Wall clock time and date at job start Tue Mar 31 2020 08:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46655 * 2 1 4 4 N 1.46499 * 109.47083 * 119.99593 * 2 1 3 5 5 C 1.46496 * 120.00229 * 300.00554 * 4 2 1 6 6 C 1.50706 * 109.47106 * 269.99670 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47288 * 59.99994 * 10 8 6 12 12 H 1.48503 * 109.47086 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46819 * 299.99648 * 10 8 6 14 14 C 1.34779 * 119.99985 * 120.00010 * 4 2 1 15 15 O 1.21278 * 120.00232 * 180.02562 * 14 4 2 16 16 C 1.50703 * 119.99735 * 0.02562 * 14 4 2 17 17 H 1.09007 * 115.55105 * 34.27791 * 16 14 4 18 18 C 1.53001 * 117.49900 * 248.60249 * 16 14 4 19 19 C 1.52992 * 60.00051 * 252.51132 * 18 16 14 20 20 H 1.09006 * 117.50151 * 252.50712 * 19 18 16 21 21 C 1.50705 * 117.50208 * 107.49092 * 19 18 16 22 22 C 1.38246 * 119.96603 * 351.10328 * 21 19 18 23 23 C 1.38206 * 120.02002 * 179.72433 * 22 21 19 24 24 C 1.38458 * 119.97460 * 0.56912 * 23 22 21 25 25 F 1.35096 * 120.02602 * 179.67497 * 24 23 22 26 26 C 1.38462 * 119.94828 * 359.70609 * 24 23 22 27 27 C 1.38202 * 119.97167 * 359.97438 * 26 24 23 28 28 H 1.08996 * 109.47255 * 299.99877 * 1 2 3 29 29 H 1.09002 * 109.47233 * 60.00362 * 1 2 3 30 30 H 1.09010 * 109.46766 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47255 * 240.00123 * 2 1 3 32 32 H 1.09000 * 109.47132 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47510 * 299.99651 * 3 2 1 34 34 H 1.08999 * 109.47607 * 60.00370 * 3 2 1 35 35 H 1.09001 * 109.47001 * 149.99960 * 5 4 2 36 36 H 1.09000 * 109.47574 * 30.00177 * 5 4 2 37 37 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 38 38 H 1.09002 * 117.49546 * 0.02562 * 18 16 14 39 39 H 1.09005 * 117.49609 * 144.99568 * 18 16 14 40 40 H 1.08002 * 119.99049 * 359.97438 * 22 21 19 41 41 H 1.07997 * 120.00914 * 180.29184 * 23 22 21 42 42 H 1.07999 * 120.01490 * 180.02562 * 26 24 23 43 43 H 1.08005 * 119.98299 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6644 -0.1900 2.5267 6 6 2.7031 0.8020 2.9831 7 1 3.5427 1.0364 2.3454 8 6 2.5816 1.4101 4.2144 9 7 1.5594 1.1242 4.9910 10 14 3.8687 2.6402 4.7797 11 1 3.9230 3.7747 3.8231 12 1 3.5100 3.1475 6.1285 13 1 5.1961 1.9767 4.8367 14 6 2.7932 -1.7864 1.0726 15 8 3.1971 -2.3583 2.0629 16 6 3.1577 -2.3009 -0.2961 17 1 3.2977 -1.5390 -1.0630 18 6 2.5564 -3.6389 -0.7311 19 6 4.0403 -3.5485 -0.3699 20 1 4.7613 -3.6075 -1.1852 21 6 4.4787 -4.1687 0.9318 22 6 3.5340 -4.6246 1.8323 23 6 3.9349 -5.1987 3.0238 24 6 5.2830 -5.3065 3.3207 25 9 5.6759 -5.8615 4.4880 26 6 6.2281 -4.8443 2.4205 27 6 5.8249 -4.2766 1.2267 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6238 -1.0226 3.2291 36 1 0.6903 0.2973 2.4844 37 1 1.4738 1.5524 5.8572 38 1 1.8968 -4.1467 -0.0274 39 1 2.3007 -3.7571 -1.7841 40 1 2.4824 -4.5357 1.6028 41 1 3.1968 -5.5591 3.7250 42 1 7.2799 -4.9282 2.6508 43 1 6.5620 -3.9164 0.5242 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546679813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:42 Heat of formation + Delta-G solvation = -39.873134 kcal Electronic energy + Delta-G solvation = -25673.533538 eV Core-core repulsion = 22019.650625 eV Total energy + Delta-G solvation = -3653.882913 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.85788 -41.46448 -39.72506 -37.70473 -36.83232 -34.88866 -32.38019 -31.96544 -31.11744 -29.51400 -27.96839 -25.99010 -24.74125 -23.92328 -23.59371 -22.42954 -21.43220 -19.32513 -18.82124 -18.56644 -18.31411 -17.12884 -16.93297 -16.55780 -16.45852 -15.99754 -15.87187 -15.38420 -15.10747 -14.79399 -14.40732 -14.34475 -14.24551 -14.03535 -13.80562 -13.49165 -13.33564 -13.19955 -13.05962 -12.81649 -12.67751 -12.54091 -12.36000 -12.20231 -12.08247 -11.86517 -11.62565 -11.54900 -11.36958 -11.29068 -10.60793 -10.46590 -9.80452 -9.29992 -9.01188 -8.19159 -6.30582 0.25856 0.47826 1.32810 1.36805 1.43261 1.81532 2.32348 2.47678 2.67395 3.10314 3.14566 3.41170 3.58482 3.81476 3.86628 3.98703 4.03576 4.06061 4.11191 4.35322 4.36703 4.44015 4.47861 4.62130 4.86050 4.88096 4.89228 4.94896 5.05666 5.08314 5.09333 5.12151 5.15855 5.22602 5.28567 5.29301 5.42424 5.46472 5.60312 5.66606 5.71495 5.95596 6.08658 6.13558 6.76618 6.95469 7.34049 7.64435 8.87191 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011251 B = 0.005656 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.125961 B = 4949.396840 C = 6594.730198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 C -0.153 4.153 4 N -0.595 5.595 5 C 0.269 3.731 6 C -0.520 4.520 7 H 0.052 0.948 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.955 3.045 11 H -0.260 1.260 12 H -0.282 1.282 13 H -0.281 1.281 14 C 0.513 3.487 15 O -0.570 6.570 16 C -0.186 4.186 17 H 0.154 0.846 18 C -0.127 4.127 19 C -0.086 4.086 20 H 0.158 0.842 21 C -0.060 4.060 22 C -0.027 4.027 23 C -0.182 4.182 24 C 0.066 3.934 25 F -0.156 7.156 26 C -0.170 4.170 27 C -0.088 4.088 28 H 0.033 0.967 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.120 0.880 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.038 0.962 35 H -0.010 1.010 36 H 0.020 0.980 37 H 0.263 0.737 38 H 0.087 0.913 39 H 0.150 0.850 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.148 0.852 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.914 -8.519 -18.065 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 C -0.211 4.211 4 N -0.325 5.325 5 C 0.147 3.853 6 C -0.559 4.559 7 H 0.070 0.930 8 C -0.192 4.192 9 N -0.571 5.571 10 Si 0.781 3.219 11 H -0.184 1.184 12 H -0.207 1.207 13 H -0.207 1.207 14 C 0.302 3.698 15 O -0.451 6.451 16 C -0.207 4.207 17 H 0.171 0.829 18 C -0.164 4.164 19 C -0.104 4.104 20 H 0.176 0.824 21 C -0.060 4.060 22 C -0.046 4.046 23 C -0.201 4.201 24 C 0.047 3.953 25 F -0.135 7.135 26 C -0.189 4.189 27 C -0.106 4.106 28 H 0.052 0.948 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.008 0.992 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.168 0.832 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.166 0.834 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.022 -8.756 -17.328 19.648 hybrid contribution 0.346 0.830 1.912 2.113 sum 3.368 -7.926 -15.416 17.659 Atomic orbital electron populations 1.22105 0.94636 1.02099 1.02443 1.21398 0.94916 0.93662 0.87616 1.22090 1.00556 0.96246 1.02164 1.48316 1.49341 1.27048 1.07841 1.18537 0.94804 0.92391 0.79520 1.21631 1.08870 1.23416 1.02017 0.92991 1.25763 0.97685 0.99134 0.96660 1.70048 1.31351 1.44668 1.11057 0.85651 0.79063 0.79433 0.77799 1.18411 1.20704 1.20727 1.20498 0.77977 0.80213 0.91077 1.90717 1.54570 1.58276 1.41520 1.22424 1.08587 0.94036 0.95645 0.82860 1.23271 0.94412 0.94325 1.04344 1.21259 0.95539 0.97426 0.96180 0.82422 1.19262 0.93242 0.97637 0.95881 1.20666 0.99557 0.92100 0.92242 1.21102 0.94304 1.05036 0.99702 1.17945 0.93859 1.00408 0.83096 1.91414 1.91770 1.83581 1.46766 1.21221 0.99784 1.02792 0.95073 1.21029 0.95697 0.97543 0.96352 0.94819 0.88660 0.92439 0.86266 0.93870 0.89322 0.94234 0.99178 0.96182 0.92780 0.89501 0.83178 0.86415 0.85858 0.83437 0.82414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 9.17 71.98 0.66 -3.45 16 2 C 0.13 3.70 3.16 44.99 0.14 3.84 16 3 C -0.15 -4.67 8.47 71.98 0.61 -4.06 16 4 N -0.59 -24.03 2.39 -802.15 -1.91 -25.94 16 5 C 0.27 14.29 4.59 85.64 0.39 14.68 16 6 C -0.52 -29.71 7.83 25.60 0.20 -29.51 16 7 H 0.05 2.95 7.63 -2.91 -0.02 2.92 16 8 C 0.01 0.34 5.46 84.65 0.46 0.80 16 9 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 10 Si 0.96 45.91 29.54 68.60 2.03 47.94 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 13 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 14 C 0.51 19.79 7.31 87.66 0.64 20.43 16 15 O -0.57 -27.15 11.26 -3.02 -0.03 -27.18 16 16 C -0.19 -4.49 5.01 -11.54 -0.06 -4.55 16 17 H 0.15 2.75 6.64 -2.38 -0.02 2.74 16 18 C -0.13 -2.24 9.57 30.59 0.29 -1.95 16 19 C -0.09 -1.79 6.04 -11.54 -0.07 -1.86 16 20 H 0.16 2.07 8.14 -2.38 -0.02 2.05 16 21 C -0.06 -1.73 4.38 -19.86 -0.09 -1.82 16 22 C -0.03 -0.92 6.15 22.26 0.14 -0.78 16 23 C -0.18 -6.52 10.03 22.31 0.22 -6.30 16 24 C 0.07 2.31 7.30 22.38 0.16 2.47 16 25 F -0.16 -5.58 17.27 44.97 0.78 -4.81 16 26 C -0.17 -5.09 10.03 22.31 0.22 -4.87 16 27 C -0.09 -2.40 9.73 22.26 0.22 -2.18 16 28 H 0.03 1.11 6.66 -2.39 -0.02 1.10 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.12 2.49 5.43 -2.39 -0.01 2.48 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.52 6.92 -2.39 -0.02 1.51 16 35 H -0.01 -0.62 7.42 -2.39 -0.02 -0.64 16 36 H 0.02 1.11 6.43 -2.39 -0.02 1.09 16 37 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.09 1.85 6.18 -2.39 -0.01 1.83 16 39 H 0.15 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.12 3.87 5.76 -2.91 -0.02 3.86 16 41 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 42 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -76.39 349.70 6.31 -70.09 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 1.02 Total: 15.97 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 4.15 Total: -19.11 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -1.63 Total: -82.90 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.03 Total: -27.18 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.78 Total: -4.81 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -76.39 6.31 -70.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546679813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.214 kcal (2) G-P(sol) polarization free energy of solvation -76.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds