Wall clock time and date at job start Tue Mar 31 2020 09:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.67054 * 2 1 4 4 C 1.54891 * 110.75638 * 236.76098 * 2 1 3 5 5 C 1.54260 * 104.19498 * 203.74331 * 4 2 1 6 6 C 1.53878 * 106.60188 * 23.61234 * 5 4 2 7 7 H 1.08995 * 110.03755 * 240.66737 * 6 5 4 8 8 C 1.50698 * 110.03361 * 119.27918 * 6 5 4 9 9 O 1.21295 * 120.00321 * 242.09447 * 8 6 5 10 10 N 1.34774 * 119.99885 * 62.09653 * 8 6 5 11 11 C 1.46499 * 120.00108 * 5.55423 * 10 8 6 12 12 C 1.50699 * 109.47350 * 270.00244 * 11 10 8 13 13 H 1.07995 * 119.99929 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00185 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99761 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00198 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46705 * 59.99824 * 16 14 12 18 18 H 1.48497 * 109.47209 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46851 * 300.00188 * 16 14 12 20 20 C 1.40027 * 120.00338 * 185.55671 * 10 8 6 21 21 C 1.38854 * 120.04534 * 55.64208 * 20 10 8 22 22 C 1.38115 * 119.95640 * 180.02562 * 21 20 10 23 23 C 1.38481 * 120.04314 * 359.97438 * 22 21 20 24 24 F 1.35095 * 119.95231 * 180.02562 * 23 22 21 25 25 C 1.38465 * 120.08872 * 0.27771 * 23 22 21 26 26 C 1.38118 * 120.04778 * 359.44963 * 25 23 22 27 27 C 1.54275 * 106.63706 * 359.97438 * 6 5 4 28 28 H 1.08994 * 109.47425 * 181.78235 * 1 2 3 29 29 H 1.09003 * 109.47157 * 301.78661 * 1 2 3 30 30 H 1.09006 * 109.47023 * 61.78180 * 1 2 3 31 31 H 1.09002 * 110.48221 * 85.07089 * 4 2 1 32 32 H 1.09001 * 110.48867 * 322.42386 * 4 2 1 33 33 H 1.09003 * 110.03658 * 264.32830 * 5 4 2 34 34 H 1.09001 * 110.03385 * 142.89503 * 5 4 2 35 35 H 1.09002 * 109.46739 * 29.99923 * 11 10 8 36 36 H 1.09008 * 109.47229 * 149.99741 * 11 10 8 37 37 H 0.97003 * 120.00094 * 180.02562 * 15 14 12 38 38 H 1.07992 * 120.02108 * 0.02562 * 21 20 10 39 39 H 1.07993 * 119.97560 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.97678 * 179.70284 * 25 23 22 41 41 H 1.07995 * 120.02275 * 180.25756 * 26 25 23 42 42 H 1.09000 * 110.48131 * 95.08939 * 27 6 5 43 43 H 1.08997 * 110.48233 * 217.73517 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0789 -0.7939 -1.2114 5 6 3.4931 -1.2255 -0.7714 6 6 3.4931 -1.2282 0.7673 7 1 4.2331 -0.5211 1.1420 8 6 3.7956 -2.6122 1.2812 9 8 2.9745 -3.2038 1.9498 10 7 4.9785 -3.1926 0.9978 11 6 6.0168 -2.4345 0.2954 12 6 5.8555 -2.6204 -1.1914 13 1 5.0595 -3.2415 -1.5747 14 6 6.7242 -1.9976 -2.0623 15 7 7.6939 -1.2417 -1.5954 16 14 6.5248 -2.2286 -3.9052 17 1 5.1862 -1.7403 -4.3232 18 1 7.5772 -1.4601 -4.6172 19 1 6.6528 -3.6696 -4.2401 20 6 5.2151 -4.5203 1.3747 21 6 4.3500 -5.5249 0.9618 22 6 4.5849 -6.8338 1.3351 23 6 5.6825 -7.1445 2.1201 24 9 5.9108 -8.4255 2.4837 25 6 6.5434 -6.1435 2.5372 26 6 6.3153 -4.8341 2.1615 27 6 2.0793 -0.7975 1.2098 28 1 -0.3634 -1.0271 0.0320 29 1 -0.3633 0.5413 0.8735 30 1 -0.3633 0.4859 -0.9056 31 1 2.1321 -0.1556 -2.0934 32 1 1.4574 -1.6674 -1.4084 33 1 4.2326 -0.5165 -1.1435 34 1 3.7120 -2.2253 -1.1465 35 1 5.9235 -1.3767 0.5415 36 1 6.9992 -2.7937 0.6021 37 1 8.3049 -0.8032 -2.2081 38 1 3.4942 -5.2830 0.3493 39 1 3.9120 -7.6153 1.0145 40 1 7.3962 -6.3872 3.1534 41 1 6.9894 -4.0542 2.4835 42 1 1.4577 -1.6716 1.4043 43 1 2.1333 -0.1622 2.0938 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558059799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:29 Heat of formation + Delta-G solvation = -79.511906 kcal Electronic energy + Delta-G solvation = -25704.947512 eV Core-core repulsion = 22049.345733 eV Total energy + Delta-G solvation = -3655.601780 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.86783 -41.77612 -39.77202 -38.19077 -36.79503 -34.54914 -32.53218 -32.18024 -30.52459 -29.79103 -28.79146 -26.34297 -25.12208 -23.99217 -23.70339 -22.00849 -20.83490 -19.96437 -18.79296 -18.57691 -17.98103 -17.80468 -17.32890 -16.74980 -16.54918 -16.23243 -15.76857 -15.37964 -15.20731 -14.60344 -14.51037 -14.42699 -14.27925 -14.13399 -13.88484 -13.76678 -13.45512 -13.19530 -12.95038 -12.88047 -12.63210 -12.43429 -12.20126 -12.08940 -11.97583 -11.81071 -11.66737 -11.46356 -11.32635 -11.20782 -10.68962 -10.51238 -10.30601 -10.10858 -9.06235 -8.17012 -6.25731 0.08288 0.24110 1.42879 1.45077 1.50335 1.64823 2.13074 2.42950 2.60290 3.14244 3.26008 3.59856 3.70673 3.75976 3.85901 3.89637 4.20177 4.23358 4.38563 4.42205 4.48834 4.53188 4.63254 4.76099 4.78454 4.81502 4.88516 4.96417 4.99731 5.08821 5.10998 5.13884 5.17718 5.19544 5.30483 5.36066 5.39923 5.50078 5.56206 5.64659 5.68867 5.76512 6.02432 6.04457 6.44235 6.77889 7.22748 7.40983 8.88667 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010140 B = 0.006095 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.616795 B = 4592.864379 C = 6510.541691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 H 0.084 0.916 4 C -0.120 4.120 5 C -0.102 4.102 6 C -0.101 4.101 7 H 0.094 0.906 8 C 0.522 3.478 9 O -0.575 6.575 10 N -0.559 5.559 11 C 0.253 3.747 12 C -0.524 4.524 13 H 0.057 0.943 14 C 0.030 3.970 15 N -0.918 5.918 16 Si 0.940 3.060 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.279 1.279 20 C 0.138 3.862 21 C -0.100 4.100 22 C -0.135 4.135 23 C 0.072 3.928 24 F -0.142 7.142 25 C -0.130 4.130 26 C -0.112 4.112 27 C -0.100 4.100 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.024 0.976 37 H 0.266 0.734 38 H 0.120 0.880 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.139 0.861 42 H 0.067 0.933 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 -1.355 3.879 8.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.103 0.897 4 C -0.158 4.158 5 C -0.140 4.140 6 C -0.122 4.122 7 H 0.112 0.888 8 C 0.313 3.687 9 O -0.456 6.456 10 N -0.285 5.285 11 C 0.134 3.866 12 C -0.562 4.562 13 H 0.075 0.925 14 C -0.170 4.170 15 N -0.557 5.557 16 Si 0.766 3.234 17 H -0.190 1.190 18 H -0.211 1.211 19 H -0.204 1.204 20 C 0.046 3.954 21 C -0.120 4.120 22 C -0.154 4.154 23 C 0.053 3.947 24 F -0.120 7.120 25 C -0.149 4.149 26 C -0.132 4.132 27 C -0.138 4.138 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.175 0.825 40 H 0.181 0.819 41 H 0.157 0.843 42 H 0.086 0.914 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.610 -1.538 4.166 8.811 hybrid contribution 0.599 -0.271 -1.039 1.230 sum -7.011 -1.809 3.127 7.886 Atomic orbital electron populations 1.21713 0.93664 1.01722 1.02360 1.22109 0.96342 0.98951 0.93483 0.89731 1.22503 0.95331 0.99615 0.98316 1.22246 0.97062 1.03077 0.91587 1.21873 1.00006 0.92044 0.98294 0.88821 1.21182 0.80000 0.89362 0.78134 1.90588 1.47592 1.66882 1.40536 1.45998 1.16502 1.10505 1.55448 1.19289 0.85099 0.91228 0.91020 1.21420 1.13921 1.29643 0.91258 0.92469 1.25406 0.94664 0.94829 1.02119 1.69978 1.17458 1.31889 1.36407 0.85866 0.78297 0.78046 0.81156 1.18953 1.21080 1.20440 1.18077 0.96425 0.84893 0.96054 1.20978 0.99834 0.91760 0.99466 1.21119 0.97874 0.96986 0.99428 1.17674 0.97418 0.78874 1.00738 1.91467 1.94514 1.35742 1.90306 1.21156 1.00704 0.91050 1.02019 1.21114 0.97919 0.97235 0.96927 1.22378 0.93034 0.99990 0.98371 0.93297 0.91754 0.91630 0.90981 0.92278 0.91911 0.91387 0.94472 0.95766 0.92454 0.86189 0.82491 0.81859 0.84320 0.91448 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.27 71.98 0.67 -2.17 16 2 C -0.09 -2.28 3.49 -9.47 -0.03 -2.31 16 3 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.12 -3.49 6.28 31.67 0.20 -3.29 16 5 C -0.10 -3.69 4.39 31.32 0.14 -3.55 16 6 C -0.10 -3.57 2.43 -10.81 -0.03 -3.59 16 7 H 0.09 3.28 7.22 -2.39 -0.02 3.26 16 8 C 0.52 21.20 6.58 87.66 0.58 21.77 16 9 O -0.58 -25.19 14.72 -3.08 -0.05 -25.24 16 10 N -0.56 -23.24 2.54 -635.23 -1.62 -24.86 16 11 C 0.25 11.49 4.67 85.63 0.40 11.89 16 12 C -0.52 -25.37 6.30 25.60 0.16 -25.21 16 13 H 0.06 2.83 6.52 -2.91 -0.02 2.81 16 14 C 0.03 1.51 5.46 84.65 0.46 1.97 16 15 N -0.92 -48.23 13.29 21.45 0.28 -47.94 16 16 Si 0.94 40.19 29.54 68.60 2.03 42.22 16 17 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 18 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 C 0.14 5.39 5.20 38.13 0.20 5.59 16 21 C -0.10 -3.66 8.90 22.39 0.20 -3.46 16 22 C -0.13 -4.14 10.02 22.30 0.22 -3.92 16 23 C 0.07 2.17 7.30 22.38 0.16 2.33 16 24 F -0.14 -4.01 17.26 44.97 0.78 -3.24 16 25 C -0.13 -3.80 10.02 22.30 0.22 -3.57 16 26 C -0.11 -3.83 9.30 22.39 0.21 -3.62 16 27 C -0.10 -2.97 5.60 31.70 0.18 -2.79 16 28 H 0.05 1.07 8.12 -2.39 -0.02 1.05 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.18 8.14 -2.38 -0.02 1.17 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.06 1.71 8.05 -2.39 -0.02 1.70 16 33 H 0.06 2.46 7.86 -2.39 -0.02 2.44 16 34 H 0.07 2.81 4.72 -2.39 -0.01 2.80 16 35 H 0.04 1.74 6.42 -2.39 -0.02 1.72 16 36 H 0.02 1.17 7.27 -2.38 -0.02 1.16 16 37 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 38 H 0.12 4.48 8.01 -2.91 -0.02 4.46 16 39 H 0.16 3.91 8.06 -2.91 -0.02 3.88 16 40 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 41 H 0.14 4.49 7.76 -2.91 -0.02 4.46 16 42 H 0.07 2.23 6.78 -2.39 -0.02 2.21 16 43 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -55.78 347.76 6.37 -49.41 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 1.01 Total: 23.60 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 3.94 Total: -13.94 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.33 Total: -72.80 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.05 Total: -25.24 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.78 Total: -3.24 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -55.78 6.37 -49.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558059799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.106 kcal (2) G-P(sol) polarization free energy of solvation -55.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds