Wall clock time and date at job start Tue Mar 31 2020 08:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46945 * 2 1 4 4 N 1.46493 * 109.47062 * 119.99726 * 2 1 3 5 5 C 1.46500 * 120.00272 * 303.98051 * 4 2 1 6 6 C 1.50706 * 109.46993 * 269.99908 * 5 4 2 7 7 H 1.07998 * 119.99787 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00080 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00328 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00156 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46624 * 60.00044 * 10 8 6 12 12 H 1.48500 * 109.47209 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47492 * 300.00513 * 10 8 6 14 14 C 1.34781 * 119.99815 * 123.97550 * 4 2 1 15 15 O 1.21279 * 119.99588 * 184.57066 * 14 4 2 16 16 C 1.50690 * 119.99768 * 4.57088 * 14 4 2 17 17 H 1.08996 * 115.55354 * 321.15894 * 16 14 4 18 18 C 1.52998 * 117.49819 * 106.87232 * 16 14 4 19 19 C 1.53005 * 60.00326 * 107.48738 * 18 16 14 20 20 H 1.09000 * 117.51102 * 252.51962 * 19 18 16 21 21 C 1.50700 * 117.49993 * 107.49143 * 19 18 16 22 22 C 1.38242 * 119.97447 * 171.38191 * 21 19 18 23 23 C 1.38197 * 120.02646 * 180.02562 * 22 21 19 24 24 C 1.38461 * 119.97331 * 359.97438 * 23 22 21 25 25 F 1.35102 * 120.02592 * 179.97438 * 24 23 22 26 26 C 1.38457 * 119.94929 * 0.25448 * 24 23 22 27 27 C 1.38201 * 119.97214 * 359.46793 * 26 24 23 28 28 H 1.08999 * 109.47270 * 300.00513 * 1 2 3 29 29 H 1.09007 * 109.47187 * 59.99977 * 1 2 3 30 30 H 1.08999 * 109.47159 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46835 * 240.00119 * 2 1 3 32 32 H 1.08997 * 109.47236 * 174.78312 * 3 2 1 33 33 H 1.09003 * 109.47271 * 294.78655 * 3 2 1 34 34 H 1.09005 * 109.47394 * 54.78498 * 3 2 1 35 35 H 1.09004 * 109.46952 * 29.99400 * 5 4 2 36 36 H 1.09000 * 109.47653 * 149.99958 * 5 4 2 37 37 H 0.96993 * 120.00180 * 179.97438 * 9 8 6 38 38 H 1.08998 * 117.50045 * 359.97438 * 18 16 14 39 39 H 1.09003 * 117.50094 * 214.97326 * 18 16 14 40 40 H 1.08003 * 119.98361 * 359.97438 * 22 21 19 41 41 H 1.07993 * 120.01234 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.01813 * 179.74826 * 26 24 23 43 43 H 1.08003 * 119.98431 * 180.29715 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 1.5940 -0.2429 2.5250 6 6 2.5593 0.7947 3.0375 7 1 3.4046 1.0907 2.4340 8 6 2.3634 1.3661 4.2769 9 7 1.3338 1.0060 5.0117 10 14 3.5604 2.6516 4.9125 11 1 3.5826 3.8096 3.9830 12 1 3.1295 3.1064 6.2589 13 1 4.9202 2.0615 5.0005 14 6 2.8579 -1.7378 1.0741 15 8 3.1966 -2.3612 2.0577 16 6 3.3757 -2.1340 -0.2844 17 1 2.6564 -2.0644 -1.1004 18 6 4.8385 -1.8177 -0.6027 19 6 4.4067 -3.2629 -0.3459 20 1 4.7101 -3.7192 0.5964 21 6 4.3502 -4.1932 -1.5301 22 6 4.1418 -5.5461 -1.3363 23 6 4.0903 -6.4002 -2.4215 24 6 4.2470 -5.9005 -3.7032 25 9 4.1974 -6.7346 -4.7648 26 6 4.4604 -4.5461 -3.8958 27 6 4.5058 -3.6930 -2.8094 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1259 1.4440 0.0934 33 1 1.7549 1.9287 -0.9330 34 1 1.6024 1.9827 0.8396 35 1 0.5956 0.1900 2.4609 36 1 1.5784 -1.0930 3.2070 37 1 1.1962 1.4077 5.8837 38 1 5.4261 -1.3228 0.1704 39 1 5.0817 -1.5399 -1.6283 40 1 4.0200 -5.9356 -0.3364 41 1 3.9280 -7.4571 -2.2698 42 1 4.5868 -4.1557 -4.8948 43 1 4.6674 -2.6358 -2.9597 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546679811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:38 Heat of formation + Delta-G solvation = -35.221079 kcal Electronic energy + Delta-G solvation = -24681.227357 eV Core-core repulsion = 21027.546172 eV Total energy + Delta-G solvation = -3653.681185 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.06844 -40.11224 -38.93609 -36.53655 -35.58214 -32.81606 -31.36321 -30.82669 -30.33741 -27.66450 -26.74876 -24.41480 -23.91890 -22.98468 -22.16434 -21.12963 -20.50170 -17.99915 -17.94564 -17.18913 -16.43482 -16.32984 -15.77496 -15.70680 -15.19742 -14.82663 -14.48841 -14.11112 -13.76868 -13.68032 -13.48447 -13.28478 -12.99829 -12.74394 -12.41455 -12.34484 -12.18366 -11.69402 -11.62709 -11.48909 -11.25092 -11.13550 -10.95406 -10.86835 -10.68482 -10.45137 -10.37865 -10.29645 -10.02447 -9.55547 -9.32340 -8.94780 -8.54970 -8.41833 -7.64595 -6.03648 -4.07375 0.90153 1.02488 3.09473 3.30614 3.34810 3.35701 3.40339 3.83907 4.05743 4.13390 4.42882 4.50344 4.53978 4.66365 4.85496 4.94552 5.03171 5.09208 5.21178 5.29365 5.30929 5.38889 5.56421 5.60730 5.68354 5.76310 5.82578 5.92469 5.98848 6.00906 6.05635 6.16478 6.17732 6.27698 6.38207 6.44225 6.60799 6.68392 6.93351 7.12799 7.47870 7.57244 7.93270 8.25171 8.45109 8.90781 9.09958 9.56888 11.04486 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.023749 B = 0.003124 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.727335 B = 8959.469303 C = 9275.355715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 C -0.155 4.155 4 N -0.587 5.587 5 C 0.245 3.755 6 C -0.520 4.520 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.534 3.466 15 O -0.543 6.543 16 C -0.169 4.169 17 H 0.120 0.880 18 C -0.145 4.145 19 C -0.095 4.095 20 H 0.129 0.871 21 C -0.052 4.052 22 C -0.081 4.081 23 C -0.150 4.150 24 C 0.087 3.913 25 F -0.144 7.144 26 C -0.150 4.150 27 C -0.093 4.093 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 -7.956 -18.091 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 C -0.213 4.213 4 N -0.318 5.318 5 C 0.126 3.874 6 C -0.559 4.559 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.320 3.680 15 O -0.421 6.421 16 C -0.190 4.190 17 H 0.138 0.862 18 C -0.182 4.182 19 C -0.113 4.113 20 H 0.147 0.853 21 C -0.052 4.052 22 C -0.099 4.099 23 C -0.169 4.169 24 C 0.067 3.933 25 F -0.122 7.122 26 C -0.169 4.169 27 C -0.111 4.111 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.749 -8.257 -17.402 19.623 hybrid contribution 0.507 0.681 0.171 0.866 sum 4.257 -7.575 -17.231 19.298 Atomic orbital electron populations 1.22166 0.95568 1.01830 1.02506 1.21014 0.94063 0.94006 0.88007 1.22130 1.01724 0.95858 1.01598 1.48226 1.45215 1.29577 1.08755 1.19268 0.95386 0.95586 0.77163 1.21402 1.10698 1.21781 1.02050 0.92413 1.24924 0.95559 0.97137 0.96516 1.69920 1.28588 1.43209 1.11741 0.86614 0.81524 0.81618 0.77981 1.20272 1.21258 1.20259 1.19310 0.79470 0.80681 0.88512 1.90659 1.58598 1.53453 1.39377 1.22478 0.93803 1.03981 0.98744 0.86177 1.23088 0.95007 0.97060 1.03070 1.21064 1.03190 0.89096 0.97959 0.85348 1.19283 0.98961 0.93640 0.93363 1.20928 0.97553 0.92372 0.99054 1.21138 1.03624 1.01157 0.90991 1.17734 1.03720 0.88117 0.83680 1.91488 1.94059 1.71388 1.55305 1.21100 1.03652 0.91702 1.00467 1.20973 0.98775 1.00170 0.91205 0.91147 0.92294 0.92918 0.90626 0.92606 0.93379 0.90483 0.94681 0.94021 0.92726 0.87538 0.87873 0.84599 0.84729 0.84805 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.09 37.16 0.34 -2.05 16 2 C 0.13 2.13 3.16 -67.93 -0.21 1.92 16 3 C -0.16 -2.48 8.41 37.16 0.31 -2.16 16 4 N -0.59 -12.06 2.39 -167.47 -0.40 -12.46 16 5 C 0.24 6.23 4.77 -5.19 -0.02 6.20 16 6 C -0.52 -14.22 8.00 -34.44 -0.28 -14.49 16 7 H 0.06 1.57 7.54 -52.49 -0.40 1.17 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -26.25 13.29 55.43 0.74 -25.52 16 10 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.53 10.85 7.44 -10.99 -0.08 10.77 16 15 O -0.54 -13.37 15.82 5.56 0.09 -13.28 16 16 C -0.17 -2.45 4.68 -91.77 -0.43 -2.88 16 17 H 0.12 1.50 6.61 -51.93 -0.34 1.15 16 18 C -0.15 -1.78 9.56 -26.73 -0.26 -2.04 16 19 C -0.09 -1.23 5.55 -91.76 -0.51 -1.74 16 20 H 0.13 1.89 7.68 -51.93 -0.40 1.49 16 21 C -0.05 -0.58 5.61 -104.62 -0.59 -1.17 16 22 C -0.08 -0.86 9.73 -39.59 -0.39 -1.24 16 23 C -0.15 -1.49 10.03 -39.51 -0.40 -1.89 16 24 C 0.09 0.91 7.30 -39.42 -0.29 0.62 16 25 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 26 C -0.15 -1.42 10.03 -39.51 -0.40 -1.81 16 27 C -0.09 -0.90 9.29 -39.59 -0.37 -1.27 16 28 H 0.07 1.19 6.54 -51.93 -0.34 0.85 16 29 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.00 5.44 -51.93 -0.28 0.72 16 32 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.45 7.30 -51.93 -0.38 1.07 16 35 H 0.04 0.90 6.23 -51.93 -0.32 0.58 16 36 H 0.04 1.22 7.36 -51.93 -0.38 0.84 16 37 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 38 H 0.11 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.10 0.96 6.18 -51.93 -0.32 0.63 16 40 H 0.14 1.31 8.06 -52.48 -0.42 0.88 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.13 1.06 6.02 -52.48 -0.32 0.74 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -31.83 357.76 -8.82 -40.65 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.99 Total: 1.92 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -3.66 Total: -11.65 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.34 Total: -37.97 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.09 Total: -13.28 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.83 -8.82 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546679811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.427 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds