Wall clock time and date at job start Tue Mar 31 2020 08:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 120.00056 * 2 1 4 4 N 1.46503 * 109.47113 * 123.88592 * 3 2 1 5 5 C 1.46497 * 120.00206 * 86.26133 * 4 3 2 6 6 C 1.50696 * 109.46868 * 91.09458 * 5 4 3 7 7 H 1.07990 * 120.00390 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99606 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99795 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99998 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.46891 * 180.02562 * 10 8 6 12 12 H 1.48501 * 109.47336 * 300.00605 * 10 8 6 13 13 H 1.48499 * 109.46614 * 60.00664 * 10 8 6 14 14 C 1.34777 * 119.99569 * 266.25815 * 4 3 2 15 15 O 1.21285 * 119.99894 * 4.96291 * 14 4 3 16 16 C 1.50696 * 120.00344 * 184.96465 * 14 4 3 17 17 H 1.09007 * 107.90779 * 329.62593 * 16 14 4 18 18 C 1.51013 * 108.05612 * 213.01511 * 16 14 4 19 19 C 1.53679 * 110.86833 * 166.12469 * 18 16 14 20 20 C 1.51803 * 106.94848 * 79.02139 * 19 18 16 21 21 N 1.30307 * 127.92231 * 114.42596 * 20 19 18 22 22 N 1.29262 * 107.46781 * 179.97438 * 21 20 19 23 23 N 1.29146 * 109.43319 * 0.02562 * 22 21 20 24 24 N 1.28402 * 108.35678 * 0.02562 * 23 22 21 25 25 C 1.47649 * 127.74613 * 180.02562 * 24 23 22 26 26 C 1.50878 * 108.05482 * 86.23088 * 16 14 4 27 27 H 1.07998 * 119.99623 * 5.76476 * 1 2 3 28 28 H 1.07997 * 119.99851 * 185.76203 * 1 2 3 29 29 H 1.08001 * 120.00145 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.46976 * 3.87902 * 3 2 1 31 31 H 1.09001 * 109.46853 * 243.88154 * 3 2 1 32 32 H 1.08997 * 109.46873 * 331.09056 * 5 4 3 33 33 H 1.09002 * 109.46490 * 211.09155 * 5 4 3 34 34 H 0.97006 * 119.99840 * 179.97438 * 9 8 6 35 35 H 1.08991 * 109.19584 * 286.48040 * 18 16 14 36 36 H 1.09008 * 109.19527 * 45.81474 * 18 16 14 37 37 H 1.09004 * 109.95655 * 198.37922 * 19 18 16 38 38 H 1.09003 * 109.96066 * 319.65735 * 19 18 16 39 39 H 1.08992 * 109.92064 * 5.15577 * 25 24 23 40 40 H 1.09000 * 109.91801 * 126.32977 * 25 24 23 41 41 H 1.09010 * 109.12766 * 314.72840 * 26 16 14 42 42 H 1.08994 * 109.12952 * 73.83445 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9746 1.3430 1.1466 5 6 4.3147 0.7612 1.0370 6 6 5.2859 1.8194 0.5813 7 1 4.9397 2.8246 0.3918 8 6 6.6168 1.5042 0.4062 9 7 7.0383 0.2799 0.6365 10 14 7.8207 2.8157 -0.1595 11 1 9.1790 2.2259 -0.2704 12 1 7.3982 3.3373 -1.4841 13 1 7.8418 3.9263 0.8261 14 6 2.5799 1.9131 2.3023 15 8 1.4416 2.3140 2.4230 16 6 3.5529 2.0527 3.4446 17 1 4.2595 1.2246 3.3861 18 6 2.7812 1.9191 4.7358 19 6 3.7333 1.7064 5.9231 20 6 4.3004 3.0673 6.2850 21 7 4.1165 3.7454 7.3824 22 7 4.7816 4.8484 7.2729 23 7 5.3796 4.8778 6.1286 24 7 5.1006 3.7943 5.4986 25 6 5.5584 3.3863 4.1555 26 6 4.3207 3.3369 3.2507 27 1 -0.5399 0.9306 -0.0939 28 1 -0.5400 -0.9306 0.0939 29 1 1.8500 -0.9353 0.0004 30 1 1.3573 2.1324 0.0695 31 1 2.6370 1.3935 -0.9227 32 1 4.2989 -0.0536 0.3132 33 1 4.6248 0.3778 2.0091 34 1 7.9745 0.0581 0.5130 35 1 2.1993 2.8258 4.9009 36 1 2.1047 1.0674 4.6625 37 1 3.1851 1.2945 6.7705 38 1 4.5399 1.0313 5.6370 39 1 6.2726 4.1136 3.7697 40 1 6.0208 2.4004 4.2044 41 1 4.6362 3.4108 2.2098 42 1 3.6717 4.1802 3.4869 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575808834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:29 Heat of formation + Delta-G solvation = 82.949334 kcal Electronic energy + Delta-G solvation = -26143.731002 eV Core-core repulsion = 22547.386783 eV Total energy + Delta-G solvation = -3596.344219 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.36493 -41.28833 -38.33671 -37.07844 -35.90138 -35.14631 -34.00480 -33.33066 -32.31712 -29.28168 -28.74565 -26.75126 -26.05449 -24.83646 -24.61737 -22.59763 -22.05003 -20.76941 -19.85450 -18.84917 -18.43531 -18.17913 -17.62136 -17.29403 -16.45804 -16.32864 -16.06094 -15.48308 -15.21175 -15.09902 -14.69911 -14.39481 -14.24028 -14.16371 -13.84647 -13.54061 -13.43251 -13.07904 -13.00916 -12.87143 -12.77260 -12.70021 -12.51959 -12.33445 -12.18456 -11.99116 -11.98570 -11.80993 -11.64810 -11.49207 -11.06859 -10.69206 -10.48794 -10.17418 -9.44494 -8.13535 -6.25371 0.28159 1.06401 1.14741 1.29799 1.46128 1.53549 1.55449 1.76318 2.39490 2.50818 2.93614 3.18179 3.30246 3.44000 3.52820 3.83890 3.92036 4.05829 4.10679 4.17779 4.22289 4.25358 4.39307 4.46058 4.47618 4.61046 4.77972 4.81205 4.83242 4.85926 4.92492 4.96979 5.05345 5.10093 5.18129 5.32302 5.38185 5.70025 5.72497 5.82549 5.91409 6.12839 6.62950 6.88209 7.33890 7.47861 7.53595 8.91184 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.006442 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.675116 B = 4345.460345 C = 6401.704156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.179 4.179 3 C 0.141 3.859 4 N -0.592 5.592 5 C 0.248 3.752 6 C -0.535 4.535 7 H 0.060 0.940 8 C 0.039 3.961 9 N -0.912 5.912 10 Si 0.931 3.069 11 H -0.292 1.292 12 H -0.283 1.283 13 H -0.259 1.259 14 C 0.515 3.485 15 O -0.593 6.593 16 C -0.102 4.102 17 H 0.114 0.886 18 C -0.094 4.094 19 C -0.029 4.029 20 C 0.191 3.809 21 N -0.328 5.328 22 N -0.118 5.118 23 N -0.110 5.110 24 N -0.295 5.295 25 C 0.122 3.878 26 C -0.118 4.118 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.019 0.981 33 H 0.044 0.956 34 H 0.266 0.734 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.139 0.861 41 H 0.115 0.885 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 -2.257 2.808 5.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.198 4.198 3 C 0.018 3.982 4 N -0.321 5.321 5 C 0.128 3.872 6 C -0.574 4.574 7 H 0.078 0.922 8 C -0.162 4.162 9 N -0.551 5.551 10 Si 0.758 3.242 11 H -0.218 1.218 12 H -0.209 1.209 13 H -0.183 1.183 14 C 0.304 3.696 15 O -0.476 6.476 16 C -0.123 4.123 17 H 0.132 0.868 18 C -0.133 4.133 19 C -0.069 4.069 20 C -0.088 4.088 21 N -0.178 5.178 22 N -0.111 5.111 23 N -0.097 5.097 24 N -0.098 5.098 25 C 0.003 3.997 26 C -0.157 4.157 27 H 0.113 0.887 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.038 0.962 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.157 0.843 41 H 0.133 0.867 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.417 -1.027 3.675 5.837 hybrid contribution 0.855 0.086 -1.422 1.662 sum -3.562 -0.940 2.253 4.318 Atomic orbital electron populations 1.23948 0.95391 1.02557 0.98812 1.23255 0.96619 0.98444 1.01476 1.20420 0.92548 0.95819 0.89402 1.48246 1.16161 1.56314 1.11336 1.19239 0.76828 0.93291 0.97887 1.21537 0.92808 0.96740 1.46277 0.92218 1.25347 0.99344 0.96419 0.95124 1.69967 1.16743 1.19396 1.48999 0.86019 0.78424 0.80451 0.79318 1.21773 1.20937 1.18315 1.20891 0.87908 0.76501 0.84267 1.90605 1.21771 1.52228 1.82948 1.20694 0.97453 1.00955 0.93180 0.86785 1.21134 0.97303 1.03775 0.91062 1.20974 1.00191 0.85540 1.00169 1.26577 0.94589 1.00176 0.87408 1.74836 1.20371 1.01649 1.20950 1.78761 1.08074 1.14249 1.10043 1.78751 1.20683 1.07258 1.02959 1.48934 1.31700 1.11748 1.17394 1.23021 0.98170 1.05251 0.73275 1.21521 0.95017 0.96389 1.02735 0.88674 0.86664 0.87313 0.91159 0.90145 0.96250 0.93807 0.92451 0.92729 0.88590 0.84849 0.85542 0.85366 0.84318 0.86685 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 14.31 67.78 0.97 -3.25 16 2 C -0.18 -5.13 9.85 25.65 0.25 -4.88 16 3 C 0.14 4.59 5.85 85.63 0.50 5.10 16 4 N -0.59 -20.69 2.44 -830.51 -2.03 -22.72 16 5 C 0.25 9.50 4.92 85.63 0.42 9.92 16 6 C -0.54 -22.14 7.63 25.60 0.20 -21.95 16 7 H 0.06 2.50 6.85 -2.92 -0.02 2.48 16 8 C 0.04 1.71 5.46 84.66 0.46 2.17 16 9 N -0.91 -42.61 13.29 21.45 0.28 -42.32 16 10 Si 0.93 35.54 29.54 68.60 2.03 37.57 16 11 H -0.29 -11.45 7.11 99.48 0.71 -10.74 16 12 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 13 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 14 C 0.52 17.68 6.34 87.66 0.56 18.24 16 15 O -0.59 -23.42 15.90 -3.05 -0.05 -23.47 16 16 C -0.10 -2.80 1.46 -12.88 -0.02 -2.82 16 17 H 0.11 2.99 5.26 -2.38 -0.01 2.98 16 18 C -0.09 -2.23 4.35 30.18 0.13 -2.10 16 19 C -0.03 -0.55 6.00 30.43 0.18 -0.37 16 20 C 0.19 5.19 7.11 139.13 0.99 6.18 16 21 N -0.33 -10.77 12.37 -50.67 -0.63 -11.40 16 22 N -0.12 -4.20 13.45 36.91 0.50 -3.71 16 23 N -0.11 -3.66 13.36 37.02 0.49 -3.16 16 24 N -0.29 -8.29 3.36 -335.42 -1.13 -9.41 16 25 C 0.12 2.92 6.72 86.29 0.58 3.50 16 26 C -0.12 -3.26 4.83 30.04 0.14 -3.12 16 27 H 0.09 2.36 7.86 -2.91 -0.02 2.34 16 28 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 29 H 0.11 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.07 2.36 7.04 -2.39 -0.02 2.35 16 31 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 32 H 0.02 0.82 8.06 -2.39 -0.02 0.80 16 33 H 0.04 1.66 5.91 -2.39 -0.01 1.64 16 34 H 0.27 12.14 8.31 -92.70 -0.77 11.37 16 35 H 0.05 1.54 7.91 -2.39 -0.02 1.52 16 36 H 0.10 2.16 7.99 -2.38 -0.02 2.14 16 37 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.13 1.83 7.89 -2.39 -0.02 1.82 16 39 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.14 2.83 7.87 -2.39 -0.02 2.81 16 41 H 0.12 3.59 5.08 -2.38 -0.01 3.58 16 42 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 Total: -1.00 -57.25 344.45 5.87 -51.38 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 1.03 Total: 20.63 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.37 Total: 6.61 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -2.51 Total: -92.72 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.05 Total: -23.47 kcal Atomic # 14 Polarization: 35.54 SS G_CDS: 2.03 Total: 37.57 kcal Total: -57.25 5.87 -51.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575808834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.331 kcal (2) G-P(sol) polarization free energy of solvation -57.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds