Wall clock time and date at job start Tue Mar 31 2020 08:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47262 * 2 1 4 4 N 1.46505 * 109.46887 * 120.00208 * 2 1 3 5 5 C 1.46502 * 119.99909 * 299.99656 * 4 2 1 6 6 C 1.50698 * 109.47352 * 270.00493 * 5 4 2 7 7 H 1.08008 * 119.99529 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00027 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99911 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99702 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47279 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47086 * 119.99775 * 10 8 6 13 13 H 1.48502 * 109.46906 * 239.99691 * 10 8 6 14 14 C 1.34778 * 120.00103 * 119.99928 * 4 2 1 15 15 O 1.21287 * 120.00079 * 179.97438 * 14 4 2 16 16 C 1.50698 * 120.00172 * 0.02562 * 14 4 2 17 17 C 1.50700 * 109.47154 * 180.02562 * 16 14 4 18 18 C 1.32582 * 120.00053 * 126.60959 * 17 16 14 19 19 C 1.47781 * 120.00104 * 7.19343 * 18 17 16 20 20 C 1.39533 * 120.15516 * 38.41277 * 19 18 17 21 21 C 1.37949 * 119.88294 * 179.97438 * 20 19 18 22 22 C 1.38386 * 120.19345 * 359.97438 * 21 20 19 23 23 C 1.38268 * 120.31474 * 0.02562 * 22 21 20 24 24 C 1.38241 * 120.11742 * 0.02562 * 23 22 21 25 25 F 1.35093 * 120.10121 * 180.02562 * 24 23 22 26 26 H 1.08996 * 109.47504 * 299.99957 * 1 2 3 27 27 H 1.09002 * 109.47153 * 60.00176 * 1 2 3 28 28 H 1.09004 * 109.47498 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47265 * 239.99802 * 2 1 3 30 30 H 1.09006 * 109.46566 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46952 * 299.99678 * 3 2 1 32 32 H 1.08995 * 109.46753 * 60.00176 * 3 2 1 33 33 H 1.08998 * 109.47025 * 30.00368 * 5 4 2 34 34 H 1.09002 * 109.47259 * 150.00228 * 5 4 2 35 35 H 0.97006 * 119.99774 * 180.02562 * 9 8 6 36 36 H 1.08993 * 109.47405 * 59.99694 * 16 14 4 37 37 H 1.09001 * 109.46839 * 299.99941 * 16 14 4 38 38 H 1.07992 * 119.99897 * 306.60203 * 17 16 14 39 39 H 1.07995 * 119.99890 * 187.19988 * 18 17 16 40 40 H 1.07999 * 120.06141 * 359.97438 * 20 19 18 41 41 H 1.08005 * 119.90379 * 179.97438 * 21 20 19 42 42 H 1.08003 * 119.84282 * 179.72922 * 22 21 20 43 43 H 1.08001 * 119.94072 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.6643 -0.1901 2.5268 6 6 2.7030 0.8018 2.9831 7 1 3.5430 1.0356 2.3457 8 6 2.5815 1.4100 4.2144 9 7 1.5589 1.1248 4.9906 10 14 3.8695 2.6390 4.7802 11 1 4.9108 2.7829 3.7314 12 1 3.2252 3.9549 5.0226 13 1 4.4964 2.1558 6.0367 14 6 2.7930 -1.7865 1.0726 15 8 3.1977 -2.3580 2.0629 16 6 3.1576 -2.3011 -0.2961 17 6 4.0234 -3.5268 -0.1578 18 6 3.6880 -4.6488 -0.7794 19 6 2.5584 -4.6565 -1.7322 20 6 2.3516 -3.5701 -2.5830 21 6 1.2957 -3.5834 -3.4706 22 6 0.4416 -4.6711 -3.5198 23 6 0.6389 -5.7520 -2.6804 24 6 1.6923 -5.7518 -1.7852 25 9 1.8852 -6.8083 -0.9656 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9562 0.8900 33 1 0.6903 0.2973 2.4844 34 1 1.6236 -1.0227 3.2292 35 1 1.4732 1.5530 5.8568 36 1 3.7028 -1.5303 -0.8407 37 1 2.2495 -2.5578 -0.8415 38 1 4.9170 -3.4912 0.4475 39 1 4.2404 -5.5572 -0.5894 40 1 3.0171 -2.7202 -2.5468 41 1 1.1351 -2.7425 -4.1290 42 1 -0.3860 -4.6737 -4.2138 43 1 -0.0316 -6.5975 -2.7236 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573778822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:14 Heat of formation + Delta-G solvation = -59.846179 kcal Electronic energy + Delta-G solvation = -25118.741753 eV Core-core repulsion = 21463.992743 eV Total energy + Delta-G solvation = -3654.749010 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.88194 -41.02247 -39.93782 -37.61553 -36.15606 -34.90406 -32.39761 -31.70814 -31.44330 -29.88468 -28.25131 -27.86950 -25.02610 -23.83014 -23.44541 -22.63596 -20.50394 -19.59171 -18.59998 -18.38673 -18.01826 -17.44478 -16.96645 -16.74432 -16.57966 -16.32315 -16.02490 -15.38237 -15.10793 -14.83462 -14.73191 -14.36083 -14.24689 -14.06595 -13.84315 -13.38458 -13.34217 -13.24220 -13.02494 -12.82717 -12.74436 -12.72561 -12.51562 -12.31921 -12.19783 -12.06503 -11.75016 -11.59359 -11.48132 -10.90122 -10.61495 -10.54705 -9.73219 -9.39935 -9.20401 -8.18799 -6.30792 -0.05223 0.27735 1.29126 1.35619 1.38390 1.49527 1.85673 2.34438 2.49692 2.73613 3.11107 3.32693 3.63829 3.73010 3.87744 3.91088 4.04772 4.16030 4.29636 4.36428 4.41489 4.43617 4.44501 4.51408 4.76646 4.87019 4.90247 4.98752 5.04608 5.09010 5.13818 5.15092 5.19893 5.24741 5.32489 5.45604 5.48497 5.58627 5.62326 5.66402 5.67006 5.91312 5.99727 6.12295 6.75654 6.86146 7.32683 7.52628 8.88838 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020556 B = 0.003699 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.823677 B = 7568.534242 C = 8110.080793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 C -0.152 4.152 4 N -0.597 5.597 5 C 0.263 3.737 6 C -0.523 4.523 7 H 0.056 0.944 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.265 1.265 12 H -0.271 1.271 13 H -0.286 1.286 14 C 0.494 3.506 15 O -0.602 6.602 16 C -0.113 4.113 17 C -0.110 4.110 18 C -0.133 4.133 19 C -0.103 4.103 20 C -0.096 4.096 21 C -0.120 4.120 22 C -0.089 4.089 23 C -0.160 4.160 24 C 0.070 3.930 25 F -0.154 7.154 26 H 0.035 0.965 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.119 0.881 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.040 0.960 33 H 0.025 0.975 34 H -0.014 1.014 35 H 0.264 0.736 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.164 0.836 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 -6.713 -24.138 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 C -0.210 4.210 4 N -0.328 5.328 5 C 0.142 3.858 6 C -0.562 4.562 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.189 1.189 12 H -0.196 1.196 13 H -0.212 1.212 14 C 0.283 3.717 15 O -0.483 6.483 16 C -0.152 4.152 17 C -0.129 4.129 18 C -0.151 4.151 19 C -0.104 4.104 20 C -0.113 4.113 21 C -0.138 4.138 22 C -0.107 4.107 23 C -0.178 4.178 24 C 0.051 3.949 25 F -0.133 7.133 26 H 0.054 0.946 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.137 0.863 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.004 0.996 35 H 0.073 0.927 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.131 0.869 39 H 0.143 0.857 40 H 0.172 0.828 41 H 0.184 0.816 42 H 0.182 0.818 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.121 -6.980 -23.437 24.546 hybrid contribution 0.695 0.041 1.765 1.897 sum -1.426 -6.940 -21.672 22.801 Atomic orbital electron populations 1.22130 0.94488 1.01992 1.02891 1.21457 0.95107 0.94112 0.87112 1.22090 1.00751 0.95684 1.02500 1.48383 1.49259 1.26803 1.08350 1.18634 0.95315 0.92473 0.79401 1.21697 1.08903 1.23312 1.02255 0.92557 1.25827 0.97835 0.99190 0.96542 1.70071 1.31421 1.44660 1.11110 0.85438 0.79079 0.78677 0.78052 1.18906 1.19587 1.21229 1.21349 0.78137 0.80071 0.92103 1.90638 1.55553 1.59771 1.42381 1.21304 1.02172 0.98007 0.93671 1.22874 0.98692 0.93724 0.97560 1.21533 0.97256 0.97972 0.98359 1.19286 0.96505 0.95071 0.99573 1.21649 0.99025 0.96689 0.93955 1.21614 0.94025 0.99705 0.98474 1.21500 0.99726 0.91817 0.97642 1.21389 0.97505 1.02125 0.96818 1.18249 0.98442 0.85137 0.93078 1.91440 1.95009 1.55444 1.71427 0.94579 0.88015 0.92885 0.86323 0.93597 0.88846 0.94033 0.95703 0.99558 0.92693 0.84959 0.85768 0.86942 0.85709 0.82793 0.81553 0.81831 0.83485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 9.17 71.98 0.66 -3.52 16 2 C 0.12 3.64 3.17 44.99 0.14 3.78 16 3 C -0.15 -4.51 8.47 71.98 0.61 -3.90 16 4 N -0.60 -25.13 2.39 -802.13 -1.91 -27.04 16 5 C 0.26 14.32 4.59 85.63 0.39 14.71 16 6 C -0.52 -29.94 7.83 25.60 0.20 -29.74 16 7 H 0.06 3.17 7.63 -2.91 -0.02 3.15 16 8 C 0.00 0.24 5.46 84.66 0.46 0.70 16 9 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 10 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 11 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 14 C 0.49 20.88 7.67 87.66 0.67 21.55 16 15 O -0.60 -32.43 15.61 -3.05 -0.05 -32.48 16 16 C -0.11 -3.12 2.78 29.10 0.08 -3.04 16 17 C -0.11 -3.17 8.71 24.53 0.21 -2.95 16 18 C -0.13 -3.50 9.45 23.64 0.22 -3.28 16 19 C -0.10 -2.40 5.17 -20.08 -0.10 -2.51 16 20 C -0.10 -1.57 7.29 22.51 0.16 -1.41 16 21 C -0.12 -1.41 10.03 22.24 0.22 -1.18 16 22 C -0.09 -1.09 10.04 22.31 0.22 -0.86 16 23 C -0.16 -2.81 10.01 22.28 0.22 -2.59 16 24 C 0.07 1.69 7.28 22.63 0.16 1.85 16 25 F -0.15 -4.37 16.83 44.97 0.76 -3.61 16 26 H 0.04 1.19 6.66 -2.39 -0.02 1.17 16 27 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.12 2.42 5.77 -2.38 -0.01 2.41 16 30 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 1.56 6.92 -2.39 -0.02 1.54 16 33 H 0.03 1.38 6.43 -2.39 -0.02 1.37 16 34 H -0.01 -0.88 7.42 -2.39 -0.02 -0.90 16 35 H 0.26 15.25 8.31 -92.70 -0.77 14.47 16 36 H 0.13 2.74 7.67 -2.39 -0.02 2.73 16 37 H 0.12 2.91 4.36 -2.39 -0.01 2.90 16 38 H 0.11 3.48 8.05 -2.91 -0.02 3.46 16 39 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 40 H 0.15 1.95 6.34 -2.91 -0.02 1.93 16 41 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 42 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 43 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -79.65 356.47 6.67 -72.98 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 1.01 Total: 12.08 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 4.55 Total: -12.37 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -1.63 Total: -84.00 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.05 Total: -32.48 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.76 Total: -3.61 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -79.65 6.67 -72.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573778822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.136 kcal (2) G-P(sol) polarization free energy of solvation -79.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds