Wall clock time and date at job start Tue Mar 31 2020 09:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47446 * 2 1 4 4 C 1.50701 * 109.46969 * 240.00056 * 2 1 3 5 5 O 1.21294 * 119.99968 * 266.12376 * 4 2 1 6 6 N 1.34776 * 120.00115 * 86.12766 * 4 2 1 7 7 C 1.46498 * 119.99881 * 3.57089 * 6 4 2 8 8 C 1.50705 * 109.47191 * 270.09831 * 7 6 4 9 9 H 1.08003 * 119.99438 * 359.97438 * 8 7 6 10 10 C 1.37869 * 120.00120 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00078 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99819 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47227 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46940 * 120.00287 * 12 10 8 15 15 H 1.48499 * 109.47260 * 240.00151 * 12 10 8 16 16 C 1.40024 * 120.00036 * 183.56810 * 6 4 2 17 17 C 1.38856 * 120.04182 * 172.65947 * 16 6 4 18 18 C 1.38116 * 119.94836 * 180.27777 * 17 16 6 19 19 C 1.38476 * 120.04891 * 359.48958 * 18 17 16 20 20 F 1.35098 * 119.95644 * 180.23234 * 19 18 17 21 21 C 1.38472 * 120.08525 * 0.51087 * 19 18 17 22 22 C 1.38105 * 120.05109 * 359.74513 * 21 19 18 23 23 C 1.53001 * 109.46841 * 120.00186 * 2 1 3 24 24 C 1.53782 * 113.61433 * 279.13435 * 23 2 1 25 25 C 1.53958 * 87.02041 * 220.04964 * 24 23 2 26 26 C 1.53789 * 113.61209 * 181.52588 * 23 2 1 27 27 H 1.09001 * 109.46700 * 307.07538 * 1 2 3 28 28 H 1.09000 * 109.46843 * 67.07140 * 1 2 3 29 29 H 1.08994 * 109.47044 * 187.07106 * 1 2 3 30 30 H 1.09002 * 109.47417 * 30.09567 * 7 6 4 31 31 H 1.09002 * 109.47567 * 150.09609 * 7 6 4 32 32 H 0.97004 * 119.99417 * 179.97438 * 11 10 8 33 33 H 1.07992 * 120.02599 * 359.97438 * 17 16 6 34 34 H 1.08005 * 119.97435 * 179.72657 * 18 17 16 35 35 H 1.08008 * 119.97242 * 179.72482 * 21 19 18 36 36 H 1.08004 * 120.02725 * 179.97438 * 22 21 19 37 37 H 1.08992 * 112.84989 * 50.33581 * 23 2 1 38 38 H 1.09000 * 113.61165 * 334.56856 * 24 23 2 39 39 H 1.08996 * 113.61431 * 105.47210 * 24 23 2 40 40 H 1.09001 * 113.53782 * 270.81459 * 25 24 23 41 41 H 1.09000 * 113.74412 * 139.94394 * 25 24 23 42 42 H 1.08994 * 113.61731 * 254.52754 * 26 23 2 43 43 H 1.08998 * 113.61161 * 25.43665 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3014 -1.8921 -1.1812 6 7 2.1826 -0.0327 -2.3857 7 6 1.9328 1.4102 -2.4263 8 6 0.4843 1.6602 -2.7587 9 1 -0.1833 0.8273 -2.9237 10 6 0.0114 2.9518 -2.8522 11 7 0.8245 3.9659 -2.6518 12 14 -1.7840 3.2615 -3.2649 13 1 -2.4822 1.9630 -3.4427 14 1 -2.4226 4.0191 -2.1588 15 1 -1.8745 4.0487 -4.5209 16 6 2.5776 -0.7078 -3.5472 17 6 2.5858 -0.0454 -4.7675 18 6 2.9702 -0.7148 -5.9128 19 6 3.3574 -2.0425 -5.8431 20 9 3.7376 -2.6941 -6.9638 21 6 3.3499 -2.7048 -4.6270 22 6 2.9611 -2.0407 -3.4802 23 6 2.0399 -0.7213 1.2493 24 6 2.0344 0.1558 2.5124 25 6 3.3855 -0.4901 2.8694 26 6 3.5733 -0.7445 1.3644 27 1 -0.3633 0.6196 0.8199 28 1 -0.3633 0.4004 -0.9465 29 1 -0.3633 -1.0198 0.1265 30 1 2.1629 1.8463 -1.4542 31 1 2.5645 1.8671 -3.1881 32 1 0.4917 4.8747 -2.7179 33 1 2.2871 0.9910 -4.8218 34 1 2.9725 -0.2012 -6.8630 35 1 3.6480 -3.7416 -4.5755 36 1 2.9550 -2.5577 -2.5320 37 1 1.5766 -1.6973 1.3932 38 1 2.1025 1.2233 2.3030 39 1 1.2341 -0.0894 3.2107 40 1 3.2899 -1.4027 3.4578 41 1 4.1094 0.2093 3.2877 42 1 4.0137 -1.7153 1.1373 43 1 4.0629 0.0765 0.8406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556706931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:17 Heat of formation + Delta-G solvation = -31.014390 kcal Electronic energy + Delta-G solvation = -25690.749714 eV Core-core repulsion = 22037.250945 eV Total energy + Delta-G solvation = -3653.498770 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.43322 -40.53325 -38.76106 -37.36908 -35.29417 -32.82454 -32.47031 -30.62132 -28.96651 -27.35647 -25.75226 -25.11897 -23.64433 -23.35360 -22.23469 -21.19016 -19.36803 -18.67372 -17.27368 -17.02841 -16.74839 -16.37791 -15.39271 -15.16762 -14.98520 -14.77801 -14.67108 -14.38187 -13.92172 -13.58180 -13.05293 -12.83064 -12.65771 -12.41429 -12.32169 -12.23193 -12.17090 -11.88935 -11.69131 -11.49520 -11.42701 -11.12459 -11.02332 -10.70914 -10.62062 -10.32611 -10.23080 -10.15628 -10.04164 -9.75610 -9.16252 -8.77630 -8.62038 -8.57858 -7.22166 -6.33659 -4.41570 1.59240 1.74607 3.13180 3.14161 3.23333 3.27399 3.56358 4.18652 4.25379 4.73066 4.78407 4.83706 4.90162 4.98921 5.00672 5.19835 5.28418 5.44504 5.52962 5.65162 5.80315 5.82789 5.84863 5.90824 5.94792 6.00462 6.03264 6.07397 6.21684 6.32238 6.35408 6.40881 6.49272 6.60566 6.67685 6.73185 6.77754 6.81393 6.91142 7.01935 7.16562 7.58138 7.67609 7.82176 8.02698 8.60809 8.74326 9.25742 10.72534 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.008740 B = 0.006790 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.987332 B = 4122.918595 C = 6731.398987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.102 0.898 4 C 0.527 3.473 5 O -0.543 6.543 6 N -0.535 5.535 7 C 0.226 3.774 8 C -0.538 4.538 9 H 0.066 0.934 10 C 0.070 3.930 11 N -0.886 5.886 12 Si 0.894 3.106 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.163 3.837 17 C -0.119 4.119 18 C -0.134 4.134 19 C 0.049 3.951 20 F -0.153 7.153 21 C -0.138 4.138 22 C -0.155 4.155 23 C -0.089 4.089 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.135 4.135 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.267 0.733 33 H 0.149 0.851 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.188 0.812 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.382 -6.069 4.728 8.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.120 0.880 4 C 0.319 3.681 5 O -0.423 6.423 6 N -0.253 5.253 7 C 0.108 3.892 8 C -0.576 4.576 9 H 0.084 0.916 10 C -0.134 4.134 11 N -0.524 5.524 12 Si 0.721 3.279 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.207 1.207 16 C 0.067 3.933 17 C -0.140 4.140 18 C -0.154 4.154 19 C 0.028 3.972 20 F -0.132 7.132 21 C -0.157 4.157 22 C -0.174 4.174 23 C -0.108 4.108 24 C -0.172 4.172 25 C -0.180 4.180 26 C -0.173 4.173 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.166 0.834 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.204 0.796 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.512 -6.410 4.806 8.748 hybrid contribution -0.971 0.424 -0.706 1.274 sum 2.541 -5.986 4.100 7.687 Atomic orbital electron populations 1.21824 0.92260 1.01292 1.04894 1.21278 0.98370 1.00565 0.91000 0.88025 1.20838 0.76162 0.86517 0.84628 1.90205 1.51312 1.16445 1.84361 1.46113 1.60819 1.12010 1.06342 1.19768 0.97792 0.72154 0.99531 1.21362 0.94090 0.92514 1.49613 0.91592 1.24891 0.98146 0.95772 0.94583 1.69919 1.35237 0.99056 1.48172 0.86483 0.84454 0.78619 0.78301 1.19500 1.20666 1.20713 1.18150 0.96277 0.91935 0.86985 1.21010 1.01204 1.01725 0.90028 1.20857 1.02191 0.92909 0.99421 1.17721 1.05234 0.91663 0.82533 1.91419 1.89536 1.81472 1.50803 1.21055 1.03034 1.00406 0.91241 1.22709 0.99345 0.93895 1.01497 1.22418 0.96057 0.99157 0.93166 1.22993 0.97263 0.99711 0.97243 1.22829 0.97768 1.00592 0.96795 1.22897 0.96509 1.02027 0.95861 0.92136 0.89033 0.93403 0.93305 0.93663 0.92325 0.83368 0.85200 0.85506 0.79562 0.88922 0.89879 0.91689 0.90578 0.91783 0.91424 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.15 37.16 0.34 -2.08 16 2 C -0.09 -1.53 1.84 -91.77 -0.17 -1.70 16 3 H 0.10 1.78 5.80 -51.93 -0.30 1.48 16 4 C 0.53 10.09 6.29 -10.98 -0.07 10.02 16 5 O -0.54 -10.78 12.49 5.55 0.07 -10.71 16 6 N -0.53 -10.80 2.68 -114.71 -0.31 -11.11 16 7 C 0.23 4.93 4.28 -5.19 -0.02 4.91 16 8 C -0.54 -12.67 7.39 -34.44 -0.25 -12.93 16 9 H 0.07 1.62 7.19 -52.48 -0.38 1.24 16 10 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -22.60 13.29 55.43 0.74 -21.87 16 12 Si 0.89 19.36 29.54 -169.99 -5.02 14.34 16 13 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 C 0.16 3.23 6.49 -83.66 -0.54 2.68 16 17 C -0.12 -2.24 9.15 -39.40 -0.36 -2.60 16 18 C -0.13 -2.27 10.02 -39.54 -0.40 -2.67 16 19 C 0.05 0.83 7.30 -39.41 -0.29 0.54 16 20 F -0.15 -2.54 17.26 2.25 0.04 -2.50 16 21 C -0.14 -2.31 10.02 -39.54 -0.40 -2.71 16 22 C -0.16 -2.88 9.04 -39.40 -0.36 -3.23 16 23 C -0.09 -1.28 2.56 -89.80 -0.23 -1.51 16 24 C -0.13 -1.64 7.63 -25.82 -0.20 -1.83 16 25 C -0.14 -1.62 8.09 -25.82 -0.21 -1.83 16 26 C -0.14 -1.85 6.96 -25.91 -0.18 -2.03 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.09 1.76 5.33 -51.93 -0.28 1.49 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 1.09 5.90 -51.93 -0.31 0.78 16 31 H 0.05 1.04 6.54 -51.93 -0.34 0.70 16 32 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 33 H 0.15 2.91 6.27 -52.49 -0.33 2.58 16 34 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 35 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 36 H 0.19 3.59 4.55 -56.13 -0.26 3.33 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.08 1.03 7.99 -51.93 -0.41 0.61 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 1.10 8.10 -51.93 -0.42 0.67 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -25.09 347.31 -8.64 -33.73 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.96 Total: 8.25 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -3.43 Total: -15.36 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.43 Total: -32.98 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -25.09 -8.64 -33.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556706931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.718 kcal (2) G-P(sol) polarization free energy of solvation -25.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds