Wall clock time and date at job start Tue Mar 31 2020 08:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46655 * 2 1 4 4 N 1.46499 * 109.47083 * 119.99593 * 2 1 3 5 5 C 1.46496 * 120.00229 * 300.00554 * 4 2 1 6 6 C 1.50706 * 109.47106 * 269.99670 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47288 * 59.99994 * 10 8 6 12 12 H 1.48503 * 109.47086 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46819 * 299.99648 * 10 8 6 14 14 C 1.34779 * 119.99985 * 120.00010 * 4 2 1 15 15 O 1.21278 * 120.00232 * 180.02562 * 14 4 2 16 16 C 1.50703 * 119.99735 * 0.02562 * 14 4 2 17 17 H 1.09007 * 115.55105 * 34.27791 * 16 14 4 18 18 C 1.53001 * 117.49900 * 248.60249 * 16 14 4 19 19 C 1.52992 * 60.00051 * 252.51132 * 18 16 14 20 20 H 1.09006 * 117.50151 * 252.50712 * 19 18 16 21 21 C 1.50705 * 117.50208 * 107.49092 * 19 18 16 22 22 C 1.38246 * 119.96603 * 351.10328 * 21 19 18 23 23 C 1.38206 * 120.02002 * 179.72433 * 22 21 19 24 24 C 1.38458 * 119.97460 * 0.56912 * 23 22 21 25 25 F 1.35096 * 120.02602 * 179.67497 * 24 23 22 26 26 C 1.38462 * 119.94828 * 359.70609 * 24 23 22 27 27 C 1.38202 * 119.97167 * 359.97438 * 26 24 23 28 28 H 1.08996 * 109.47255 * 299.99877 * 1 2 3 29 29 H 1.09002 * 109.47233 * 60.00362 * 1 2 3 30 30 H 1.09010 * 109.46766 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47255 * 240.00123 * 2 1 3 32 32 H 1.09000 * 109.47132 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47510 * 299.99651 * 3 2 1 34 34 H 1.08999 * 109.47607 * 60.00370 * 3 2 1 35 35 H 1.09001 * 109.47001 * 149.99960 * 5 4 2 36 36 H 1.09000 * 109.47574 * 30.00177 * 5 4 2 37 37 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 38 38 H 1.09002 * 117.49546 * 0.02562 * 18 16 14 39 39 H 1.09005 * 117.49609 * 144.99568 * 18 16 14 40 40 H 1.08002 * 119.99049 * 359.97438 * 22 21 19 41 41 H 1.07997 * 120.00914 * 180.29184 * 23 22 21 42 42 H 1.07999 * 120.01490 * 180.02562 * 26 24 23 43 43 H 1.08005 * 119.98299 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6644 -0.1900 2.5267 6 6 2.7031 0.8020 2.9831 7 1 3.5427 1.0364 2.3454 8 6 2.5816 1.4101 4.2144 9 7 1.5594 1.1242 4.9910 10 14 3.8687 2.6402 4.7797 11 1 3.9230 3.7747 3.8231 12 1 3.5100 3.1475 6.1285 13 1 5.1961 1.9767 4.8367 14 6 2.7932 -1.7864 1.0726 15 8 3.1971 -2.3583 2.0629 16 6 3.1577 -2.3009 -0.2961 17 1 3.2977 -1.5390 -1.0630 18 6 2.5564 -3.6389 -0.7311 19 6 4.0403 -3.5485 -0.3699 20 1 4.7613 -3.6075 -1.1852 21 6 4.4787 -4.1687 0.9318 22 6 3.5340 -4.6246 1.8323 23 6 3.9349 -5.1987 3.0238 24 6 5.2830 -5.3065 3.3207 25 9 5.6759 -5.8615 4.4880 26 6 6.2281 -4.8443 2.4205 27 6 5.8249 -4.2766 1.2267 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6238 -1.0226 3.2291 36 1 0.6903 0.2973 2.4844 37 1 1.4738 1.5524 5.8572 38 1 1.8968 -4.1467 -0.0274 39 1 2.3007 -3.7571 -1.7841 40 1 2.4824 -4.5357 1.6028 41 1 3.1968 -5.5591 3.7250 42 1 7.2799 -4.9282 2.6508 43 1 6.5620 -3.9164 0.5242 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546679813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:43 Heat of formation + Delta-G solvation = -22.553233 kcal Electronic energy + Delta-G solvation = -25672.782491 eV Core-core repulsion = 22019.650625 eV Total energy + Delta-G solvation = -3653.131866 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.54500 -40.18871 -38.39373 -36.41041 -35.49039 -32.79152 -30.90767 -30.72972 -29.87066 -27.63662 -26.73677 -24.32162 -23.63772 -22.58144 -22.12922 -21.13906 -20.29227 -17.98971 -17.47846 -17.04231 -16.42487 -15.86974 -15.40993 -15.22872 -14.85443 -14.73502 -14.38306 -14.01054 -13.70355 -13.46188 -13.26225 -13.02562 -12.83161 -12.51446 -12.35954 -12.21834 -11.94907 -11.65612 -11.53266 -11.33752 -11.23875 -10.94628 -10.86858 -10.74114 -10.58266 -10.40148 -10.30810 -10.26017 -9.99345 -9.55013 -9.04817 -8.53847 -8.40165 -7.79371 -7.58090 -6.02002 -4.05011 1.47923 1.68534 3.13050 3.32223 3.37169 3.40679 3.84592 3.90211 4.20299 4.46307 4.63590 4.67846 4.87854 4.95598 5.04228 5.17626 5.22551 5.25665 5.32255 5.41980 5.54166 5.58465 5.62405 5.68610 5.76097 5.92579 6.00739 6.05853 6.16150 6.23650 6.27263 6.36438 6.36524 6.48966 6.59825 6.62209 6.88011 6.96181 7.12818 7.27639 7.47637 7.59182 7.94952 8.27003 8.47330 8.93527 9.14063 9.59189 11.06021 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011251 B = 0.005656 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.125961 B = 4949.396840 C = 6594.730198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 C -0.158 4.158 4 N -0.587 5.587 5 C 0.248 3.752 6 C -0.518 4.518 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.527 3.473 15 O -0.523 6.523 16 C -0.177 4.177 17 H 0.122 0.878 18 C -0.152 4.152 19 C -0.086 4.086 20 H 0.118 0.882 21 C -0.052 4.052 22 C -0.014 4.014 23 C -0.159 4.159 24 C 0.094 3.906 25 F -0.149 7.149 26 C -0.166 4.166 27 C -0.085 4.085 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.033 0.967 37 H 0.263 0.737 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.752 -9.102 -13.983 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.028 3.972 3 C -0.216 4.216 4 N -0.318 5.318 5 C 0.129 3.871 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.721 3.279 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.314 3.686 15 O -0.400 6.400 16 C -0.198 4.198 17 H 0.140 0.860 18 C -0.189 4.189 19 C -0.105 4.105 20 H 0.135 0.865 21 C -0.053 4.053 22 C -0.032 4.032 23 C -0.178 4.178 24 C 0.075 3.925 25 F -0.127 7.127 26 C -0.185 4.185 27 C -0.104 4.104 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.870 -9.346 -13.198 16.280 hybrid contribution 0.751 1.047 0.649 1.443 sum 2.622 -8.299 -12.549 15.272 Atomic orbital electron populations 1.22146 0.95675 1.01701 1.02333 1.21011 0.94014 0.93970 0.88190 1.22149 1.01315 0.95856 1.02245 1.48302 1.48763 1.26191 1.08547 1.19210 0.95773 0.94914 0.77184 1.21383 1.08852 1.23392 1.02020 0.92524 1.24908 0.95692 0.97121 0.96362 1.69920 1.29527 1.43359 1.10683 0.86639 0.82179 0.81319 0.77775 1.20311 1.21255 1.20263 1.19402 0.79210 0.81125 0.88902 1.90726 1.53094 1.57097 1.39127 1.22507 1.06186 0.92324 0.98826 0.85983 1.23086 0.95712 0.97840 1.02277 1.20993 0.93689 0.99125 0.96683 0.86454 1.18830 0.93119 0.98492 0.94818 1.20549 0.99151 0.91601 0.91911 1.20928 0.93909 1.04005 0.98968 1.17656 0.93332 0.98969 0.82582 1.91447 1.91743 1.83287 1.46266 1.20862 0.98987 1.03549 0.95111 1.20574 0.95097 0.98461 0.96218 0.91415 0.92389 0.92951 0.90588 0.92822 0.93357 0.90113 0.94138 0.94921 0.92784 0.88030 0.87716 0.86072 0.85511 0.85570 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.17 37.16 0.34 -1.94 16 2 C 0.13 2.09 3.16 -67.93 -0.21 1.87 16 3 C -0.16 -2.56 8.47 37.16 0.31 -2.24 16 4 N -0.59 -11.81 2.39 -167.47 -0.40 -12.21 16 5 C 0.25 6.26 4.59 -5.19 -0.02 6.23 16 6 C -0.52 -14.27 7.83 -34.44 -0.27 -14.54 16 7 H 0.06 1.57 7.63 -52.49 -0.40 1.17 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 10 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.53 10.29 7.31 -10.98 -0.08 10.21 16 15 O -0.52 -12.06 11.26 5.56 0.06 -12.00 16 16 C -0.18 -2.47 5.01 -91.77 -0.46 -2.93 16 17 H 0.12 1.46 6.64 -51.92 -0.34 1.12 16 18 C -0.15 -1.68 9.57 -26.73 -0.26 -1.93 16 19 C -0.09 -1.08 6.04 -91.77 -0.55 -1.64 16 20 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 21 C -0.05 -0.80 4.38 -104.62 -0.46 -1.25 16 22 C -0.01 -0.23 6.15 -39.59 -0.24 -0.47 16 23 C -0.16 -2.68 10.03 -39.51 -0.40 -3.07 16 24 C 0.09 1.58 7.30 -39.42 -0.29 1.29 16 25 F -0.15 -2.53 17.27 2.25 0.04 -2.49 16 26 C -0.17 -2.54 10.03 -39.51 -0.40 -2.93 16 27 C -0.09 -1.24 9.73 -39.60 -0.39 -1.63 16 28 H 0.07 1.11 6.66 -51.93 -0.35 0.77 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.08 0.99 5.43 -51.93 -0.28 0.70 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.56 6.92 -51.93 -0.36 1.20 16 35 H 0.04 1.17 7.42 -51.93 -0.39 0.79 16 36 H 0.03 0.84 6.43 -51.93 -0.33 0.51 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.10 1.20 6.18 -51.93 -0.32 0.87 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.12 1.90 5.76 -52.49 -0.30 1.60 16 41 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 42 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -32.09 349.70 -8.80 -40.89 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.01 Total: 2.64 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -3.47 Total: -13.35 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.34 Total: -37.93 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.06 Total: -12.00 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.09 -8.80 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546679813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.334 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds