Wall clock time and date at job start Tue Mar 31 2020 09:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47446 * 2 1 4 4 C 1.50701 * 109.46969 * 240.00056 * 2 1 3 5 5 O 1.21294 * 119.99968 * 266.12376 * 4 2 1 6 6 N 1.34776 * 120.00115 * 86.12766 * 4 2 1 7 7 C 1.46498 * 119.99881 * 3.57089 * 6 4 2 8 8 C 1.50705 * 109.47191 * 270.09831 * 7 6 4 9 9 H 1.08003 * 119.99438 * 359.97438 * 8 7 6 10 10 C 1.37869 * 120.00120 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00078 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99819 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47227 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46940 * 120.00287 * 12 10 8 15 15 H 1.48499 * 109.47260 * 240.00151 * 12 10 8 16 16 C 1.40024 * 120.00036 * 183.56810 * 6 4 2 17 17 C 1.38856 * 120.04182 * 172.65947 * 16 6 4 18 18 C 1.38116 * 119.94836 * 180.27777 * 17 16 6 19 19 C 1.38476 * 120.04891 * 359.48958 * 18 17 16 20 20 F 1.35098 * 119.95644 * 180.23234 * 19 18 17 21 21 C 1.38472 * 120.08525 * 0.51087 * 19 18 17 22 22 C 1.38105 * 120.05109 * 359.74513 * 21 19 18 23 23 C 1.53001 * 109.46841 * 120.00186 * 2 1 3 24 24 C 1.53782 * 113.61433 * 279.13435 * 23 2 1 25 25 C 1.53958 * 87.02041 * 220.04964 * 24 23 2 26 26 C 1.53789 * 113.61209 * 181.52588 * 23 2 1 27 27 H 1.09001 * 109.46700 * 307.07538 * 1 2 3 28 28 H 1.09000 * 109.46843 * 67.07140 * 1 2 3 29 29 H 1.08994 * 109.47044 * 187.07106 * 1 2 3 30 30 H 1.09002 * 109.47417 * 30.09567 * 7 6 4 31 31 H 1.09002 * 109.47567 * 150.09609 * 7 6 4 32 32 H 0.97004 * 119.99417 * 179.97438 * 11 10 8 33 33 H 1.07992 * 120.02599 * 359.97438 * 17 16 6 34 34 H 1.08005 * 119.97435 * 179.72657 * 18 17 16 35 35 H 1.08008 * 119.97242 * 179.72482 * 21 19 18 36 36 H 1.08004 * 120.02725 * 179.97438 * 22 21 19 37 37 H 1.08992 * 112.84989 * 50.33581 * 23 2 1 38 38 H 1.09000 * 113.61165 * 334.56856 * 24 23 2 39 39 H 1.08996 * 113.61431 * 105.47210 * 24 23 2 40 40 H 1.09001 * 113.53782 * 270.81459 * 25 24 23 41 41 H 1.09000 * 113.74412 * 139.94394 * 25 24 23 42 42 H 1.08994 * 113.61731 * 254.52754 * 26 23 2 43 43 H 1.08998 * 113.61161 * 25.43665 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3014 -1.8921 -1.1812 6 7 2.1826 -0.0327 -2.3857 7 6 1.9328 1.4102 -2.4263 8 6 0.4843 1.6602 -2.7587 9 1 -0.1833 0.8273 -2.9237 10 6 0.0114 2.9518 -2.8522 11 7 0.8245 3.9659 -2.6518 12 14 -1.7840 3.2615 -3.2649 13 1 -2.4822 1.9630 -3.4427 14 1 -2.4226 4.0191 -2.1588 15 1 -1.8745 4.0487 -4.5209 16 6 2.5776 -0.7078 -3.5472 17 6 2.5858 -0.0454 -4.7675 18 6 2.9702 -0.7148 -5.9128 19 6 3.3574 -2.0425 -5.8431 20 9 3.7376 -2.6941 -6.9638 21 6 3.3499 -2.7048 -4.6270 22 6 2.9611 -2.0407 -3.4802 23 6 2.0399 -0.7213 1.2493 24 6 2.0344 0.1558 2.5124 25 6 3.3855 -0.4901 2.8694 26 6 3.5733 -0.7445 1.3644 27 1 -0.3633 0.6196 0.8199 28 1 -0.3633 0.4004 -0.9465 29 1 -0.3633 -1.0198 0.1265 30 1 2.1629 1.8463 -1.4542 31 1 2.5645 1.8671 -3.1881 32 1 0.4917 4.8747 -2.7179 33 1 2.2871 0.9910 -4.8218 34 1 2.9725 -0.2012 -6.8630 35 1 3.6480 -3.7416 -4.5755 36 1 2.9550 -2.5577 -2.5320 37 1 1.5766 -1.6973 1.3932 38 1 2.1025 1.2233 2.3030 39 1 1.2341 -0.0894 3.2107 40 1 3.2899 -1.4027 3.4578 41 1 4.1094 0.2093 3.2877 42 1 4.0137 -1.7153 1.1373 43 1 4.0629 0.0765 0.8406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556706931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:16 Heat of formation + Delta-G solvation = -40.172236 kcal Electronic energy + Delta-G solvation = -25691.146829 eV Core-core repulsion = 22037.250945 eV Total energy + Delta-G solvation = -3653.895884 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.78767 -42.00746 -39.99381 -38.71295 -36.91643 -34.60098 -33.84646 -32.04949 -30.48685 -29.08170 -26.90377 -26.21291 -25.33694 -24.75665 -23.71023 -22.56284 -20.52760 -20.06236 -18.71473 -18.67596 -18.41380 -17.87724 -16.65187 -16.61042 -16.48433 -16.09093 -15.97735 -15.94582 -15.32760 -14.98025 -14.50719 -14.45188 -14.05951 -13.92877 -13.73521 -13.59046 -13.29923 -13.23134 -13.17677 -12.96875 -12.83838 -12.69023 -12.58739 -12.15963 -12.05763 -11.92670 -11.79550 -11.36804 -11.15270 -10.92027 -10.80018 -10.61563 -10.11886 -10.03285 -8.76450 -8.20694 -6.34221 0.14624 0.32441 1.39821 1.45186 1.53202 1.65445 2.04549 2.40583 2.77233 3.09465 3.37057 3.44018 3.75472 3.80120 3.85109 3.96138 3.99564 4.16729 4.30921 4.34157 4.37229 4.48023 4.50718 4.59636 4.87656 4.89432 4.90421 4.93137 4.99165 5.03864 5.08812 5.12643 5.14921 5.19292 5.26538 5.32960 5.35956 5.43812 5.47512 5.65138 5.68285 5.71295 5.96953 6.16149 6.42093 6.75264 7.17289 7.35825 8.83894 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.008740 B = 0.006790 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.987332 B = 4122.918595 C = 6731.398987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.090 0.910 4 C 0.521 3.479 5 O -0.551 6.551 6 N -0.541 5.541 7 C 0.242 3.758 8 C -0.531 4.531 9 H 0.054 0.946 10 C 0.033 3.967 11 N -0.914 5.914 12 Si 0.947 3.053 13 H -0.272 1.272 14 H -0.276 1.276 15 H -0.282 1.282 16 C 0.139 3.861 17 C -0.131 4.131 18 C -0.127 4.127 19 C 0.050 3.950 20 F -0.147 7.147 21 C -0.129 4.129 22 C -0.162 4.162 23 C -0.092 4.092 24 C -0.128 4.128 25 C -0.128 4.128 26 C -0.142 4.142 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.030 0.970 32 H 0.269 0.731 33 H 0.134 0.866 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.182 0.818 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 -6.911 5.222 9.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.108 0.892 4 C 0.314 3.686 5 O -0.433 6.433 6 N -0.260 5.260 7 C 0.123 3.877 8 C -0.569 4.569 9 H 0.072 0.928 10 C -0.169 4.169 11 N -0.553 5.553 12 Si 0.773 3.227 13 H -0.197 1.197 14 H -0.201 1.201 15 H -0.208 1.208 16 C 0.043 3.957 17 C -0.151 4.151 18 C -0.146 4.146 19 C 0.030 3.970 20 F -0.126 7.126 21 C -0.148 4.148 22 C -0.182 4.182 23 C -0.111 4.111 24 C -0.165 4.165 25 C -0.166 4.166 26 C -0.179 4.179 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.198 0.802 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.287 -7.268 5.297 9.576 hybrid contribution -0.849 0.607 -0.937 1.403 sum 2.438 -6.662 4.360 8.327 Atomic orbital electron populations 1.21756 0.92056 1.01945 1.03988 1.21304 0.98421 0.99947 0.91127 0.89181 1.21305 0.75793 0.86602 0.84919 1.90194 1.51728 1.16765 1.84563 1.46089 1.61359 1.11379 1.07125 1.19419 0.96602 0.73236 0.98470 1.21396 0.94618 0.92098 1.48832 0.92784 1.25456 1.01077 0.95653 0.94668 1.69994 1.36593 0.99339 1.49362 0.85669 0.80853 0.78177 0.78028 1.19700 1.20116 1.20754 1.18454 0.97379 0.92739 0.87169 1.20940 1.02347 1.01265 0.90570 1.21062 1.00810 0.93042 0.99704 1.17753 1.04841 0.91640 0.82781 1.91440 1.89404 1.81297 1.50439 1.21292 1.01576 1.01524 0.90437 1.22653 1.00047 0.93423 1.02027 1.22458 0.96359 0.99375 0.92884 1.22966 0.98388 0.99098 0.96091 1.22794 0.97358 1.01396 0.95022 1.22906 0.95873 1.01193 0.97966 0.90266 0.91892 0.92601 0.93924 0.95190 0.92222 0.84780 0.82836 0.82794 0.80167 0.88977 0.90251 0.89984 0.89062 0.90574 0.92195 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.15 71.98 0.66 -3.96 16 2 C -0.09 -2.93 1.84 -11.54 -0.02 -2.96 16 3 H 0.09 3.24 5.80 -2.39 -0.01 3.22 16 4 C 0.52 20.32 6.29 87.66 0.55 20.87 16 5 O -0.55 -22.09 12.49 -3.07 -0.04 -22.13 16 6 N -0.54 -22.48 2.68 -635.22 -1.71 -24.19 16 7 C 0.24 10.93 4.28 85.63 0.37 11.29 16 8 C -0.53 -25.57 7.39 25.60 0.19 -25.38 16 9 H 0.05 2.71 7.19 -2.91 -0.02 2.69 16 10 C 0.03 1.61 5.46 84.65 0.46 2.07 16 11 N -0.91 -47.16 13.29 21.45 0.28 -46.88 16 12 Si 0.95 39.79 29.54 68.60 2.03 41.81 16 13 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 14 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 15 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 16 C 0.14 5.56 6.49 38.13 0.25 5.81 16 17 C -0.13 -4.96 9.15 22.39 0.20 -4.75 16 18 C -0.13 -4.15 10.02 22.30 0.22 -3.93 16 19 C 0.05 1.60 7.30 22.38 0.16 1.77 16 20 F -0.15 -4.50 17.26 44.97 0.78 -3.72 16 21 C -0.13 -4.12 10.02 22.29 0.22 -3.90 16 22 C -0.16 -5.97 9.04 22.39 0.20 -5.77 16 23 C -0.09 -2.55 2.56 -10.26 -0.03 -2.58 16 24 C -0.13 -2.86 7.63 31.18 0.24 -2.63 16 25 C -0.13 -2.64 8.09 31.18 0.25 -2.39 16 26 C -0.14 -3.79 6.96 31.13 0.22 -3.58 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.06 2.45 5.33 -2.39 -0.01 2.44 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.98 5.90 -2.39 -0.01 1.96 16 31 H 0.03 1.44 6.54 -2.39 -0.02 1.43 16 32 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 33 H 0.13 5.44 6.27 -2.91 -0.02 5.42 16 34 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 35 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 36 H 0.18 6.94 4.55 -60.65 -0.28 6.66 16 37 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.08 1.85 7.99 -2.39 -0.02 1.83 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 1.88 8.10 -2.39 -0.02 1.86 16 Total: -1.00 -52.96 347.31 6.25 -46.71 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.76 Total: 28.40 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 4.15 Total: -20.00 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -1.42 Total: -71.07 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.04 Total: -22.13 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.78 Total: -3.72 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.81 kcal Total: -52.96 6.25 -46.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556706931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.534 kcal (2) G-P(sol) polarization free energy of solvation -52.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds