Wall clock time and date at job start Tue Mar 31 2020 08:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47262 * 2 1 4 4 N 1.46505 * 109.46887 * 120.00208 * 2 1 3 5 5 C 1.46502 * 119.99909 * 299.99656 * 4 2 1 6 6 C 1.50698 * 109.47352 * 270.00493 * 5 4 2 7 7 H 1.08008 * 119.99529 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00027 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99911 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99702 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47279 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47086 * 119.99775 * 10 8 6 13 13 H 1.48502 * 109.46906 * 239.99691 * 10 8 6 14 14 C 1.34778 * 120.00103 * 119.99928 * 4 2 1 15 15 O 1.21287 * 120.00079 * 179.97438 * 14 4 2 16 16 C 1.50698 * 120.00172 * 0.02562 * 14 4 2 17 17 C 1.50700 * 109.47154 * 180.02562 * 16 14 4 18 18 C 1.32582 * 120.00053 * 126.60959 * 17 16 14 19 19 C 1.47781 * 120.00104 * 7.19343 * 18 17 16 20 20 C 1.39533 * 120.15516 * 38.41277 * 19 18 17 21 21 C 1.37949 * 119.88294 * 179.97438 * 20 19 18 22 22 C 1.38386 * 120.19345 * 359.97438 * 21 20 19 23 23 C 1.38268 * 120.31474 * 0.02562 * 22 21 20 24 24 C 1.38241 * 120.11742 * 0.02562 * 23 22 21 25 25 F 1.35093 * 120.10121 * 180.02562 * 24 23 22 26 26 H 1.08996 * 109.47504 * 299.99957 * 1 2 3 27 27 H 1.09002 * 109.47153 * 60.00176 * 1 2 3 28 28 H 1.09004 * 109.47498 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47265 * 239.99802 * 2 1 3 30 30 H 1.09006 * 109.46566 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46952 * 299.99678 * 3 2 1 32 32 H 1.08995 * 109.46753 * 60.00176 * 3 2 1 33 33 H 1.08998 * 109.47025 * 30.00368 * 5 4 2 34 34 H 1.09002 * 109.47259 * 150.00228 * 5 4 2 35 35 H 0.97006 * 119.99774 * 180.02562 * 9 8 6 36 36 H 1.08993 * 109.47405 * 59.99694 * 16 14 4 37 37 H 1.09001 * 109.46839 * 299.99941 * 16 14 4 38 38 H 1.07992 * 119.99897 * 306.60203 * 17 16 14 39 39 H 1.07995 * 119.99890 * 187.19988 * 18 17 16 40 40 H 1.07999 * 120.06141 * 359.97438 * 20 19 18 41 41 H 1.08005 * 119.90379 * 179.97438 * 21 20 19 42 42 H 1.08003 * 119.84282 * 179.72922 * 22 21 20 43 43 H 1.08001 * 119.94072 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.6643 -0.1901 2.5268 6 6 2.7030 0.8018 2.9831 7 1 3.5430 1.0356 2.3457 8 6 2.5815 1.4100 4.2144 9 7 1.5589 1.1248 4.9906 10 14 3.8695 2.6390 4.7802 11 1 4.9108 2.7829 3.7314 12 1 3.2252 3.9549 5.0226 13 1 4.4964 2.1558 6.0367 14 6 2.7930 -1.7865 1.0726 15 8 3.1977 -2.3580 2.0629 16 6 3.1576 -2.3011 -0.2961 17 6 4.0234 -3.5268 -0.1578 18 6 3.6880 -4.6488 -0.7794 19 6 2.5584 -4.6565 -1.7322 20 6 2.3516 -3.5701 -2.5830 21 6 1.2957 -3.5834 -3.4706 22 6 0.4416 -4.6711 -3.5198 23 6 0.6389 -5.7520 -2.6804 24 6 1.6923 -5.7518 -1.7852 25 9 1.8852 -6.8083 -0.9656 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9562 0.8900 33 1 0.6903 0.2973 2.4844 34 1 1.6236 -1.0227 3.2292 35 1 1.4732 1.5530 5.8568 36 1 3.7028 -1.5303 -0.8407 37 1 2.2495 -2.5578 -0.8415 38 1 4.9170 -3.4912 0.4475 39 1 4.2404 -5.5572 -0.5894 40 1 3.0171 -2.7202 -2.5468 41 1 1.1351 -2.7425 -4.1290 42 1 -0.3860 -4.6737 -4.2138 43 1 -0.0316 -6.5975 -2.7236 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573778822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:15 Heat of formation + Delta-G solvation = -41.050928 kcal Electronic energy + Delta-G solvation = -25117.926730 eV Core-core repulsion = 21463.992743 eV Total energy + Delta-G solvation = -3653.933986 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.93307 -39.69468 -38.87737 -36.08515 -35.05246 -32.82184 -30.86313 -30.77251 -30.53006 -28.43731 -26.81903 -26.47682 -23.45608 -22.67722 -22.51715 -21.25046 -19.43314 -18.24638 -17.31622 -16.75958 -16.47022 -16.37917 -15.88255 -15.73142 -15.11380 -14.99663 -14.55321 -14.32533 -13.73739 -13.52448 -13.39307 -13.36893 -13.09827 -12.53525 -12.50962 -12.32905 -12.19231 -11.76739 -11.62161 -11.60685 -11.43072 -11.19459 -10.93489 -10.86478 -10.78844 -10.54187 -10.36549 -10.01988 -9.89520 -9.51205 -9.09222 -8.82121 -8.40868 -8.26207 -7.62453 -6.01817 -4.05034 0.77483 1.01842 2.29379 3.30030 3.37613 3.40043 3.44032 3.50377 3.98913 4.11430 4.46071 4.54983 4.60508 4.76002 4.96441 5.02996 5.09158 5.18411 5.26421 5.32650 5.45528 5.54892 5.59858 5.64954 5.67510 5.79868 5.88638 5.97470 6.00761 6.11348 6.16237 6.19693 6.26182 6.36332 6.55516 6.60547 6.66767 6.77140 6.95914 7.14051 7.50145 7.59835 7.95234 8.27648 8.47235 8.94008 9.13311 9.59127 11.06383 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020556 B = 0.003699 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.823677 B = 7568.534242 C = 8110.080793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 C -0.157 4.157 4 N -0.593 5.593 5 C 0.245 3.755 6 C -0.517 4.517 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.508 3.492 15 O -0.540 6.540 16 C -0.135 4.135 17 C -0.083 4.083 18 C -0.149 4.149 19 C -0.076 4.076 20 C -0.091 4.091 21 C -0.129 4.129 22 C -0.097 4.097 23 C -0.155 4.155 24 C 0.102 3.898 25 F -0.136 7.136 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.040 0.960 35 H 0.262 0.738 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.812 -8.059 -20.106 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.215 4.215 4 N -0.325 5.325 5 C 0.126 3.874 6 C -0.556 4.556 7 H 0.077 0.923 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.294 3.706 15 O -0.418 6.418 16 C -0.174 4.174 17 C -0.102 4.102 18 C -0.167 4.167 19 C -0.077 4.077 20 C -0.109 4.109 21 C -0.148 4.148 22 C -0.115 4.115 23 C -0.173 4.173 24 C 0.083 3.917 25 F -0.114 7.114 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.690 -8.343 -19.348 21.137 hybrid contribution 0.657 0.540 0.619 1.052 sum -1.033 -7.802 -18.729 20.316 Atomic orbital electron populations 1.22159 0.95647 1.01775 1.02444 1.20984 0.94093 0.94090 0.87923 1.22145 1.01339 0.95714 1.02322 1.48322 1.49247 1.26326 1.08615 1.19236 0.95878 0.94957 0.77287 1.21475 1.08847 1.23272 1.02047 0.92332 1.24930 0.95745 0.97162 0.96370 1.69944 1.29532 1.43335 1.10652 0.86499 0.81664 0.80807 0.78780 1.19846 1.21056 1.20979 1.20168 0.79388 0.80892 0.90135 1.90675 1.53382 1.58031 1.39689 1.21354 1.00902 0.97379 0.97808 1.23010 0.98195 0.92954 0.96014 1.21406 0.97446 0.98648 0.99187 1.19167 0.96323 0.93743 0.98454 1.21378 0.98166 0.97142 0.94176 1.21161 0.95466 0.98860 0.99265 1.21030 0.99255 0.92856 0.98348 1.21089 0.98171 1.00817 0.97253 1.17832 0.96790 0.85142 0.91911 1.91493 1.94732 1.54566 1.70639 0.91296 0.92275 0.92972 0.90893 0.92749 0.93275 0.90041 0.94821 0.94151 0.92876 0.88273 0.87924 0.85537 0.85648 0.84456 0.85136 0.85162 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.17 37.15 0.34 -2.01 16 2 C 0.13 2.12 3.17 -67.93 -0.22 1.91 16 3 C -0.16 -2.51 8.47 37.16 0.31 -2.20 16 4 N -0.59 -12.35 2.39 -167.47 -0.40 -12.75 16 5 C 0.25 6.34 4.59 -5.19 -0.02 6.32 16 6 C -0.52 -14.33 7.83 -34.44 -0.27 -14.60 16 7 H 0.06 1.62 7.63 -52.48 -0.40 1.22 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 10 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.51 10.56 7.67 -10.99 -0.08 10.48 16 15 O -0.54 -13.77 15.61 5.55 0.09 -13.69 16 16 C -0.14 -1.98 2.78 -29.04 -0.08 -2.06 16 17 C -0.08 -1.20 8.71 -36.21 -0.32 -1.51 16 18 C -0.15 -1.96 9.45 -37.59 -0.36 -2.31 16 19 C -0.08 -0.94 5.17 -104.95 -0.54 -1.48 16 20 C -0.09 -0.92 7.29 -39.20 -0.29 -1.20 16 21 C -0.13 -1.10 10.03 -39.63 -0.40 -1.49 16 22 C -0.10 -0.81 10.04 -39.52 -0.40 -1.21 16 23 C -0.15 -1.54 10.01 -39.57 -0.40 -1.94 16 24 C 0.10 1.28 7.28 -39.02 -0.28 0.99 16 25 F -0.14 -1.87 16.83 2.25 0.04 -1.83 16 26 H 0.07 1.15 6.66 -51.93 -0.35 0.80 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.93 5.77 -51.93 -0.30 0.63 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.56 6.92 -51.93 -0.36 1.20 16 33 H 0.03 0.88 6.43 -51.93 -0.33 0.55 16 34 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.10 1.22 7.67 -51.93 -0.40 0.82 16 37 H 0.10 1.36 4.36 -51.93 -0.23 1.14 16 38 H 0.13 1.86 8.05 -52.49 -0.42 1.44 16 39 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.14 1.20 6.34 -52.49 -0.33 0.87 16 41 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 42 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -33.29 356.47 -8.30 -41.59 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.02 Total: 1.08 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -3.09 Total: -10.74 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.34 Total: -38.53 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.69 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.29 -8.30 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573778822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.542 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds