Wall clock time and date at job start Tue Mar 31 2020 08:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46915 * 2 1 4 4 N 1.46493 * 109.47467 * 119.99734 * 2 1 3 5 5 C 1.46494 * 120.00444 * 299.72792 * 4 2 1 6 6 C 1.50694 * 109.47248 * 270.27463 * 5 4 2 7 7 H 1.07999 * 119.99904 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00385 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99650 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00268 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47003 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47185 * 120.00431 * 10 8 6 13 13 H 1.48507 * 109.47178 * 240.00326 * 10 8 6 14 14 C 1.34784 * 119.99864 * 120.00082 * 4 2 1 15 15 O 1.21279 * 119.99925 * 179.72608 * 14 4 2 16 16 C 1.50700 * 119.99961 * 359.72839 * 14 4 2 17 17 C 1.50697 * 109.47266 * 180.02562 * 16 14 4 18 18 C 1.32577 * 120.00264 * 124.99803 * 17 16 14 19 19 C 1.47781 * 120.00204 * 180.02562 * 18 17 16 20 20 C 1.39532 * 120.15231 * 359.72242 * 19 18 17 21 21 C 1.37950 * 119.88292 * 179.74934 * 20 19 18 22 22 C 1.38391 * 120.19348 * 0.55045 * 21 20 19 23 23 C 1.38270 * 120.31009 * 359.70573 * 22 21 20 24 24 C 1.38240 * 120.11963 * 0.02562 * 23 22 21 25 25 F 1.35097 * 120.10526 * 179.97438 * 24 23 22 26 26 H 1.09001 * 109.46975 * 299.99869 * 1 2 3 27 27 H 1.08994 * 109.47439 * 59.99868 * 1 2 3 28 28 H 1.09000 * 109.46462 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46975 * 240.00131 * 2 1 3 30 30 H 1.08998 * 109.47559 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47281 * 300.00476 * 3 2 1 32 32 H 1.09001 * 109.47192 * 60.00264 * 3 2 1 33 33 H 1.09003 * 109.47006 * 30.27410 * 5 4 2 34 34 H 1.09004 * 109.47665 * 150.27102 * 5 4 2 35 35 H 0.96998 * 120.00151 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.46932 * 300.00223 * 16 14 4 37 37 H 1.08997 * 109.47392 * 59.99562 * 16 14 4 38 38 H 1.08000 * 119.99838 * 304.99991 * 17 16 14 39 39 H 1.08000 * 119.99898 * 0.02562 * 18 17 16 40 40 H 1.08006 * 120.06008 * 0.02562 * 20 19 18 41 41 H 1.08001 * 119.90748 * 180.25175 * 21 20 19 42 42 H 1.07999 * 119.84401 * 179.71907 * 22 21 20 43 43 H 1.07999 * 119.94217 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 1.6696 -0.1866 2.5267 6 6 2.7095 0.8071 2.9761 7 1 3.5469 1.0396 2.3349 8 6 2.5921 1.4194 4.2059 9 7 1.5727 1.1358 4.9869 10 14 3.8809 2.6516 4.7627 11 1 4.9181 2.7930 3.7094 12 1 3.2362 3.9675 5.0032 13 1 4.5132 2.1733 6.0184 14 6 2.7934 -1.7863 1.0724 15 8 3.2018 -2.3551 2.0627 16 6 3.1523 -2.3048 -0.2963 17 6 4.0193 -3.5296 -0.1581 18 6 3.6652 -4.6625 -0.7487 19 6 4.5152 -5.8638 -0.6127 20 6 5.6939 -5.8077 0.1317 21 6 6.4805 -6.9338 0.2593 22 6 6.1096 -8.1155 -0.3582 23 6 4.9459 -8.1786 -1.1022 24 6 4.1452 -7.0595 -1.2340 25 9 3.0085 -7.1214 -1.9615 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.6951 0.3003 2.4868 34 1 1.6321 -1.0172 3.2316 35 1 1.4898 1.5668 5.8520 36 1 2.2419 -2.5636 -0.8370 37 1 3.6947 -1.5353 -0.8456 38 1 4.9291 -3.4845 0.4221 39 1 2.7556 -4.7075 -1.3292 40 1 5.9878 -4.8855 0.6110 41 1 7.3909 -6.8919 0.8389 42 1 6.7320 -8.9924 -0.2583 43 1 4.6619 -9.1040 -1.5813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573778821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:11 Heat of formation + Delta-G solvation = -67.168350 kcal Electronic energy + Delta-G solvation = -24243.665993 eV Core-core repulsion = 20588.599471 eV Total energy + Delta-G solvation = -3655.066523 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.90024 -40.88098 -39.92113 -37.62154 -36.01852 -34.91080 -32.41697 -32.31051 -31.48367 -29.74984 -28.07388 -27.72964 -25.03983 -24.17977 -23.16383 -22.57835 -20.55763 -19.53085 -18.67121 -18.59965 -18.11749 -17.38552 -16.99830 -16.85300 -16.61437 -16.23161 -16.00617 -15.16802 -15.00884 -14.84528 -14.72540 -14.47415 -14.25702 -14.01497 -13.83107 -13.51301 -13.35694 -13.22164 -13.12644 -12.85335 -12.77412 -12.73341 -12.51583 -12.21239 -12.13699 -12.05758 -11.92769 -11.61671 -11.48924 -11.29256 -10.61508 -10.55795 -9.83091 -9.40760 -9.08605 -8.18996 -6.30935 -0.19354 0.23447 1.35660 1.37993 1.43273 1.49464 1.85484 2.34141 2.48682 2.77208 3.10780 3.24882 3.55033 3.70977 3.80100 3.98779 4.02373 4.17302 4.24164 4.30843 4.35904 4.43039 4.43745 4.56870 4.62673 4.86089 4.88656 4.94067 5.02019 5.06441 5.08160 5.13290 5.14463 5.24592 5.27305 5.44840 5.46077 5.57096 5.59689 5.65940 5.71299 5.90648 5.94711 6.12114 6.75436 6.85779 7.32377 7.52172 8.88599 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.003121 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.666146 B = 8969.494189 C = 9991.186469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 C -0.152 4.152 4 N -0.598 5.598 5 C 0.264 3.736 6 C -0.523 4.523 7 H 0.055 0.945 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.265 1.265 12 H -0.272 1.272 13 H -0.285 1.285 14 C 0.496 3.504 15 O -0.598 6.598 16 C -0.101 4.101 17 C -0.108 4.108 18 C -0.133 4.133 19 C -0.099 4.099 20 C -0.105 4.105 21 C -0.127 4.127 22 C -0.090 4.090 23 C -0.154 4.154 24 C 0.079 3.921 25 F -0.146 7.146 26 H 0.036 0.964 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.119 0.881 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.024 0.976 34 H -0.011 1.011 35 H 0.264 0.736 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.154 0.846 42 H 0.166 0.834 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.138 -12.844 -17.921 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 C -0.210 4.210 4 N -0.329 5.329 5 C 0.142 3.858 6 C -0.562 4.562 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.189 1.189 12 H -0.197 1.197 13 H -0.211 1.211 14 C 0.285 3.715 15 O -0.479 6.479 16 C -0.140 4.140 17 C -0.127 4.127 18 C -0.151 4.151 19 C -0.100 4.100 20 C -0.123 4.123 21 C -0.145 4.145 22 C -0.108 4.108 23 C -0.173 4.173 24 C 0.060 3.940 25 F -0.125 7.125 26 H 0.055 0.945 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.137 0.863 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.007 0.993 35 H 0.073 0.927 36 H 0.140 0.860 37 H 0.148 0.852 38 H 0.128 0.872 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.171 0.829 42 H 0.184 0.816 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.193 -13.070 -17.285 22.538 hybrid contribution 0.009 0.823 1.024 1.313 sum 6.202 -12.247 -16.262 21.281 Atomic orbital electron populations 1.22130 0.94487 1.02168 1.02754 1.21450 0.95114 0.94099 0.87214 1.22087 1.00733 0.95813 1.02398 1.48400 1.49366 1.26858 1.08315 1.18629 0.95263 0.92510 0.79363 1.21699 1.09027 1.23227 1.02244 0.92627 1.25833 0.97868 0.99215 0.96532 1.70068 1.31556 1.44593 1.11026 0.85438 0.79071 0.78653 0.78090 1.18949 1.19703 1.21072 1.21279 0.78056 0.80100 0.92054 1.90639 1.55196 1.59861 1.42224 1.20829 1.01933 0.97733 0.93523 1.22941 0.99320 0.93590 0.96809 1.21547 0.99694 0.91295 1.02590 1.19229 0.97114 0.93223 1.00448 1.21476 0.93254 1.00277 0.97285 1.21524 1.00742 0.92305 0.99900 1.21476 0.95463 0.99072 0.94795 1.21409 0.95863 0.97819 1.02172 1.18033 0.84721 0.95316 0.95927 1.91446 1.48667 1.96993 1.75345 0.94478 0.88412 0.92551 0.86308 0.93617 0.89161 0.93916 0.95809 0.99289 0.92674 0.85961 0.85238 0.87181 0.85225 0.84971 0.82858 0.81643 0.82561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 9.18 71.98 0.66 -3.64 16 2 C 0.12 3.71 3.17 44.99 0.14 3.85 16 3 C -0.15 -4.68 8.45 71.98 0.61 -4.07 16 4 N -0.60 -25.10 2.39 -802.16 -1.92 -27.01 16 5 C 0.26 14.26 4.59 85.63 0.39 14.65 16 6 C -0.52 -29.87 7.81 25.60 0.20 -29.67 16 7 H 0.06 3.13 7.61 -2.91 -0.02 3.11 16 8 C 0.00 0.21 5.46 84.66 0.46 0.67 16 9 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 10 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 14 C 0.50 20.55 7.67 87.66 0.67 21.22 16 15 O -0.60 -31.35 15.61 -3.03 -0.05 -31.40 16 16 C -0.10 -2.75 4.46 29.10 0.13 -2.62 16 17 C -0.11 -3.06 8.18 24.53 0.20 -2.86 16 18 C -0.13 -3.49 9.31 23.64 0.22 -3.27 16 19 C -0.10 -2.52 5.87 -20.08 -0.12 -2.64 16 20 C -0.11 -2.40 9.40 22.51 0.21 -2.19 16 21 C -0.13 -2.18 10.03 22.24 0.22 -1.96 16 22 C -0.09 -1.31 10.04 22.31 0.22 -1.09 16 23 C -0.15 -2.69 10.01 22.28 0.22 -2.47 16 24 C 0.08 1.85 7.28 22.63 0.16 2.02 16 25 F -0.15 -3.61 16.62 44.97 0.75 -2.87 16 26 H 0.04 1.24 6.67 -2.39 -0.02 1.22 16 27 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.12 2.56 5.77 -2.39 -0.01 2.55 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.04 1.64 6.91 -2.39 -0.02 1.62 16 33 H 0.02 1.32 6.44 -2.39 -0.02 1.31 16 34 H -0.01 -0.70 7.42 -2.38 -0.02 -0.72 16 35 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.12 2.60 7.47 -2.38 -0.02 2.58 16 37 H 0.13 2.79 7.77 -2.39 -0.02 2.78 16 38 H 0.11 3.32 6.04 -2.91 -0.02 3.30 16 39 H 0.13 3.06 7.55 -2.91 -0.02 3.04 16 40 H 0.13 3.06 6.17 -2.91 -0.02 3.04 16 41 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 42 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 43 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -76.95 360.54 6.72 -70.23 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 1.01 Total: 14.57 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 4.62 Total: -14.05 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -1.63 Total: -83.76 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.05 Total: -31.40 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.75 Total: -2.87 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -76.95 6.72 -70.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573778821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.064 kcal (2) G-P(sol) polarization free energy of solvation -76.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds