Wall clock time and date at job start Tue Mar 31 2020 09:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.67054 * 2 1 4 4 C 1.54891 * 110.75638 * 236.76098 * 2 1 3 5 5 C 1.54260 * 104.19498 * 203.74331 * 4 2 1 6 6 C 1.53878 * 106.60188 * 23.61234 * 5 4 2 7 7 H 1.08995 * 110.03755 * 240.66737 * 6 5 4 8 8 C 1.50698 * 110.03361 * 119.27918 * 6 5 4 9 9 O 1.21295 * 120.00321 * 242.09447 * 8 6 5 10 10 N 1.34774 * 119.99885 * 62.09653 * 8 6 5 11 11 C 1.46499 * 120.00108 * 5.55423 * 10 8 6 12 12 C 1.50699 * 109.47350 * 270.00244 * 11 10 8 13 13 H 1.07995 * 119.99929 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00185 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99761 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00198 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46705 * 59.99824 * 16 14 12 18 18 H 1.48497 * 109.47209 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46851 * 300.00188 * 16 14 12 20 20 C 1.40027 * 120.00338 * 185.55671 * 10 8 6 21 21 C 1.38854 * 120.04534 * 55.64208 * 20 10 8 22 22 C 1.38115 * 119.95640 * 180.02562 * 21 20 10 23 23 C 1.38481 * 120.04314 * 359.97438 * 22 21 20 24 24 F 1.35095 * 119.95231 * 180.02562 * 23 22 21 25 25 C 1.38465 * 120.08872 * 0.27771 * 23 22 21 26 26 C 1.38118 * 120.04778 * 359.44963 * 25 23 22 27 27 C 1.54275 * 106.63706 * 359.97438 * 6 5 4 28 28 H 1.08994 * 109.47425 * 181.78235 * 1 2 3 29 29 H 1.09003 * 109.47157 * 301.78661 * 1 2 3 30 30 H 1.09006 * 109.47023 * 61.78180 * 1 2 3 31 31 H 1.09002 * 110.48221 * 85.07089 * 4 2 1 32 32 H 1.09001 * 110.48867 * 322.42386 * 4 2 1 33 33 H 1.09003 * 110.03658 * 264.32830 * 5 4 2 34 34 H 1.09001 * 110.03385 * 142.89503 * 5 4 2 35 35 H 1.09002 * 109.46739 * 29.99923 * 11 10 8 36 36 H 1.09008 * 109.47229 * 149.99741 * 11 10 8 37 37 H 0.97003 * 120.00094 * 180.02562 * 15 14 12 38 38 H 1.07992 * 120.02108 * 0.02562 * 21 20 10 39 39 H 1.07993 * 119.97560 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.97678 * 179.70284 * 25 23 22 41 41 H 1.07995 * 120.02275 * 180.25756 * 26 25 23 42 42 H 1.09000 * 110.48131 * 95.08939 * 27 6 5 43 43 H 1.08997 * 110.48233 * 217.73517 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0789 -0.7939 -1.2114 5 6 3.4931 -1.2255 -0.7714 6 6 3.4931 -1.2282 0.7673 7 1 4.2331 -0.5211 1.1420 8 6 3.7956 -2.6122 1.2812 9 8 2.9745 -3.2038 1.9498 10 7 4.9785 -3.1926 0.9978 11 6 6.0168 -2.4345 0.2954 12 6 5.8555 -2.6204 -1.1914 13 1 5.0595 -3.2415 -1.5747 14 6 6.7242 -1.9976 -2.0623 15 7 7.6939 -1.2417 -1.5954 16 14 6.5248 -2.2286 -3.9052 17 1 5.1862 -1.7403 -4.3232 18 1 7.5772 -1.4601 -4.6172 19 1 6.6528 -3.6696 -4.2401 20 6 5.2151 -4.5203 1.3747 21 6 4.3500 -5.5249 0.9618 22 6 4.5849 -6.8338 1.3351 23 6 5.6825 -7.1445 2.1201 24 9 5.9108 -8.4255 2.4837 25 6 6.5434 -6.1435 2.5372 26 6 6.3153 -4.8341 2.1615 27 6 2.0793 -0.7975 1.2098 28 1 -0.3634 -1.0271 0.0320 29 1 -0.3633 0.5413 0.8735 30 1 -0.3633 0.4859 -0.9056 31 1 2.1321 -0.1556 -2.0934 32 1 1.4574 -1.6674 -1.4084 33 1 4.2326 -0.5165 -1.1435 34 1 3.7120 -2.2253 -1.1465 35 1 5.9235 -1.3767 0.5415 36 1 6.9992 -2.7937 0.6021 37 1 8.3049 -0.8032 -2.2081 38 1 3.4942 -5.2830 0.3493 39 1 3.9120 -7.6153 1.0145 40 1 7.3962 -6.3872 3.1534 41 1 6.9894 -4.0542 2.4835 42 1 1.4577 -1.6716 1.4043 43 1 2.1333 -0.1622 2.0938 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558059799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:30 Heat of formation + Delta-G solvation = -69.314232 kcal Electronic energy + Delta-G solvation = -25704.505308 eV Core-core repulsion = 22049.345733 eV Total energy + Delta-G solvation = -3655.159575 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.60170 -40.26628 -38.43080 -36.83573 -35.14815 -32.71853 -31.28108 -30.85496 -29.11362 -28.39982 -27.09931 -25.13701 -23.43196 -22.60681 -22.26617 -20.60678 -19.67438 -18.45961 -17.41318 -16.90765 -16.40280 -16.27225 -15.88253 -15.39753 -15.26140 -14.53379 -14.41821 -13.94269 -13.80769 -13.29086 -13.20888 -13.11596 -12.79846 -12.74540 -12.52127 -12.35757 -11.92076 -11.77957 -11.55604 -11.20107 -11.03418 -10.88864 -10.79051 -10.71696 -10.48660 -10.42938 -10.26760 -10.12959 -10.07123 -9.65891 -9.08838 -8.78811 -8.76648 -8.61995 -7.54037 -6.26391 -4.30787 1.45573 1.56532 3.18743 3.19251 3.24886 3.28839 3.66718 3.96271 4.27067 4.57007 4.90802 4.96849 5.04338 5.05996 5.11186 5.13572 5.43651 5.56962 5.68034 5.69517 5.74004 5.78576 5.89202 5.92734 6.01441 6.02431 6.17136 6.18244 6.27463 6.32814 6.39196 6.41076 6.47842 6.52516 6.65153 6.73417 6.77395 6.95250 7.04367 7.07580 7.15626 7.53327 7.66913 7.91676 8.08254 8.65694 8.84010 9.32786 10.80453 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010140 B = 0.006095 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.616795 B = 4592.864379 C = 6510.541691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.123 4.123 5 C -0.108 4.108 6 C -0.101 4.101 7 H 0.093 0.907 8 C 0.526 3.474 9 O -0.556 6.556 10 N -0.559 5.559 11 C 0.237 3.763 12 C -0.531 4.531 13 H 0.065 0.935 14 C 0.069 3.931 15 N -0.889 5.889 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.173 3.827 21 C -0.086 4.086 22 C -0.140 4.140 23 C 0.071 3.929 24 F -0.148 7.148 25 C -0.140 4.140 26 C -0.104 4.104 27 C -0.105 4.105 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.045 0.955 36 H 0.040 0.960 37 H 0.267 0.733 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.082 0.918 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.534 -1.130 3.884 7.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.161 4.161 5 C -0.145 4.145 6 C -0.122 4.122 7 H 0.111 0.889 8 C 0.316 3.684 9 O -0.435 6.435 10 N -0.284 5.284 11 C 0.119 3.881 12 C -0.569 4.569 13 H 0.083 0.917 14 C -0.135 4.135 15 N -0.527 5.527 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.201 1.201 20 C 0.080 3.920 21 C -0.106 4.106 22 C -0.160 4.160 23 C 0.052 3.948 24 F -0.127 7.127 25 C -0.159 4.159 26 C -0.124 4.124 27 C -0.143 4.143 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.100 0.900 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.775 -1.297 4.169 8.060 hybrid contribution 0.316 -0.234 -1.104 1.172 sum -6.460 -1.532 3.065 7.312 Atomic orbital electron populations 1.21743 0.95511 1.01618 1.00965 1.22126 0.94873 0.99102 0.95615 0.90906 1.22523 0.97338 0.99122 0.97110 1.22432 0.95522 1.05184 0.91397 1.21802 0.98421 0.93389 0.98588 0.88851 1.20780 0.80381 0.88663 0.78538 1.90614 1.47200 1.66166 1.39569 1.46087 1.16813 1.09968 1.55567 1.19636 0.85304 0.91558 0.91612 1.21316 1.14662 1.30555 0.90392 0.91716 1.24842 0.94783 0.94865 0.98971 1.69894 1.16619 1.30779 1.35421 0.86649 0.78123 0.78515 0.84888 1.19790 1.21136 1.20121 1.17700 0.94843 0.85150 0.94322 1.20967 0.99940 0.90926 0.98777 1.20896 0.97537 0.97335 1.00203 1.17590 0.97547 0.78546 1.01124 1.91445 1.94593 1.36208 1.90444 1.20868 1.00204 0.92095 1.02744 1.20976 0.98380 0.96092 0.96930 1.22402 0.94918 1.00096 0.96903 0.92730 0.93093 0.93044 0.92109 0.92259 0.90109 0.88751 0.93728 0.94237 0.92368 0.85316 0.85046 0.84919 0.84845 0.89973 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.27 37.16 0.34 -1.29 16 2 C -0.10 -1.33 3.49 -88.58 -0.31 -1.64 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.12 -1.85 6.28 -25.07 -0.16 -2.01 16 5 C -0.11 -1.93 4.39 -25.61 -0.11 -2.04 16 6 C -0.10 -1.76 2.43 -90.65 -0.22 -1.98 16 7 H 0.09 1.61 7.22 -51.93 -0.37 1.23 16 8 C 0.53 10.45 6.58 -10.99 -0.07 10.37 16 9 O -0.56 -11.98 14.72 5.54 0.08 -11.89 16 10 N -0.56 -11.30 2.54 -114.71 -0.29 -11.59 16 11 C 0.24 5.23 4.67 -5.19 -0.02 5.21 16 12 C -0.53 -12.59 6.30 -34.44 -0.22 -12.81 16 13 H 0.06 1.56 6.52 -52.49 -0.34 1.22 16 14 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -23.07 13.29 55.43 0.74 -22.33 16 16 Si 0.89 19.57 29.54 -169.99 -5.02 14.54 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 C 0.17 3.33 5.20 -83.66 -0.44 2.90 16 21 C -0.09 -1.56 8.90 -39.40 -0.35 -1.91 16 22 C -0.14 -2.24 10.02 -39.54 -0.40 -2.64 16 23 C 0.07 1.14 7.30 -39.41 -0.29 0.85 16 24 F -0.15 -2.29 17.26 2.25 0.04 -2.25 16 25 C -0.14 -2.16 10.02 -39.54 -0.40 -2.56 16 26 C -0.10 -1.79 9.30 -39.40 -0.37 -2.16 16 27 C -0.11 -1.61 5.60 -25.03 -0.14 -1.75 16 28 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.88 8.05 -51.93 -0.42 0.47 16 33 H 0.08 1.56 7.86 -51.93 -0.41 1.15 16 34 H 0.09 1.90 4.72 -51.93 -0.25 1.65 16 35 H 0.04 1.01 6.42 -51.93 -0.33 0.67 16 36 H 0.04 0.93 7.27 -51.92 -0.38 0.55 16 37 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 38 H 0.13 2.34 8.01 -52.49 -0.42 1.92 16 39 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.13 2.15 7.76 -52.49 -0.41 1.75 16 42 H 0.08 1.38 6.78 -51.93 -0.35 1.02 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -26.18 347.76 -8.65 -34.83 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.19 Total: 5.31 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -3.24 Total: -11.86 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.44 Total: -33.92 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.08 Total: -11.89 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.18 -8.65 -34.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558059799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.481 kcal (2) G-P(sol) polarization free energy of solvation -26.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds