Wall clock time and date at job start Tue Mar 31 2020 08:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 120.00056 * 2 1 4 4 N 1.46503 * 109.47113 * 123.88592 * 3 2 1 5 5 C 1.46497 * 120.00206 * 86.26133 * 4 3 2 6 6 C 1.50696 * 109.46868 * 91.09458 * 5 4 3 7 7 H 1.07990 * 120.00390 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99606 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99795 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99998 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.46891 * 180.02562 * 10 8 6 12 12 H 1.48501 * 109.47336 * 300.00605 * 10 8 6 13 13 H 1.48499 * 109.46614 * 60.00664 * 10 8 6 14 14 C 1.34777 * 119.99569 * 266.25815 * 4 3 2 15 15 O 1.21285 * 119.99894 * 4.96291 * 14 4 3 16 16 C 1.50696 * 120.00344 * 184.96465 * 14 4 3 17 17 H 1.09007 * 107.90779 * 329.62593 * 16 14 4 18 18 C 1.51013 * 108.05612 * 213.01511 * 16 14 4 19 19 C 1.53679 * 110.86833 * 166.12469 * 18 16 14 20 20 C 1.51803 * 106.94848 * 79.02139 * 19 18 16 21 21 N 1.30307 * 127.92231 * 114.42596 * 20 19 18 22 22 N 1.29262 * 107.46781 * 179.97438 * 21 20 19 23 23 N 1.29146 * 109.43319 * 0.02562 * 22 21 20 24 24 N 1.28402 * 108.35678 * 0.02562 * 23 22 21 25 25 C 1.47649 * 127.74613 * 180.02562 * 24 23 22 26 26 C 1.50878 * 108.05482 * 86.23088 * 16 14 4 27 27 H 1.07998 * 119.99623 * 5.76476 * 1 2 3 28 28 H 1.07997 * 119.99851 * 185.76203 * 1 2 3 29 29 H 1.08001 * 120.00145 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.46976 * 3.87902 * 3 2 1 31 31 H 1.09001 * 109.46853 * 243.88154 * 3 2 1 32 32 H 1.08997 * 109.46873 * 331.09056 * 5 4 3 33 33 H 1.09002 * 109.46490 * 211.09155 * 5 4 3 34 34 H 0.97006 * 119.99840 * 179.97438 * 9 8 6 35 35 H 1.08991 * 109.19584 * 286.48040 * 18 16 14 36 36 H 1.09008 * 109.19527 * 45.81474 * 18 16 14 37 37 H 1.09004 * 109.95655 * 198.37922 * 19 18 16 38 38 H 1.09003 * 109.96066 * 319.65735 * 19 18 16 39 39 H 1.08992 * 109.92064 * 5.15577 * 25 24 23 40 40 H 1.09000 * 109.91801 * 126.32977 * 25 24 23 41 41 H 1.09010 * 109.12766 * 314.72840 * 26 16 14 42 42 H 1.08994 * 109.12952 * 73.83445 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9746 1.3430 1.1466 5 6 4.3147 0.7612 1.0370 6 6 5.2859 1.8194 0.5813 7 1 4.9397 2.8246 0.3918 8 6 6.6168 1.5042 0.4062 9 7 7.0383 0.2799 0.6365 10 14 7.8207 2.8157 -0.1595 11 1 9.1790 2.2259 -0.2704 12 1 7.3982 3.3373 -1.4841 13 1 7.8418 3.9263 0.8261 14 6 2.5799 1.9131 2.3023 15 8 1.4416 2.3140 2.4230 16 6 3.5529 2.0527 3.4446 17 1 4.2595 1.2246 3.3861 18 6 2.7812 1.9191 4.7358 19 6 3.7333 1.7064 5.9231 20 6 4.3004 3.0673 6.2850 21 7 4.1165 3.7454 7.3824 22 7 4.7816 4.8484 7.2729 23 7 5.3796 4.8778 6.1286 24 7 5.1006 3.7943 5.4986 25 6 5.5584 3.3863 4.1555 26 6 4.3207 3.3369 3.2507 27 1 -0.5399 0.9306 -0.0939 28 1 -0.5400 -0.9306 0.0939 29 1 1.8500 -0.9353 0.0004 30 1 1.3573 2.1324 0.0695 31 1 2.6370 1.3935 -0.9227 32 1 4.2989 -0.0536 0.3132 33 1 4.6248 0.3778 2.0091 34 1 7.9745 0.0581 0.5130 35 1 2.1993 2.8258 4.9009 36 1 2.1047 1.0674 4.6625 37 1 3.1851 1.2945 6.7705 38 1 4.5399 1.0313 5.6370 39 1 6.2726 4.1136 3.7697 40 1 6.0208 2.4004 4.2044 41 1 4.6362 3.4108 2.2098 42 1 3.6717 4.1802 3.4869 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575808834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:30 Heat of formation + Delta-G solvation = 97.708121 kcal Electronic energy + Delta-G solvation = -26143.091013 eV Core-core repulsion = 22547.386783 eV Total energy + Delta-G solvation = -3595.704230 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.14128 -39.92354 -37.12115 -35.64988 -34.70374 -33.74915 -32.52285 -32.07472 -31.16318 -27.79016 -27.44907 -25.47845 -24.88519 -23.40949 -23.19461 -21.39734 -20.93247 -19.60079 -18.47746 -17.63763 -16.98361 -16.71876 -16.31811 -15.89853 -15.32255 -14.87732 -14.64198 -14.30373 -14.04430 -13.86287 -13.44509 -13.14746 -13.05077 -12.67280 -12.48672 -12.34036 -12.02262 -11.82706 -11.70390 -11.61976 -11.49817 -11.22001 -11.09396 -11.04427 -10.93972 -10.78726 -10.67420 -10.43577 -10.27691 -9.93586 -9.82953 -9.36259 -8.98365 -8.74587 -7.95237 -6.41641 -4.50514 1.48546 2.19297 2.39446 2.44750 3.04998 3.12256 3.14703 3.19232 3.77005 3.98902 4.10827 4.41137 4.58861 4.70575 4.90009 4.93899 5.06989 5.20136 5.23396 5.26455 5.30568 5.42963 5.53483 5.60067 5.63662 5.75384 5.87529 5.90668 5.98622 6.02107 6.06520 6.20920 6.24393 6.30323 6.46962 6.52865 6.83056 6.95784 7.01454 7.30497 7.52167 7.80440 8.11927 8.53981 8.78744 8.79147 9.17934 10.64200 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.006442 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.675116 B = 4345.460345 C = 6401.704156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C 0.143 3.857 4 N -0.590 5.590 5 C 0.235 3.765 6 C -0.543 4.543 7 H 0.063 0.937 8 C 0.071 3.929 9 N -0.885 5.885 10 Si 0.888 3.112 11 H -0.285 1.285 12 H -0.275 1.275 13 H -0.273 1.273 14 C 0.519 3.481 15 O -0.568 6.568 16 C -0.109 4.109 17 H 0.107 0.893 18 C -0.102 4.102 19 C -0.037 4.037 20 C 0.185 3.815 21 N -0.309 5.309 22 N -0.094 5.094 23 N -0.098 5.098 24 N -0.297 5.297 25 C 0.120 3.880 26 C -0.126 4.126 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.268 0.732 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.130 0.870 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 -1.501 2.475 5.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.179 4.179 3 C 0.020 3.980 4 N -0.320 5.320 5 C 0.115 3.885 6 C -0.582 4.582 7 H 0.081 0.919 8 C -0.134 4.134 9 N -0.522 5.522 10 Si 0.715 3.285 11 H -0.210 1.210 12 H -0.200 1.200 13 H -0.198 1.198 14 C 0.307 3.693 15 O -0.448 6.448 16 C -0.130 4.130 17 H 0.125 0.875 18 C -0.141 4.141 19 C -0.077 4.077 20 C -0.094 4.094 21 N -0.158 5.158 22 N -0.088 5.088 23 N -0.083 5.083 24 N -0.100 5.100 25 C 0.000 4.000 26 C -0.165 4.165 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.118 0.882 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.148 0.852 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.359 -0.282 3.347 5.503 hybrid contribution 0.944 -0.142 -1.228 1.556 sum -3.415 -0.424 2.119 4.042 Atomic orbital electron populations 1.23742 0.95894 1.01446 1.01386 1.23374 0.96104 0.99354 0.99098 1.20378 0.92739 0.94922 0.89939 1.48225 1.16566 1.56447 1.10730 1.19504 0.76326 0.94277 0.98369 1.21403 0.92678 0.96671 1.47425 0.91850 1.24907 0.98188 0.95444 0.94843 1.69893 1.16677 1.18177 1.47488 0.86704 0.80254 0.81656 0.79864 1.21021 1.19993 1.19835 1.20385 0.87779 0.77317 0.83845 1.90620 1.20494 1.51199 1.82477 1.20659 0.97978 1.00803 0.93559 0.87543 1.21224 0.97220 1.04365 0.91306 1.20761 0.99703 0.87012 1.00248 1.25992 0.95589 0.99518 0.88252 1.74890 1.19831 1.01511 1.19585 1.78786 1.07215 1.13389 1.09372 1.78806 1.20309 1.06317 1.02916 1.48822 1.31854 1.12213 1.17108 1.22885 0.98864 1.03870 0.74351 1.21675 0.94608 0.96874 1.03324 0.88737 0.88943 0.87477 0.90490 0.89751 0.94387 0.94267 0.92202 0.90722 0.89478 0.87204 0.88191 0.86321 0.86304 0.85218 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.50 14.31 29.01 0.42 -2.08 16 2 C -0.16 -2.38 9.85 -36.02 -0.35 -2.73 16 3 C 0.14 2.36 5.85 -5.19 -0.03 2.33 16 4 N -0.59 -10.51 2.44 -176.44 -0.43 -10.94 16 5 C 0.23 4.60 4.92 -5.20 -0.03 4.57 16 6 C -0.54 -11.51 7.63 -34.44 -0.26 -11.77 16 7 H 0.06 1.36 6.85 -52.49 -0.36 1.00 16 8 C 0.07 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.89 -21.06 13.29 55.43 0.74 -20.33 16 10 Si 0.89 17.80 29.54 -169.99 -5.02 12.78 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 13 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 14 C 0.52 9.14 6.34 -10.99 -0.07 9.07 16 15 O -0.57 -11.37 15.90 5.55 0.09 -11.28 16 16 C -0.11 -1.59 1.46 -93.84 -0.14 -1.73 16 17 H 0.11 1.53 5.26 -51.92 -0.27 1.26 16 18 C -0.10 -1.32 4.35 -27.38 -0.12 -1.44 16 19 C -0.04 -0.41 6.00 -26.99 -0.16 -0.57 16 20 C 0.19 2.70 7.11 -156.73 -1.11 1.58 16 21 N -0.31 -5.24 12.37 32.63 0.40 -4.84 16 22 N -0.09 -1.71 13.45 60.32 0.81 -0.90 16 23 N -0.10 -1.66 13.36 60.35 0.81 -0.86 16 24 N -0.30 -4.42 3.36 -57.37 -0.19 -4.61 16 25 C 0.12 1.56 6.72 -3.21 -0.02 1.54 16 26 C -0.13 -1.83 4.83 -27.59 -0.13 -1.96 16 27 H 0.09 1.25 7.86 -52.49 -0.41 0.84 16 28 H 0.09 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.08 1.29 7.04 -51.93 -0.37 0.93 16 31 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 32 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 33 H 0.04 0.77 5.91 -51.93 -0.31 0.47 16 34 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 35 H 0.07 1.10 7.91 -51.93 -0.41 0.69 16 36 H 0.09 1.09 7.99 -51.92 -0.41 0.67 16 37 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.10 0.94 7.89 -51.93 -0.41 0.53 16 39 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.12 1.40 7.87 -51.93 -0.41 0.99 16 41 H 0.13 2.09 5.08 -51.92 -0.26 1.83 16 42 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -27.17 344.45 -5.43 -32.60 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.71 Total: 4.90 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.11 Total: -1.71 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 2.13 Total: -42.48 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.02 Total: 12.78 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.17 -5.43 -32.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575808834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.309 kcal (2) G-P(sol) polarization free energy of solvation -27.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds