Wall clock time and date at job start Tue Mar 31 2020 08:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46979 * 2 1 4 4 N 1.46502 * 109.47020 * 119.99693 * 2 1 3 5 5 C 1.46496 * 120.00058 * 299.99928 * 4 2 1 6 6 C 1.50706 * 109.47106 * 89.99968 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47293 * 89.99746 * 10 8 6 12 12 H 1.48504 * 109.47104 * 209.99992 * 10 8 6 13 13 H 1.48495 * 109.47249 * 329.99739 * 10 8 6 14 14 C 1.34779 * 119.99726 * 120.00110 * 4 2 1 15 15 O 1.21283 * 119.99426 * 179.97438 * 14 4 2 16 16 C 1.50698 * 119.99936 * 0.02562 * 14 4 2 17 17 H 1.08998 * 115.55210 * 34.33466 * 16 14 4 18 18 C 1.52995 * 117.49746 * 248.61514 * 16 14 4 19 19 C 1.52992 * 60.00299 * 252.51495 * 18 16 14 20 20 H 1.09002 * 117.51665 * 107.48364 * 19 18 16 21 21 C 1.50704 * 117.49967 * 252.51151 * 19 18 16 22 22 C 1.38242 * 119.97230 * 8.34419 * 21 19 18 23 23 C 1.38205 * 120.02205 * 179.76776 * 22 21 19 24 24 C 1.38453 * 119.97274 * 0.51120 * 23 22 21 25 25 F 1.35100 * 120.02223 * 179.76656 * 24 23 22 26 26 C 1.38462 * 119.95065 * 359.74766 * 24 23 22 27 27 C 1.38194 * 119.97429 * 359.97438 * 26 24 23 28 28 H 1.08996 * 109.47423 * 300.00215 * 1 2 3 29 29 H 1.09007 * 109.47377 * 60.00631 * 1 2 3 30 30 H 1.09003 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47126 * 240.00012 * 2 1 3 32 32 H 1.09006 * 109.47437 * 180.02562 * 3 2 1 33 33 H 1.09009 * 109.46909 * 299.99478 * 3 2 1 34 34 H 1.08999 * 109.47939 * 59.99561 * 3 2 1 35 35 H 1.09001 * 109.47001 * 330.00259 * 5 4 2 36 36 H 1.09000 * 109.47574 * 210.00475 * 5 4 2 37 37 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 38 38 H 1.09001 * 117.50021 * 0.02562 * 18 16 14 39 39 H 1.09000 * 117.49715 * 145.01881 * 18 16 14 40 40 H 1.08001 * 119.98731 * 0.02562 * 22 21 19 41 41 H 1.08000 * 120.00865 * 180.25871 * 23 22 21 42 42 H 1.08001 * 120.00881 * 179.97438 * 26 24 23 43 43 H 1.08002 * 119.98687 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5267 6 6 0.3829 -0.8386 2.9830 7 1 -0.1176 -1.5527 2.3458 8 6 -0.1506 -0.5206 4.2139 9 7 0.4586 0.3494 4.9897 10 14 -1.7387 -1.3251 4.7797 11 1 -1.4249 -2.5759 5.5161 12 1 -2.4734 -0.3950 5.6743 13 1 -2.5802 -1.6441 3.5986 14 6 2.7932 -1.7864 1.0726 15 8 3.1978 -2.3577 2.0629 16 6 3.1577 -2.3009 -0.2961 17 1 3.2986 -1.5389 -1.0627 18 6 2.5561 -3.6387 -0.7312 19 6 4.0400 -3.5487 -0.3698 20 1 4.3571 -3.9972 0.5717 21 6 5.0370 -3.6304 -1.4970 22 6 4.6001 -3.6070 -2.8084 23 6 5.5138 -3.6771 -3.8430 24 6 6.8663 -3.7813 -3.5655 25 9 7.7600 -3.8545 -4.5760 26 6 7.3022 -3.8099 -2.2516 27 6 6.3872 -3.7340 -1.2188 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.5294 0.8908 2.4843 36 1 2.4628 -0.4291 3.2292 37 1 0.0834 0.5728 5.8559 38 1 1.8964 -4.1464 -0.0277 39 1 2.3008 -3.7569 -1.7843 40 1 3.5448 -3.5299 -3.0245 41 1 5.1726 -3.6546 -4.8674 42 1 8.3569 -3.8916 -2.0341 43 1 6.7270 -3.7559 -0.1938 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545971800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:35 Heat of formation + Delta-G solvation = -35.492098 kcal Electronic energy + Delta-G solvation = -24673.837885 eV Core-core repulsion = 21020.144948 eV Total energy + Delta-G solvation = -3653.692938 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.07143 -40.11808 -38.93749 -36.54950 -35.57051 -32.81301 -31.36711 -30.82564 -30.34245 -27.68470 -26.71636 -24.41850 -23.92662 -22.98942 -22.16796 -21.11550 -20.51191 -18.00321 -17.95066 -17.19333 -16.43875 -16.33448 -15.77444 -15.70371 -15.19852 -14.81731 -14.48733 -14.09756 -13.77359 -13.68038 -13.48233 -13.28448 -12.99050 -12.74853 -12.43476 -12.33750 -12.18888 -11.64926 -11.63352 -11.52836 -11.25201 -11.13904 -10.94714 -10.85623 -10.69138 -10.47372 -10.36150 -10.30921 -10.01116 -9.54406 -9.32702 -8.94743 -8.55221 -8.41859 -7.64981 -6.03482 -4.06807 0.89697 1.02112 3.07254 3.30533 3.35562 3.37120 3.40944 3.83763 4.05497 4.13637 4.43481 4.50377 4.53498 4.66032 4.85447 4.93882 5.02589 5.08732 5.21548 5.29251 5.30965 5.38514 5.56473 5.60119 5.68264 5.75715 5.82057 5.92060 5.98413 6.01541 6.04427 6.15906 6.17117 6.27874 6.37632 6.43582 6.60983 6.67991 6.96698 7.11908 7.47078 7.57316 7.93421 8.25394 8.45154 8.91535 9.10452 9.57360 11.04696 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024179 B = 0.003110 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.759028 B = 9001.433332 C = 9319.924214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.133 3.867 3 C -0.163 4.163 4 N -0.586 5.586 5 C 0.246 3.754 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.895 3.105 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.533 3.467 15 O -0.542 6.542 16 C -0.170 4.170 17 H 0.120 0.880 18 C -0.145 4.145 19 C -0.094 4.094 20 H 0.129 0.871 21 C -0.053 4.053 22 C -0.093 4.093 23 C -0.150 4.150 24 C 0.087 3.913 25 F -0.144 7.144 26 C -0.150 4.150 27 C -0.081 4.081 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.041 0.959 37 H 0.262 0.738 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.846 -4.849 -18.021 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.028 3.972 3 C -0.221 4.221 4 N -0.317 5.317 5 C 0.127 3.873 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.319 3.681 15 O -0.420 6.420 16 C -0.191 4.191 17 H 0.138 0.862 18 C -0.182 4.182 19 C -0.112 4.112 20 H 0.147 0.853 21 C -0.053 4.053 22 C -0.111 4.111 23 C -0.169 4.169 24 C 0.068 3.932 25 F -0.122 7.122 26 C -0.169 4.169 27 C -0.099 4.099 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.060 -5.019 -17.331 19.762 hybrid contribution -0.771 -0.276 0.159 0.834 sum 7.289 -5.295 -17.172 19.392 Atomic orbital electron populations 1.22128 0.94674 1.02358 1.02218 1.21023 0.95141 0.92931 0.88064 1.22175 1.00873 0.96615 1.02443 1.48234 1.48109 1.26717 1.08677 1.19251 0.96338 0.94563 0.77158 1.21430 1.07459 1.24732 1.02083 0.92369 1.24928 0.97639 0.95242 0.96379 1.69937 1.39555 1.33317 1.10683 0.86552 0.83268 0.79276 0.78646 1.20648 1.21239 1.19932 1.19319 0.79119 0.80979 0.88679 1.90665 1.54760 1.57442 1.39134 1.22496 1.05651 0.92322 0.98612 0.86186 1.23084 0.95189 0.97662 1.02295 1.21059 0.90391 1.01210 0.98583 0.85329 1.19284 0.93590 0.99121 0.93285 1.20972 0.99961 0.98761 0.91417 1.21101 0.91310 1.03813 1.00695 1.17733 0.86960 1.03848 0.84693 1.91487 1.67594 1.93879 1.59272 1.21140 1.01097 1.03705 0.90964 1.20926 0.91868 0.97643 0.99467 0.90131 0.93338 0.92723 0.90569 0.92950 0.92299 0.91302 0.94744 0.94114 0.92802 0.87531 0.87877 0.84736 0.84800 0.84722 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 8.47 37.16 0.31 -2.21 16 2 C 0.13 2.12 3.16 -67.93 -0.21 1.91 16 3 C -0.16 -2.37 9.17 37.16 0.34 -2.03 16 4 N -0.59 -12.06 2.39 -167.47 -0.40 -12.46 16 5 C 0.25 6.25 4.60 -5.19 -0.02 6.23 16 6 C -0.52 -14.19 7.83 -34.44 -0.27 -14.46 16 7 H 0.06 1.59 7.63 -52.49 -0.40 1.19 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -26.27 13.29 55.43 0.74 -25.54 16 10 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.53 10.82 7.46 -10.99 -0.08 10.73 16 15 O -0.54 -13.35 15.84 5.55 0.09 -13.26 16 16 C -0.17 -2.46 4.64 -91.77 -0.43 -2.88 16 17 H 0.12 1.50 6.64 -51.93 -0.34 1.15 16 18 C -0.15 -1.77 9.56 -26.74 -0.26 -2.03 16 19 C -0.09 -1.22 5.55 -91.77 -0.51 -1.73 16 20 H 0.13 1.88 7.67 -51.93 -0.40 1.48 16 21 C -0.05 -0.58 5.61 -104.62 -0.59 -1.17 16 22 C -0.09 -0.89 9.30 -39.59 -0.37 -1.26 16 23 C -0.15 -1.41 10.03 -39.51 -0.40 -1.81 16 24 C 0.09 0.90 7.30 -39.42 -0.29 0.62 16 25 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 26 C -0.15 -1.49 10.03 -39.52 -0.40 -1.88 16 27 C -0.08 -0.85 9.73 -39.59 -0.39 -1.24 16 28 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.01 5.43 -51.93 -0.28 0.73 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.07 1.14 6.66 -51.93 -0.35 0.80 16 35 H 0.03 0.89 6.43 -51.93 -0.33 0.55 16 36 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.10 0.94 6.17 -51.93 -0.32 0.62 16 40 H 0.13 1.05 6.01 -52.49 -0.32 0.73 16 41 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -31.89 357.71 -8.81 -40.70 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.00 Total: 1.76 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -3.64 Total: -11.61 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.34 Total: -38.00 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.89 -8.81 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545971800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.210 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds