90 -26.73 -0.13 -1.29 16 3 C 0.09 0.93 2.27 -67.77 -0.15 0.77 16 4 H 0.09 0.90 8.11 -51.93 -0.42 0.48 16 5 C -0.16 -1.47 5.33 -26.51 -0.14 -1.61 16 6 C -0.08 -0.72 5.81 -27.81 -0.16 -0.89 16 7 C -0.13 -1.52 5.74 -104.38 -0.60 -2.12 16 8 C -0.11 -1.26 9.63 -39.51 -0.38 -1.64 16 9 C -0.14 -1.58 10.05 -39.62 -0.40 -1.98 16 10 C -0.11 -1.40 10.04 -39.71 -0.40 -1.80 16 11 C -0.11 -1.61 7.51 -39.23 -0.29 -1.90 16 12 C 0.12 1.56 5.07 -83.85 -0.42 1.14 16 13 N -0.49 -6.23 3.80 -163.73 -0.62 -6.86 16 14 C 0.06 0.79 3.78 -3.82 -0.01 0.77 16 15 C -0.10 -1.71 3.90 -26.73 -0.10 -1.82 16 16 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 17 S -0.13 -3.43 21.44 -107.50 -2.30 -5.73 16 18 C -0.52 -14.89 9.50 30.94 0.29 -14.59 16 19 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 20 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 21 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 22 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H 0.07 0.84 7.10 -51.93 -0.37 0.47 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.70 6.00 -51.93 -0.31 0.39 16 31 H 0.07 0.74 6.68 -51.93 -0.35 0.39 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.14 1.98 6.16 -52.48 -0.32 1.66 16 39 H 0.09 1.16 5.03 -51.93 -0.26 0.90 16 40 H 0.04 0.54 6.97 -51.93 -0.36 0.18 16 41 H 0.07 1.30 5.56 -51.93 -0.29 1.01 16 42 H 0.07 1.27 7.89 -51.93 -0.41 0.87 16 43 H 0.06 1.20 8.14 -51.91 -0.42 0.77 16 44 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -30.99 358.49 -11.54 -42.53 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.29 Total: 1.60 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: -2.44 Total: -28.21 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.11 Total: -32.22 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.30 Total: -5.73 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.99 -11.54 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000482987503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.544 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds