Wall clock time and date at job start Tue Mar 31 2020 08:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46979 * 2 1 4 4 N 1.46502 * 109.47020 * 119.99693 * 2 1 3 5 5 C 1.46496 * 120.00058 * 299.99928 * 4 2 1 6 6 C 1.50706 * 109.47106 * 89.99968 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47293 * 89.99746 * 10 8 6 12 12 H 1.48504 * 109.47104 * 209.99992 * 10 8 6 13 13 H 1.48495 * 109.47249 * 329.99739 * 10 8 6 14 14 C 1.34779 * 119.99726 * 120.00110 * 4 2 1 15 15 O 1.21283 * 119.99426 * 179.97438 * 14 4 2 16 16 C 1.50698 * 119.99936 * 0.02562 * 14 4 2 17 17 H 1.08998 * 115.55210 * 34.33466 * 16 14 4 18 18 C 1.52995 * 117.49746 * 248.61514 * 16 14 4 19 19 C 1.52992 * 60.00299 * 252.51495 * 18 16 14 20 20 H 1.09002 * 117.51665 * 107.48364 * 19 18 16 21 21 C 1.50704 * 117.49967 * 252.51151 * 19 18 16 22 22 C 1.38242 * 119.97230 * 8.34419 * 21 19 18 23 23 C 1.38205 * 120.02205 * 179.76776 * 22 21 19 24 24 C 1.38453 * 119.97274 * 0.51120 * 23 22 21 25 25 F 1.35100 * 120.02223 * 179.76656 * 24 23 22 26 26 C 1.38462 * 119.95065 * 359.74766 * 24 23 22 27 27 C 1.38194 * 119.97429 * 359.97438 * 26 24 23 28 28 H 1.08996 * 109.47423 * 300.00215 * 1 2 3 29 29 H 1.09007 * 109.47377 * 60.00631 * 1 2 3 30 30 H 1.09003 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47126 * 240.00012 * 2 1 3 32 32 H 1.09006 * 109.47437 * 180.02562 * 3 2 1 33 33 H 1.09009 * 109.46909 * 299.99478 * 3 2 1 34 34 H 1.08999 * 109.47939 * 59.99561 * 3 2 1 35 35 H 1.09001 * 109.47001 * 330.00259 * 5 4 2 36 36 H 1.09000 * 109.47574 * 210.00475 * 5 4 2 37 37 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 38 38 H 1.09001 * 117.50021 * 0.02562 * 18 16 14 39 39 H 1.09000 * 117.49715 * 145.01881 * 18 16 14 40 40 H 1.08001 * 119.98731 * 0.02562 * 22 21 19 41 41 H 1.08000 * 120.00865 * 180.25871 * 23 22 21 42 42 H 1.08001 * 120.00881 * 179.97438 * 26 24 23 43 43 H 1.08002 * 119.98687 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5267 6 6 0.3829 -0.8386 2.9830 7 1 -0.1176 -1.5527 2.3458 8 6 -0.1506 -0.5206 4.2139 9 7 0.4586 0.3494 4.9897 10 14 -1.7387 -1.3251 4.7797 11 1 -1.4249 -2.5759 5.5161 12 1 -2.4734 -0.3950 5.6743 13 1 -2.5802 -1.6441 3.5986 14 6 2.7932 -1.7864 1.0726 15 8 3.1978 -2.3577 2.0629 16 6 3.1577 -2.3009 -0.2961 17 1 3.2986 -1.5389 -1.0627 18 6 2.5561 -3.6387 -0.7312 19 6 4.0400 -3.5487 -0.3698 20 1 4.3571 -3.9972 0.5717 21 6 5.0370 -3.6304 -1.4970 22 6 4.6001 -3.6070 -2.8084 23 6 5.5138 -3.6771 -3.8430 24 6 6.8663 -3.7813 -3.5655 25 9 7.7600 -3.8545 -4.5760 26 6 7.3022 -3.8099 -2.2516 27 6 6.3872 -3.7340 -1.2188 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.5294 0.8908 2.4843 36 1 2.4628 -0.4291 3.2292 37 1 0.0834 0.5728 5.8559 38 1 1.8964 -4.1464 -0.0277 39 1 2.3008 -3.7569 -1.7843 40 1 3.5448 -3.5299 -3.0245 41 1 5.1726 -3.6546 -4.8674 42 1 8.3569 -3.8916 -2.0341 43 1 6.7270 -3.7559 -0.1938 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545971800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:34 Heat of formation + Delta-G solvation = -52.436659 kcal Electronic energy + Delta-G solvation = -24674.572656 eV Core-core repulsion = 21020.144948 eV Total energy + Delta-G solvation = -3654.427709 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.86453 -41.33375 -40.07583 -37.84386 -36.96769 -34.89689 -32.40295 -32.09348 -31.23629 -29.57647 -27.96697 -26.05791 -24.78765 -24.04756 -23.57487 -22.46743 -21.46464 -19.39423 -18.85638 -18.58287 -18.42494 -17.23265 -16.93974 -16.63071 -16.55936 -16.25045 -15.88753 -15.40655 -15.10127 -14.83592 -14.48289 -14.34095 -14.25528 -13.98245 -13.78964 -13.53054 -13.40389 -13.24876 -13.14119 -12.81937 -12.70490 -12.53782 -12.49940 -12.22860 -12.08483 -11.95901 -11.67856 -11.53059 -11.49390 -11.37192 -10.61313 -10.55676 -10.04332 -9.43936 -9.37681 -8.19038 -6.31042 0.10261 0.29993 1.36251 1.38951 1.48231 1.69858 2.23855 2.42485 2.56616 3.05726 3.10807 3.30346 3.47403 3.71305 3.79127 3.84498 3.98530 4.00697 4.11373 4.21866 4.33690 4.33966 4.44529 4.52212 4.71184 4.84966 4.88620 4.96764 4.99812 5.03841 5.06003 5.07566 5.14138 5.14520 5.19944 5.24427 5.32466 5.44736 5.59977 5.61427 5.65870 5.90617 5.93688 6.11638 6.75070 6.85799 7.32074 7.51840 8.88417 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024179 B = 0.003110 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.759028 B = 9001.433332 C = 9319.924214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.125 3.875 3 C -0.158 4.158 4 N -0.592 5.592 5 C 0.264 3.736 6 C -0.523 4.523 7 H 0.055 0.945 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.961 3.039 11 H -0.283 1.283 12 H -0.278 1.278 13 H -0.260 1.260 14 C 0.520 3.480 15 O -0.601 6.601 16 C -0.175 4.175 17 H 0.152 0.848 18 C -0.124 4.124 19 C -0.089 4.089 20 H 0.101 0.899 21 C -0.062 4.062 22 C -0.086 4.086 23 C -0.146 4.146 24 C 0.074 3.926 25 F -0.149 7.149 26 C -0.154 4.154 27 C -0.093 4.093 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.118 0.882 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.037 0.963 35 H 0.025 0.975 36 H -0.011 1.011 37 H 0.265 0.735 38 H 0.088 0.912 39 H 0.148 0.852 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.147 0.853 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.744 -5.370 -21.745 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.216 4.216 4 N -0.321 5.321 5 C 0.143 3.857 6 C -0.562 4.562 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.786 3.214 11 H -0.209 1.209 12 H -0.203 1.203 13 H -0.184 1.184 14 C 0.310 3.690 15 O -0.483 6.483 16 C -0.195 4.195 17 H 0.169 0.831 18 C -0.161 4.161 19 C -0.107 4.107 20 H 0.119 0.881 21 C -0.062 4.062 22 C -0.104 4.104 23 C -0.165 4.165 24 C 0.055 3.945 25 F -0.128 7.128 26 C -0.172 4.172 27 C -0.111 4.111 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.136 0.864 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.007 0.993 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.166 0.834 40 H 0.179 0.821 41 H 0.176 0.824 42 H 0.165 0.835 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.950 -5.526 -21.107 22.898 hybrid contribution -0.348 -0.112 1.304 1.354 sum 6.601 -5.638 -19.803 21.622 Atomic orbital electron populations 1.22063 0.94656 1.01758 1.02329 1.21449 0.95201 0.93789 0.87278 1.22143 1.01019 0.95639 1.02801 1.48281 1.48274 1.27282 1.08310 1.18647 0.93949 0.93905 0.79241 1.21654 1.07894 1.24397 1.02266 0.92628 1.25823 1.01174 0.95817 0.96557 1.70064 1.41305 1.34748 1.11119 0.85503 0.79290 0.78029 0.78550 1.20914 1.20313 1.18364 1.20387 0.77874 0.80106 0.90662 1.90628 1.56777 1.59091 1.41828 1.22369 1.07913 0.93905 0.95356 0.83064 1.23247 0.94047 0.94598 1.04235 1.20925 0.91627 0.99734 0.98461 0.88111 1.19189 0.93075 1.00576 0.93395 1.21182 1.01292 0.97580 0.90300 1.21373 0.90619 1.02558 1.01916 1.17981 0.87609 1.04237 0.84647 1.91476 1.67909 1.93967 1.59427 1.21272 1.01743 1.03381 0.90825 1.21016 0.92204 0.98112 0.99750 0.94017 0.89143 0.93625 0.86438 0.92713 0.88361 0.94428 0.95725 0.99296 0.92657 0.89386 0.83404 0.82126 0.82401 0.83509 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 8.47 71.98 0.61 -3.97 16 2 C 0.13 3.76 3.16 44.99 0.14 3.91 16 3 C -0.16 -4.32 9.17 71.98 0.66 -3.66 16 4 N -0.59 -24.82 2.39 -802.14 -1.91 -26.73 16 5 C 0.26 14.21 4.60 85.64 0.39 14.61 16 6 C -0.52 -29.74 7.83 25.60 0.20 -29.54 16 7 H 0.06 3.11 7.63 -2.91 -0.02 3.09 16 8 C 0.00 0.26 5.46 84.65 0.46 0.72 16 9 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 10 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 14 C 0.52 21.59 7.46 87.66 0.65 22.25 16 15 O -0.60 -31.45 15.84 -3.04 -0.05 -31.50 16 16 C -0.17 -4.73 4.64 -11.54 -0.05 -4.78 16 17 H 0.15 3.12 6.64 -2.39 -0.02 3.10 16 18 C -0.12 -2.68 9.56 30.59 0.29 -2.39 16 19 C -0.09 -2.19 5.55 -11.54 -0.06 -2.26 16 20 H 0.10 3.07 7.67 -2.39 -0.02 3.06 16 21 C -0.06 -1.24 5.61 -19.86 -0.11 -1.35 16 22 C -0.09 -1.29 9.30 22.26 0.21 -1.08 16 23 C -0.15 -2.18 10.03 22.31 0.22 -1.96 16 24 C 0.07 1.37 7.30 22.37 0.16 1.53 16 25 F -0.15 -2.96 17.27 44.97 0.78 -2.19 16 26 C -0.15 -2.80 10.03 22.31 0.22 -2.58 16 27 C -0.09 -1.86 9.73 22.26 0.22 -1.64 16 28 H 0.04 1.59 6.92 -2.39 -0.02 1.58 16 29 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.12 2.60 5.43 -2.39 -0.01 2.59 16 32 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.10 1.91 8.14 -2.38 -0.02 1.90 16 34 H 0.04 1.25 6.66 -2.39 -0.02 1.24 16 35 H 0.02 1.36 6.43 -2.39 -0.02 1.35 16 36 H -0.01 -0.70 7.42 -2.39 -0.02 -0.72 16 37 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.15 1.86 6.17 -2.39 -0.01 1.85 16 40 H 0.16 1.51 6.01 -2.91 -0.02 1.49 16 41 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 43 H 0.13 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -75.27 357.71 6.36 -68.91 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 1.02 Total: 13.19 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 4.22 Total: -12.18 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -1.63 Total: -83.26 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.05 Total: -31.50 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -75.27 6.36 -68.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545971800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.477 kcal (2) G-P(sol) polarization free energy of solvation -75.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds